; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10003408 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003408
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRegulator of nonsense transcripts UPF3 isoform X1
Genome locationChr08:873197..880631
RNA-Seq ExpressionHG10003408
SyntenyHG10003408
Gene Ontology termsGO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (biological process)
GO:0045727 - positive regulation of translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR005120 - UPF3 domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR039722 - Nonsense-mediated mRNA decay protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039239.1 regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo var. makuwa]3.7e-27686.53Show/hide
Query:  SQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYK-DPDYLEFLKLIAKPAEHLPSAEIQLERKEAE
        +QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYK DPDYLEFLKLIAKPAEHLPSAEIQLERKEAE
Subjt:  SQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYK-DPDYLEFLKLIAKPAEHLPSAEIQLERKEAE

Query:  QSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSG
        QSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRR+DQSA SSG
Subjt:  QSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSG

Query:  IGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQRREASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPR
        IGISDVGTADFGKKKILLLKGKERDISHVSD MLQLQSATSSGNSPASASKHN RREA GS+IRSILLNNEARHGQSSSVA SHQKIQILNSDNGKRPPR
Subjt:  IGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQRREASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPR

Query:  PINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMK
        P NARSG ND+SSNEPNPSGSEGDGKRA D KFSKKELHGLGSASEKQ+KRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMK
Subjt:  PINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMK

Query:  EDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHVVLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEVFL
        EDIHGSRT DVTT VSGRNSSVENGC                                  SVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE   
Subjt:  EDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHVVLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEVFL

Query:  FYYIDKDMYYFPLDCDNVYVIQQIMASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRFHELDCKICNCFVVYRWLQNTRFSG
                               I+ASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRF ELDCK CNCFVVYRWLQNTRFSG
Subjt:  FYYIDKDMYYFPLDCDNVYVIQQIMASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRFHELDCKICNCFVVYRWLQNTRFSG

TYK00427.1 regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo var. makuwa]1.8e-27085.5Show/hide
Query:  SQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQ
        +QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQ
Subjt:  SQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQ

Query:  SGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSGI
        SGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKK      YILKDSVKNTNRRDKSNFILVPRR+DQSA SSGI
Subjt:  SGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSGI

Query:  GISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQRREASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRP
        GISDVGTADFGKKKILLLKGKERDISHVSD MLQLQSATSSGNSPASASKHN RREA GS+IRSILLNNEARHGQSSSVA SHQKIQILNSDNGKRPPRP
Subjt:  GISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQRREASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRP

Query:  INARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKE
         NARSG ND+SSNEPNPSGSEGDGKRA D KFSKKELHGLGSASEKQ+KRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKE
Subjt:  INARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKE

Query:  DIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHVVLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEVFLF
        DIHGSRT DVTT VSGRNSSVEN                                   GSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE    
Subjt:  DIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHVVLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEVFLF

Query:  YYIDKDMYYFPLDCDNVYVIQQIMASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRFHELDCKICNCFVVYRWLQNTRFSG
                              I+ASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRF ELDCK CNCFVVYRWLQNTRFSG
Subjt:  YYIDKDMYYFPLDCDNVYVIQQIMASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRFHELDCKICNCFVVYRWLQNTRFSG

XP_008459659.1 PREDICTED: regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo]3.2e-25989.48Show/hide
Query:  MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKR
        SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKR
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKR

Query:  GMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQR
        GMEKKK      YILKDSVKNTNRRDKSNFILVPRR+DQSA SSGIGISDVG ADFGKKKILLLKGKERDISHVSD MLQLQSATSSGNSPASASKHN R
Subjt:  GMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQR

Query:  REASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNK
        REA GS+IRSILLNNEARHGQSSSVA SHQKIQILNSDNGKRPPRP NARSG ND+SSNEPNPSGSEGDGKRA D KFSKKELHGLGSASEKQEKRIRNK
Subjt:  REASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNK

Query:  DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHV
        DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRT DVTT VSGRNSSVEN                               
Subjt:  DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHV

Query:  VLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE
            GSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE
Subjt:  VLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE

XP_011656113.1 regulator of nonsense transcripts UPF3 isoform X1 [Cucumis sativus]8.4e-26089.67Show/hide
Query:  MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKR
        SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKR
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKR

Query:  GMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQR
        GMEKKK      YILKDSVKNTNRRDKSNFILVPRREDQSATSS IGISDVGTADFGKKKILLLKGKERDISHVSD MLQLQSATSSGNSPASASKHN R
Subjt:  GMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQR

Query:  REASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNK
        REA G +IRSILLNNEARHGQSSSVA SHQKIQILNSDNGKRPPRP NARSG ND+SSNEPNPSGSEGDGKRASD KFSKKELHGLGSASEKQEKRIRNK
Subjt:  REASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNK

Query:  DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHV
        DRPDRGVWAPRSRSDASVSQLEESSV QSSHLLSDSVEA+RGEMKEDIHGSRTGDVTT VSGRNSSVEN                               
Subjt:  DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHV

Query:  VLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE
            GSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE
Subjt:  VLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE

XP_038890175.1 regulator of nonsense transcripts UPF3 isoform X1 [Benincasa hispida]4.2e-25989.3Show/hide
Query:  MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRF GRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGH+FVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKR
        SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKE PIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPE NSMKR
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKR

Query:  GMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQR
        GMEKKK      YILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGISDV TADFGKKKILLLKGKERDISHVSDGMLQLQSATSS  SPASASKHNQR
Subjt:  GMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQR

Query:  REASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNK
        REASGSMIRSILLNNEARHGQ+SSVA SH KIQILNSDNGKRPPRPINARSG NDMSSNEPNPSGSEGDGKRA D KFSKKELHGLGS +EKQEKRIRNK
Subjt:  REASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNK

Query:  DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHV
        DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKED+HGSRTGDVTTTVSGRNSSVEN                               
Subjt:  DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHV

Query:  VLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE
            GSVRHVGRRGA HVMKDDGSLNPNEGKPSKRGVAGGHE
Subjt:  VLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE

TrEMBL top hitse value%identityAlignment
A0A0A0KSY5 Smg4_UPF3 domain-containing protein4.1e-26089.67Show/hide
Query:  MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKR
        SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKR
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKR

Query:  GMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQR
        GMEKKK      YILKDSVKNTNRRDKSNFILVPRREDQSATSS IGISDVGTADFGKKKILLLKGKERDISHVSD MLQLQSATSSGNSPASASKHN R
Subjt:  GMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQR

Query:  REASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNK
        REA G +IRSILLNNEARHGQSSSVA SHQKIQILNSDNGKRPPRP NARSG ND+SSNEPNPSGSEGDGKRASD KFSKKELHGLGSASEKQEKRIRNK
Subjt:  REASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNK

Query:  DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHV
        DRPDRGVWAPRSRSDASVSQLEESSV QSSHLLSDSVEA+RGEMKEDIHGSRTGDVTT VSGRNSSVEN                               
Subjt:  DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHV

Query:  VLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE
            GSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE
Subjt:  VLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE

A0A1S3CB69 regulator of nonsense transcripts UPF3 isoform X11.5e-25989.48Show/hide
Query:  MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKR
        SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKR
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKR

Query:  GMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQR
        GMEKKK      YILKDSVKNTNRRDKSNFILVPRR+DQSA SSGIGISDVG ADFGKKKILLLKGKERDISHVSD MLQLQSATSSGNSPASASKHN R
Subjt:  GMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQR

Query:  REASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNK
        REA GS+IRSILLNNEARHGQSSSVA SHQKIQILNSDNGKRPPRP NARSG ND+SSNEPNPSGSEGDGKRA D KFSKKELHGLGSASEKQEKRIRNK
Subjt:  REASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNK

Query:  DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHV
        DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRT DVTT VSGRNSSVEN                               
Subjt:  DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHV

Query:  VLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE
            GSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE
Subjt:  VLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE

A0A1S3CBX5 regulator of nonsense transcripts UPF3 isoform X22.0e-25488.38Show/hide
Query:  MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKR
        SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKR
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKR

Query:  GMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQR
        GMEKKK      YILKDSVKNTNRRDKSNFILVPRR+DQSA SSGIGISDVG ADFGKKKILLLKGKERDISH       LQSATSSGNSPASASKHN R
Subjt:  GMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQR

Query:  REASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNK
        REA GS+IRSILLNNEARHGQSSSVA SHQKIQILNSDNGKRPPRP NARSG ND+SSNEPNPSGSEGDGKRA D KFSKKELHGLGSASEKQEKRIRNK
Subjt:  REASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNK

Query:  DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHV
        DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRT DVTT VSGRNSSVEN                               
Subjt:  DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHV

Query:  VLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE
            GSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE
Subjt:  VLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE

A0A5A7TD91 Regulator of nonsense transcripts UPF3 isoform X11.8e-27686.53Show/hide
Query:  SQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYK-DPDYLEFLKLIAKPAEHLPSAEIQLERKEAE
        +QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYK DPDYLEFLKLIAKPAEHLPSAEIQLERKEAE
Subjt:  SQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYK-DPDYLEFLKLIAKPAEHLPSAEIQLERKEAE

Query:  QSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSG
        QSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRR+DQSA SSG
Subjt:  QSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSG

Query:  IGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQRREASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPR
        IGISDVGTADFGKKKILLLKGKERDISHVSD MLQLQSATSSGNSPASASKHN RREA GS+IRSILLNNEARHGQSSSVA SHQKIQILNSDNGKRPPR
Subjt:  IGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQRREASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPR

Query:  PINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMK
        P NARSG ND+SSNEPNPSGSEGDGKRA D KFSKKELHGLGSASEKQ+KRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMK
Subjt:  PINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMK

Query:  EDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHVVLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEVFL
        EDIHGSRT DVTT VSGRNSSVENGC                                  SVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE   
Subjt:  EDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHVVLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEVFL

Query:  FYYIDKDMYYFPLDCDNVYVIQQIMASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRFHELDCKICNCFVVYRWLQNTRFSG
                               I+ASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRF ELDCK CNCFVVYRWLQNTRFSG
Subjt:  FYYIDKDMYYFPLDCDNVYVIQQIMASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRFHELDCKICNCFVVYRWLQNTRFSG

A0A5D3BML0 Regulator of nonsense transcripts UPF3 isoform X18.7e-27185.5Show/hide
Query:  SQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQ
        +QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQ
Subjt:  SQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQ

Query:  SGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSGI
        SGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKK      YILKDSVKNTNRRDKSNFILVPRR+DQSA SSGI
Subjt:  SGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSGI

Query:  GISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQRREASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRP
        GISDVGTADFGKKKILLLKGKERDISHVSD MLQLQSATSSGNSPASASKHN RREA GS+IRSILLNNEARHGQSSSVA SHQKIQILNSDNGKRPPRP
Subjt:  GISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQRREASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRP

Query:  INARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKE
         NARSG ND+SSNEPNPSGSEGDGKRA D KFSKKELHGLGSASEKQ+KRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKE
Subjt:  INARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKE

Query:  DIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHVVLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEVFLF
        DIHGSRT DVTT VSGRNSSVEN                                   GSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE    
Subjt:  DIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHVVLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEVFLF

Query:  YYIDKDMYYFPLDCDNVYVIQQIMASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRFHELDCKICNCFVVYRWLQNTRFSG
                              I+ASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRF ELDCK CNCFVVYRWLQNTRFSG
Subjt:  YYIDKDMYYFPLDCDNVYVIQQIMASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRFHELDCKICNCFVVYRWLQNTRFSG

SwissProt top hitse value%identityAlignment
B0S733 Regulator of nonsense transcripts 3A3.5e-1934.13Show/hide
Query:  TKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS-TKKD
        +KVVIR LPPSL    L  H+       F++  + P   S     ++RAYI+F  PED+  F + FDG+VF++ KG +Y AVVE+AP Q+V +    KKD
Subjt:  TKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS-TKKD

Query:  GREGTIYKDPDYLEFL--------KLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSM
         + GTI +DP+Y  FL        K +A P   L   EI+ + +E      AK T   TPL+E+++ K+  +   +      + +R      ++ E    
Subjt:  GREGTIYKDPDYLEFL--------KLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSM

Query:  KRGMEKKK
        +R  E++K
Subjt:  KRGMEKKK

Q10267 Nonsense-mediated mRNA decay protein 37.2e-1225.19Show/hide
Query:  KVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTS--QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD
        KV++ +LPP+LP       I+  F     W  +  GK +   + +  + AY+ F     V EF   + GH F+++K   Y+A+V  AP Q++P S  K D
Subjt:  KVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTS--QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD

Query:  GREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKR--AVESGTQGSSVPRKVKRGGAASSRKPESNSMKRG---
          EG++ +DP + EF              + +   + A      ++    TPL++++ +K+   VE G    S      +     + KP SN+ K G   
Subjt:  GREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKR--AVESGTQGSSVPRKVKRGGAASSRKPESNSMKRG---

Query:  MEKKKACATFNYILKDSVKNTNRRDKSNFILVPRR---EDQSATSSGIGISDVGTAD---FGKKKI
         E KK+           +K     D+      P++    + +A+ +    SD  T +    GK+KI
Subjt:  MEKKKACATFNYILKDSVKNTNRRDKSNFILVPRR---EDQSATSSGIGISDVGTAD---FGKKKI

Q9BZI7 Regulator of nonsense transcripts 3B1.6e-1626.74Show/hide
Query:  TKVVIRHLPPSLPHSDLFHHI-----HDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS
        +KVVIR LPP+L    L  H+     HD F        +    TS     YARAYI+F   ED+  F + FDG+VF++ KG +Y A+VE+AP Q+  +  
Subjt:  TKVVIRHLPPSLPHSDLFHHI-----HDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS

Query:  TKK-DGREGTIYKDPDYLEFLKLIAKPAEHLPSA-EIQLERKEAEQSG--AAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSM
        TKK D + GTI  DP+Y +FL+  A   E + S  E  LE  EA+     A K TP+++ L    R +       +   + RK +R       K E    
Subjt:  TKK-DGREGTIYKDPDYLEFLKLIAKPAEHLPSA-EIQLERKEAEQSG--AAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSM

Query:  KRGMEKKKACATF--NYILKDSVKNTNRR------DKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNS
        ++ +EK K          LKD  K    R      ++ N +  P + D+               +  K++    K K+ D  ++SD     QS T    S
Subjt:  KRGMEKKKACATF--NYILKDSVKNTNRR------DKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNS

Query:  PASASKHNQRREASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSAS
         +       +R    S  R               +    ++++    +  ++  R    ++        +      E D  R    K    E  G    +
Subjt:  PASASKHNQRREASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSAS

Query:  EKQEK-----RIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSS
        EK+E+     RIRNKDRP   ++ P +RS   +   ++S+ S  S
Subjt:  EKQEK-----RIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSS

Q9FVW4 Regulator of nonsense transcripts UPF32.1e-9642.7Show/hide
Query:  MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MK+PL++ KVV+RHLPPSL  SDL   I  RFA R+NW  +RPGK+S K+Q+Y+RAY+ F  PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+
Subjt:  MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQG-SSVPRKVKRGGAASSRKPESNSMK
         S KKD REG+I KDPDYLEFLK+IA+P E+LPSAEIQLER+EAEQSGA+K  PIVTPLMEF+RQKRA   G QG S + R  +R    S+ KP     K
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQG-SSVPRKVKRGGAASSRKPESNSMK

Query:  RGMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSG-----------IGISDVG---TADFGKKKILLLKGKERDISHVSDGMLQLQSAT
        R  EKKK      Y+ K+S KN  R+  ++ +   + + + + SSG           I  S  G   T D GKKKILLL+ K+RD         +    T
Subjt:  RGMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSG-----------IGISDVG---TADFGKKKILLLKGKERDISHVSDGMLQLQSAT

Query:  SSGNSPASASKHNQRREASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHG
        +   + ++ S+ NQ+ +  G +I+ ILL N++R  QSS+   S Q+++   ++N KRP RP N R+G                            K+ H 
Subjt:  SSGNSPASASKHNQRREASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHG

Query:  LGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIR
         G+ SEKQE+R RNKDRPDR +WAP  R D S    E+  +S + +          GE+K+ +   R+G+V  +  G   ++EN                
Subjt:  LGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIR

Query:  KFKGYFLLLVNQKHVVLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGG
                           GS RH  RR  G   K++  +   EGK S+RG  GG
Subjt:  KFKGYFLLLVNQKHVVLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGG

