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HG10003385 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003385
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr08:448585..449337
RNA-Seq ExpressionHG10003385
SyntenyHG10003385
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004518 - nuclease activity (molecular function)
GO:0046914 - transition metal ion binding (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO61130.1 Endonuclease/exonuclease/phosphatase [Corchorus capsularis]2.8e-0944.93Show/hide
Query:  MDMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPEAWQYGSWLR
        +D+ KPL  G W+ P  D+GK W+ +KYE+L DFC+ CG+IG + K C+ VT   +S  E+  YG W++
Subjt:  MDMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPEAWQYGSWLR

OMO99383.1 hypothetical protein COLO4_13287 [Corchorus olitorius]4.8e-0937.5Show/hide
Query:  MDMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPEAWQYGSWLRFQGSNPRRRRKSPQRNEKEGSHAESSAFQTE
        MD+ KPL  G W+ P  D  + W ++KYERL DFCY CGR+G   K C F  D  + D    +YGSWLR   + P R      R  K      +    ++
Subjt:  MDMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPEAWQYGSWLRFQGSNPRRRRKSPQRNEKEGSHAESSAFQTE

Query:  NTPK
        N+ +
Subjt:  NTPK

TXG50019.1 hypothetical protein EZV62_025894 [Acer yangbiense]4.8e-0943.48Show/hide
Query:  MDMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPEAWQYGSWLR
        +D+TKPLRR + ++  GD  +  + ++YERLPD CY CGRIG V++ C+ V    + +     +GSWLR
Subjt:  MDMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPEAWQYGSWLR

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]2.5e-1049.3Show/hide
Query:  DMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPEAWQYGSWLRFQG
        D+ KPL RGI +   G  G  WI ++YERLPDF Y CGR+  ++K C+      DS  +  QYG WLRFQG
Subjt:  DMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPEAWQYGSWLRFQG

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]7.9e-1247Show/hide
Query:  MDMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPEAW-QYGSWLRFQGS----NPRRRRKSPQRNEKEGSHAESS
        +D+TKPLRRGI I   G  G  WI ++YERLPDFCY CG IG     C+     A  D  A  +YG WLRF GS       R+ KSP R +  GS + +S
Subjt:  MDMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPEAW-QYGSWLRFQGS----NPRRRRKSPQRNEKEGSHAESS

TrEMBL top hitse value%identityAlignment
A0A6J1BSZ1 uncharacterized protein LOC1110054811.2e-1049.3Show/hide
Query:  DMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPEAWQYGSWLRFQG
        D+ KPL RGI +   G  G  WI ++YERLPDF Y CGR+  ++K C+      DS  +  QYG WLRFQG
Subjt:  DMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPEAWQYGSWLRFQG

A0A6J1DU55 uncharacterized protein LOC1110231353.8e-1247Show/hide
Query:  MDMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPEAW-QYGSWLRFQGS----NPRRRRKSPQRNEKEGSHAESS
        +D+TKPLRRGI I   G  G  WI ++YERLPDFCY CG IG     C+     A  D  A  +YG WLRF GS       R+ KSP R +  GS + +S
Subjt:  MDMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPEAW-QYGSWLRFQGS----NPRRRRKSPQRNEKEGSHAESS

A0A803KPE0 Uncharacterized protein7.9e-1041.77Show/hide
Query:  MDMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPE-AWQYGSWLRFQGSNPRRR
        +D+ KP R G+++  G +Q + WI++KYERL DFC+ CGR+    K C +     + D + A+QYG WLR   ++PR+R
Subjt:  MDMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPE-AWQYGSWLRFQGSNPRRR

A0A803L0Q7 Uncharacterized protein1.4e-0938.64Show/hide
Query:  MDMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPE-AWQYGSWLRFQGSNPRRRRKSPQRNEK
        +D+ KPLRRG+++E G ++ + WI++KYERL +FC+ CGR+    K C+      D++ +  +QYG WLR    +P++R K   R  +
Subjt:  MDMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPE-AWQYGSWLRFQGSNPRRRRKSPQRNEK

