; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10003374 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003374
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase
Genome locationChr08:245312..245716
RNA-Seq ExpressionHG10003374
SyntenyHG10003374
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026280.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.7e-3256.72Show/hide
Query:  MPQTRRRGRQASIGVPEATGSRDGVPILEGESSNPHVQTEPNIQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLNLIE
        MPQ R R    +     A  +  G    + ESS PHV  E N++EQ+ +R+AQRL+  +    +DSE+K+GIERLKALGAT+F GTTNP DAE WL LIE
Subjt:  MPQTRRRGRQASIGVPEATGSRDGVPILEGESSNPHVQTEPNIQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLNLIE

Query:  KCFRVMRCPEDQKVELAAFLLQKGAEDWWRLFEA
        KCF+V RC ED+KVELAAFLLQ GAEDWW + E+
Subjt:  KCFRVMRCPEDQKVELAAFLLQKGAEDWWRLFEA

KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.3e-3256.62Show/hide
Query:  QTRRRGRQASIGVPEATGSRDGVPILEGESSNPHVQTEPNIQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLNLIEKC
        +T    R+A++G  E+          + ESS PHV  E N++EQ+ +R+AQRL+  + S  +D E+K+GIERLKALGAT+F GTTNPADAEAWL LIEKC
Subjt:  QTRRRGRQASIGVPEATGSRDGVPILEGESSNPHVQTEPNIQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLNLIEKC

Query:  FRVMRCPEDQKVELAAFLLQKG----AEDWWRLFEA
        FRV RCPED+KVELA+FLLQ G     EDWWR+ E+
Subjt:  FRVMRCPEDQKVELAAFLLQKG----AEDWWRLFEA

KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.8e-3064.15Show/hide
Query:  EGESSNPHVQTEPNIQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLNLIEKCFRVMRCPEDQKVELAAFLLQKGAEDW
        + ESS P V  E N++EQ+ +R+AQRLV  + S  +D E+K+G ERLKALGAT+F GTTNP D EAWL LIEKCFRV R  ED+KVELAAFLLQ  AEDW
Subjt:  EGESSNPHVQTEPNIQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLNLIEKCFRVMRCPEDQKVELAAFLLQKGAEDW

Query:  WRLFEA
        WR+ E+
Subjt:  WRLFEA

KAA0056913.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.5e-3058.33Show/hide
Query:  MPQTRRRGR---QASIGVPEATGSRDGVPILEGESSNPHVQTEPNIQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLN
        MP+ R R R   +AS    EA    +     + ESS PHV  E N++EQ+ +R+AQR V  + S  +D E+KF IERLKALG+T+F  TTNPA+AEAWL 
Subjt:  MPQTRRRGR---QASIGVPEATGSRDGVPILEGESSNPHVQTEPNIQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLN

Query:  LIEKCFRVMRCPEDQKVELAAFLLQKGAEDWW
        LIEKCFRVMRC ED+KVEL+AFLLQ GAEDWW
Subjt:  LIEKCFRVMRCPEDQKVELAAFLLQKGAEDWW

XP_038896416.1 uncharacterized protein LOC120084680 [Benincasa hispida]2.0e-3070.33Show/hide
Query:  IQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLNLIEKCFRVMRCPEDQKVELAAFLLQKGAEDWWRLFE
        +++++F+RI QRL  SVGS+  D E+KFGIERLKALGAT+F+GTT+P DAE WL LIEKCF+VMRCPED KVELA FLLQKG E WW+L E
Subjt:  IQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLNLIEKCFRVMRCPEDQKVELAAFLLQKGAEDWWRLFE

TrEMBL top hitse value%identityAlignment
A0A5A7SJ99 DNA/RNA polymerases superfamily protein1.8e-3256.72Show/hide
Query:  MPQTRRRGRQASIGVPEATGSRDGVPILEGESSNPHVQTEPNIQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLNLIE
        MPQ R R    +     A  +  G    + ESS PHV  E N++EQ+ +R+AQRL+  +    +DSE+K+GIERLKALGAT+F GTTNP DAE WL LIE
Subjt:  MPQTRRRGRQASIGVPEATGSRDGVPILEGESSNPHVQTEPNIQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLNLIE

Query:  KCFRVMRCPEDQKVELAAFLLQKGAEDWWRLFEA
        KCF+V RC ED+KVELAAFLLQ GAEDWW + E+
Subjt:  KCFRVMRCPEDQKVELAAFLLQKGAEDWWRLFEA

A0A5A7T1M0 Reverse transcriptase2.8e-3064.15Show/hide
Query:  EGESSNPHVQTEPNIQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLNLIEKCFRVMRCPEDQKVELAAFLLQKGAEDW
        + ESS P V  E N++EQ+ +R+AQRLV  + S  +D E+K+G ERLKALGAT+F GTTNP D EAWL LIEKCFRV R  ED+KVELAAFLLQ  AEDW
Subjt:  EGESSNPHVQTEPNIQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLNLIEKCFRVMRCPEDQKVELAAFLLQKGAEDW