Q9H1J1 Regulator of nonsense transcripts 3A2.6e-1429.63Show/hide
Query:  TKVVIRHLPPSLPHSDLFHHI-----HDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS
        +KVVIR LPP L    L   +     HD F        +     S     Y+RAYI+F  P+D+  F + FDG++F++ KG +Y AVVE+AP Q++ +  
Subjt:  TKVVIRHLPPSLPHSDLFHHI-----HDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS

Query:  -TKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGS--------SVPRKVKRGGAASSRKP
          KKD + G+I  DP+Y +FL+      E   SA  +    E E           TPL+E+++ ++  +   +           + +K  R      R+ 
Subjt:  -TKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGS--------SVPRKVKRGGAASSRKP

Query:  ESNSMKRGMEKKKACA
        E    K+  +K+K  A
Subjt:  ESNSMKRGMEKKKACA

Arabidopsis top hitse value%identityAlignment
AT1G33980.1 Smg-4/UPF3 family protein1.5e-9742.7Show/hide
Query:  MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MK+PL++ KVV+RHLPPSL  SDL   I  RFA R+NW  +RPGK+S K+Q+Y+RAY+ F  PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+
Subjt:  MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQG-SSVPRKVKRGGAASSRKPESNSMK
         S KKD REG+I KDPDYLEFLK+IA+P E+LPSAEIQLER+EAEQSGA+K  PIVTPLMEF+RQKRA   G QG S + R  +R    S+ KP     K
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQG-SSVPRKVKRGGAASSRKPESNSMK

Query:  RGMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSG-----------IGISDVG---TADFGKKKILLLKGKERDISHVSDGMLQLQSAT
        R  EKKK      Y+ K+S KN  R+  ++ +   + + + + SSG           I  S  G   T D GKKKILLL+ K+RD         +    T
Subjt:  RGMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSG-----------IGISDVG---TADFGKKKILLLKGKERDISHVSDGMLQLQSAT

Query:  SSGNSPASASKHNQRREASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHG
        +   + ++ S+ NQ+ +  G +I+ ILL N++R  QSS+   S Q+++   ++N KRP RP N R+G                            K+ H 
Subjt:  SSGNSPASASKHNQRREASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHG

Query:  LGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIR
         G+ SEKQE+R RNKDRPDR +WAP  R D S    E+  +S + +          GE+K+ +   R+G+V  +  G   ++EN                
Subjt:  LGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIR

Query:  KFKGYFLLLVNQKHVVLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGG
                           GS RH  RR  G   K++  +   EGK S+RG  GG
Subjt:  KFKGYFLLLVNQKHVVLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGG

AT1G33980.2 Smg-4/UPF3 family protein1.4e-9542.37Show/hide
Query:  MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKT--SQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRV
        MK+PL++ KVV+RHLPPSL  SDL   I  RFA R+NW  +RPGK+    K+Q+Y+RAY+ F  PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRV
Subjt:  MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKT--SQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRV

Query:  PRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQG-SSVPRKVKRGGAASSRKPESNS
        P+ S KKD REG+I KDPDYLEFLK+IA+P E+LPSAEIQLER+EAEQSGA+K  PIVTPLMEF+RQKRA   G QG S + R  +R    S+ KP    
Subjt:  PRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQG-SSVPRKVKRGGAASSRKPESNS

Query:  MKRGMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSG-----------IGISDVG---TADFGKKKILLLKGKERDISHVSDGMLQLQS
         KR  EKKK      Y+ K+S KN  R+  ++ +   + + + + SSG           I  S  G   T D GKKKILLL+ K+RD         +   
Subjt:  MKRGMEKKKACATFNYILKDSVKNTNRRDKSNFILVPRREDQSATSSG-----------IGISDVG---TADFGKKKILLLKGKERDISHVSDGMLQLQS

Query:  ATSSGNSPASASKHNQRREASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKEL
         T+   + ++ S+ NQ+ +  G +I+ ILL N++R  QSS+   S Q+++   ++N KRP RP N R+G                            K+ 
Subjt:  ATSSGNSPASASKHNQRREASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKEL

Query:  HGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTY
        H  G+ SEKQE+R RNKDRPDR +WAP  R D S    E+  +S + +          GE+K+ +   R+G+V  +  G   ++EN              
Subjt:  HGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTY

Query:  IRKFKGYFLLLVNQKHVVLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGG
                             GS RH  RR  G   K++  +   EGK S+RG  GG
Subjt:  IRKFKGYFLLLVNQKHVVLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGACCCGTTGGAGAGAACCAAAGTAGTGATTAGGCACTTGCCTCCTTCTCTTCCTCACTCAGATCTCTTCCACCATATTCATGATCGATTCGCTGGTCGCTTCAA
TTGGTCTTACTATCGTCCCGGAAAGACCAGTCAGAAGGACCAGAGATACGCTCGAGCCTACATAGACTTTACCAGACCTGAAGATGTTTTTGAGTTTGCTGAGTTCTTTG
ATGGCCATGTTTTCGTTAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCACCTTCCCAGCGTGTTCCCAGATCATCTACCAAAAAAGATGGTCGTGAGGGG
ACAATATACAAAGATCCAGATTATTTGGAGTTTCTCAAACTTATTGCAAAGCCTGCTGAGCATCTTCCAAGTGCTGAAATACAGTTGGAAAGGAAAGAAGCCGAGCAATC
TGGTGCTGCAAAAGAAACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGCGGAACACAGGGATCTTCAGTACCTCGGAAGGTCAAAA
GAGGTGGGGCAGCATCCTCTAGAAAGCCTGAGTCGAATTCCATGAAGAGAGGGATGGAGAAGAAGAAGGCATGTGCTACTTTCAATTATATTTTAAAGGACAGTGTGAAG
AACACAAACCGCAGAGACAAGTCAAATTTCATTTTGGTGCCCAGGCGAGAGGATCAGTCAGCTACTTCAAGTGGTATTGGAATTTCAGATGTTGGTACAGCTGACTTTGG
AAAGAAAAAAATTCTGCTTCTCAAGGGGAAAGAGCGAGATATATCTCATGTTTCTGATGGCATGTTACAGTTGCAGAGCGCTACATCTTCTGGGAATTCTCCTGCAAGTG
CATCAAAACATAATCAGAGGCGTGAGGCTAGTGGAAGCATGATCAGAAGCATTCTTTTGAATAATGAAGCACGTCATGGACAGAGTTCATCAGTAGCTCACTCTCATCAA
AAAATTCAGATCCTGAATTCAGACAACGGGAAGCGACCACCTCGTCCCATTAATGCTCGATCTGGGCCTAATGATATGTCCAGTAATGAACCAAATCCATCTGGTTCAGA
AGGGGATGGAAAAAGGGCTTCAGACATTAAGTTTAGTAAAAAGGAACTTCATGGCCTGGGTAGTGCTAGTGAGAAGCAAGAAAAACGAATAAGAAACAAAGATAGACCTG
ATCGTGGGGTCTGGGCGCCACGCAGTCGTTCAGATGCCTCAGTCTCACAACTTGAGGAATCCTCTGTTTCACAATCTAGTCATTTGCTTTCTGACTCAGTTGAAGCATAC
CGCGGGGAAATGAAAGAAGATATTCATGGAAGCAGGACTGGGGATGTTACAACCACTGTGAGTGGGCGTAACAGTTCAGTGGAGAATGGTTGTACTTTCTCACAAACTCC
TCTTATGTTGTCCACCTATATTAGGAAATTCAAGGGGTACTTTCTACTTTTAGTTAATCAAAAACATGTTGTGCTCTCTTTAGGTTCTGTTAGACATGTTGGACGTCGCG
GGGCTGGCCATGTTATGAAGGATGATGGGTCTTTGAACCCAAATGAAGGGAAGCCATCCAAAAGAGGTGTTGCTGGTGGTCATGAGGTCTTTTTGTTTTATTATATTGAT
AAGGACATGTATTATTTTCCATTGGACTGTGACAATGTGTATGTTATCCAACAGATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGATTATCTCCA
TTCTGAGGACTTAATGCACATCCTCAGAAGGCATCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCATGAACTGGATTGCAAGATTTGCA
ATTGTTTCGTCGTATACAGGTGGTTACAAAACACAAGGTTCTCTGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGACCCGTTGGAGAGAACCAAAGTAGTGATTAGGCACTTGCCTCCTTCTCTTCCTCACTCAGATCTCTTCCACCATATTCATGATCGATTCGCTGGTCGCTTCAA