A0A803L0T6 Uncharacterized protein1.8e-0941.49Show/hide
Query:  MDMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPE------AWQYGSWLRFQGSNPRRRRKSPQRNEKE
        +D+ KPLRRG++I  GG + K WI +KYERL DFC+ CG++  + K C     +A+ + E       +QYG+WLR   S  +++ KS    EKE
Subjt:  MDMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPE------AWQYGSWLRFQGSNPRRRRKSPQRNEKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATGACAAAACCCTTAAGAAGAGGAATCTGGATTGAACCAGGAGGGGATCAAGGAAAACAATGGATTAATGTTAAATATGAAAGGTTACCTGATTTCTGTTATGG
GTGTGGCAGAATTGGTCGCGTAATCAAGATTTGCAATTTTGTAACAGATGTTGCTGATTCTGATCCTGAAGCATGGCAATATGGGAGTTGGTTGAGATTTCAAGGGAGTA
ATCCAAGAAGGCGTAGAAAGAGTCCTCAAAGAAATGAGAAAGAAGGATCCCATGCTGAATCCTCAGCCTTCCAAACAGAAAATACTCCTAAAAAAGAAAATCTTGGCAAC
TCCTCAAAGATCTCAAACACAAAATCAACCTCTGCTGTCAGCAAAGGGAATCTTGACCCAAACCTTCTGAACGCAAAAGCGATTTTTGATCTCAACATTGGTCCTCCGGA
TAATGAGCCCTTTAAAGGAATTCAAGAAACCTCTTCCTGGATCAATGACTCTCAACAATCTCAGAAGATAGGGACTGTTGAACTACAGAACGAGACATTTTTAGAGGAAG
AACATATGGGGAACAAGGGTTCAATTGGAAAAAAGCCAAAAGAATGGAAAAGGAGGACCAGGTCTGAATCTAGATTCTCAAACCACCCTATGGAAACACAATATGATCAG
AAGAGAAAAGGAGTGCCTTTGTTCAATTCTTCAGCGTTCAAGAAAAAAAGGGAAACCTCTCTACCTGCATTCAGGAATGAAATGAAACATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATATGACAAAACCCTTAAGAAGAGGAATCTGGATTGAACCAGGAGGGGATCAAGGAAAACAATGGATTAATGTTAAATATGAAAGGTTACCTGATTTCTGTTATGG
GTGTGGCAGAATTGGTCGCGTAATCAAGATTTGCAATTTTGTAACAGATGTTGCTGATTCTGATCCTGAAGCATGGCAATATGGGAGTTGGTTGAGATTTCAAGGGAGTA
ATCCAAGAAGGCGTAGAAAGAGTCCTCAAAGAAATGAGAAAGAAGGATCCCATGCTGAATCCTCAGCCTTCCAAACAGAAAATACTCCTAAAAAAGAAAATCTTGGCAAC
TCCTCAAAGATCTCAAACACAAAATCAACCTCTGCTGTCAGCAAAGGGAATCTTGACCCAAACCTTCTGAACGCAAAAGCGATTTTTGATCTCAACATTGGTCCTCCGGA
TAATGAGCCCTTTAAAGGAATTCAAGAAACCTCTTCCTGGATCAATGACTCTCAACAATCTCAGAAGATAGGGACTGTTGAACTACAGAACGAGACATTTTTAGAGGAAG
AACATATGGGGAACAAGGGTTCAATTGGAAAAAAGCCAAAAGAATGGAAAAGGAGGACCAGGTCTGAATCTAGATTCTCAAACCACCCTATGGAAACACAATATGATCAG
AAGAGAAAAGGAGTGCCTTTGTTCAATTCTTCAGCGTTCAAGAAAAAAAGGGAAACCTCTCTACCTGCATTCAGGAATGAAATGAAACATTAA
Protein sequenceShow/hide protein sequence
MDMTKPLRRGIWIEPGGDQGKQWINVKYERLPDFCYGCGRIGRVIKICNFVTDVADSDPEAWQYGSWLRFQGSNPRRRRKSPQRNEKEGSHAESSAFQTENTPKKENLGN
SSKISNTKSTSAVSKGNLDPNLLNAKAIFDLNIGPPDNEPFKGIQETSSWINDSQQSQKIGTVELQNETFLEEEHMGNKGSIGKKPKEWKRRTRSESRFSNHPMETQYDQ
KRKGVPLFNSSAFKKKRETSLPAFRNEMKH