Query:  WRLFEA
        WR+ E+
Subjt:  WRLFEA

A0A5A7ULX5 DNA/RNA polymerases superfamily protein7.4e-3158.33Show/hide
Query:  MPQTRRRGR---QASIGVPEATGSRDGVPILEGESSNPHVQTEPNIQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLN
        MP+ R R R   +AS    EA    +     + ESS PHV  E N++EQ+ +R+AQR V  + S  +D E+KF IERLKALG+T+F  TTNPA+AEAWL 
Subjt:  MPQTRRRGR---QASIGVPEATGSRDGVPILEGESSNPHVQTEPNIQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLN

Query:  LIEKCFRVMRCPEDQKVELAAFLLQKGAEDWW
        LIEKCFRVMRC ED+KVEL+AFLLQ GAEDWW
Subjt:  LIEKCFRVMRCPEDQKVELAAFLLQKGAEDWW

A0A5D3BB91 Reverse transcriptase2.8e-3064.15Show/hide
Query:  EGESSNPHVQTEPNIQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLNLIEKCFRVMRCPEDQKVELAAFLLQKGAEDW
        + ESS P V  E N++EQ+ +R+AQRLV  + S  +D E+K+G ERLKALGAT+F GTTNP D EAWL LIEKCFRV R  ED+KVELAAFLLQ  AEDW
Subjt:  EGESSNPHVQTEPNIQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLNLIEKCFRVMRCPEDQKVELAAFLLQKGAEDW

Query:  WRLFEA
        WR+ E+
Subjt:  WRLFEA

A0A5D3DES5 DNA/RNA polymerases superfamily protein6.1e-3356.62Show/hide
Query:  QTRRRGRQASIGVPEATGSRDGVPILEGESSNPHVQTEPNIQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLNLIEKC
        +T    R+A++G  E+          + ESS PHV  E N++EQ+ +R+AQRL+  + S  +D E+K+GIERLKALGAT+F GTTNPADAEAWL LIEKC
Subjt:  QTRRRGRQASIGVPEATGSRDGVPILEGESSNPHVQTEPNIQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLNLIEKC

Query:  FRVMRCPEDQKVELAAFLLQKG----AEDWWRLFEA
        FRV RCPED+KVELA+FLLQ G     EDWWR+ E+
Subjt:  FRVMRCPEDQKVELAAFLLQKG----AEDWWRLFEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCAAACGCGCAGGCGAGGTAGGCAAGCGAGCATTGGAGTACCTGAAGCTACTGGGAGCAGAGATGGAGTTCCAATTTTAGAGGGGGAGTCTAGTAACCCTCATGT
GCAGACTGAACCTAATATACAAGAACAGATTTTTAACAGAATAGCCCAGAGGTTGGTTGACAGTGTAGGGTCAGTATCTACTGATTCAGAGAGGAAGTTTGGCATCGAGA
GATTGAAGGCCTTAGGGGCTACATCTTTTGAGGGTACTACGAATCCTGCAGATGCAGAGGCATGGTTGAATCTAATTGAGAAATGTTTTAGGGTAATGAGGTGCCCTGAG
GACCAAAAGGTGGAGTTAGCTGCTTTCTTGCTCCAGAAAGGGGCAGAGGACTGGTGGAGACTCTTCGAGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCCAAACGCGCAGGCGAGGTAGGCAAGCGAGCATTGGAGTACCTGAAGCTACTGGGAGCAGAGATGGAGTTCCAATTTTAGAGGGGGAGTCTAGTAACCCTCATGT
GCAGACTGAACCTAATATACAAGAACAGATTTTTAACAGAATAGCCCAGAGGTTGGTTGACAGTGTAGGGTCAGTATCTACTGATTCAGAGAGGAAGTTTGGCATCGAGA
GATTGAAGGCCTTAGGGGCTACATCTTTTGAGGGTACTACGAATCCTGCAGATGCAGAGGCATGGTTGAATCTAATTGAGAAATGTTTTAGGGTAATGAGGTGCCCTGAG
GACCAAAAGGTGGAGTTAGCTGCTTTCTTGCTCCAGAAAGGGGCAGAGGACTGGTGGAGACTCTTCGAGGCTTGA
Protein sequenceShow/hide protein sequence
MPQTRRRGRQASIGVPEATGSRDGVPILEGESSNPHVQTEPNIQEQIFNRIAQRLVDSVGSVSTDSERKFGIERLKALGATSFEGTTNPADAEAWLNLIEKCFRVMRCPE
DQKVELAAFLLQKGAEDWWRLFEA