TTGGTCTTACTATCGTCCCGGAAAGACCAGTCAGAAGGACCAGAGATACGCTCGAGCCTACATAGACTTTACCAGACCTGAAGATGTTTTTGAGTTTGCTGAGTTCTTTG
ATGGCCATGTTTTCGTTAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCACCTTCCCAGCGTGTTCCCAGATCATCTACCAAAAAAGATGGTCGTGAGGGG
ACAATATACAAAGATCCAGATTATTTGGAGTTTCTCAAACTTATTGCAAAGCCTGCTGAGCATCTTCCAAGTGCTGAAATACAGTTGGAAAGGAAAGAAGCCGAGCAATC
TGGTGCTGCAAAAGAAACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGCGGAACACAGGGATCTTCAGTACCTCGGAAGGTCAAAA
GAGGTGGGGCAGCATCCTCTAGAAAGCCTGAGTCGAATTCCATGAAGAGAGGGATGGAGAAGAAGAAGGCATGTGCTACTTTCAATTATATTTTAAAGGACAGTGTGAAG
AACACAAACCGCAGAGACAAGTCAAATTTCATTTTGGTGCCCAGGCGAGAGGATCAGTCAGCTACTTCAAGTGGTATTGGAATTTCAGATGTTGGTACAGCTGACTTTGG
AAAGAAAAAAATTCTGCTTCTCAAGGGGAAAGAGCGAGATATATCTCATGTTTCTGATGGCATGTTACAGTTGCAGAGCGCTACATCTTCTGGGAATTCTCCTGCAAGTG
CATCAAAACATAATCAGAGGCGTGAGGCTAGTGGAAGCATGATCAGAAGCATTCTTTTGAATAATGAAGCACGTCATGGACAGAGTTCATCAGTAGCTCACTCTCATCAA
AAAATTCAGATCCTGAATTCAGACAACGGGAAGCGACCACCTCGTCCCATTAATGCTCGATCTGGGCCTAATGATATGTCCAGTAATGAACCAAATCCATCTGGTTCAGA
AGGGGATGGAAAAAGGGCTTCAGACATTAAGTTTAGTAAAAAGGAACTTCATGGCCTGGGTAGTGCTAGTGAGAAGCAAGAAAAACGAATAAGAAACAAAGATAGACCTG
ATCGTGGGGTCTGGGCGCCACGCAGTCGTTCAGATGCCTCAGTCTCACAACTTGAGGAATCCTCTGTTTCACAATCTAGTCATTTGCTTTCTGACTCAGTTGAAGCATAC
CGCGGGGAAATGAAAGAAGATATTCATGGAAGCAGGACTGGGGATGTTACAACCACTGTGAGTGGGCGTAACAGTTCAGTGGAGAATGGTTGTACTTTCTCACAAACTCC
TCTTATGTTGTCCACCTATATTAGGAAATTCAAGGGGTACTTTCTACTTTTAGTTAATCAAAAACATGTTGTGCTCTCTTTAGGTTCTGTTAGACATGTTGGACGTCGCG
GGGCTGGCCATGTTATGAAGGATGATGGGTCTTTGAACCCAAATGAAGGGAAGCCATCCAAAAGAGGTGTTGCTGGTGGTCATGAGGTCTTTTTGTTTTATTATATTGAT
AAGGACATGTATTATTTTCCATTGGACTGTGACAATGTGTATGTTATCCAACAGATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGATTATCTCCA
TTCTGAGGACTTAATGCACATCCTCAGAAGGCATCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCATGAACTGGATTGCAAGATTTGCA
ATTGTTTCGTCGTATACAGGTGGTTACAAAACACAAGGTTCTCTGGTTGA
Protein sequenceShow/hide protein sequence
MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREG
TIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACATFNYILKDSVK
NTNRRDKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQRREASGSMIRSILLNNEARHGQSSSVAHSHQ
KIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAY
RGEMKEDIHGSRTGDVTTTVSGRNSSVENGCTFSQTPLMLSTYIRKFKGYFLLLVNQKHVVLSLGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEVFLFYYID
KDMYYFPLDCDNVYVIQQIMASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRFHELDCKICNCFVVYRWLQNTRFSG