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HG10003415 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003415
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionAgamous-like MADS-box protein AGL12
Genome locationChr08:958232..964214
RNA-Seq ExpressionHG10003415
SyntenyHG10003415
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR002487 - Transcription factor, K-box
IPR033896 - MADS MEF2-like
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039245.1 agamous-like MADS-box protein AGL12 [Cucumis melo var. makuwa]7.4e-4666.88Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------
        MARGKVQMK+IENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIG+FIFSAHGKLYELATKG                                       
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------

Query:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQAF
                 NALGGGG EGIMRLDELDMFEKQLEIWICQVRSTKMKFM EEIEALRNQ F
Subjt:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQAF

XP_011656111.1 agamous-like MADS-box protein AGL12 [Cucumis sativus]7.4e-4666.25Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------
        MARGKVQMK+IENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIG+FIFSAHGKLYELATKG                                       
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------

Query:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQAF
                 NALGGGG EGIM LDELD+FEKQLEIWICQVRSTKMKFMCEEIEALRNQ F
Subjt:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQAF

XP_016902413.1 PREDICTED: agamous-like MADS-box protein AGL12 [Cucumis melo]2.8e-4567.09Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------
        MARGKVQMK+IENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIG+FIFSAHGKLYELATKG                                       
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------

Query:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ
                 NALGGGG EGIMRLDELDMFEKQLEIWICQVRSTKMKFM EEIEALRNQ
Subjt:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ

XP_022973991.1 agamous-like MADS-box protein AGL12 [Cucurbita maxima]5.3e-4465.19Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------
        MARGKVQ+K+IENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG                                       
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------

Query:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ
                 NALGGGG EGI  LDELDM EKQLEIWICQVRSTKMKFMCEEI+ALRNQ
Subjt:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ

XP_038891170.1 agamous-like MADS-box protein AGL12 [Benincasa hispida]1.5e-4668.35Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------
        MARGKVQMK+IENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG                                       
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------

Query:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ
                 NALGGGGAEGIM LDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ
Subjt:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ

TrEMBL top hitse value%identityAlignment
A0A0A0KW77 Uncharacterized protein3.6e-4666.25Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------
        MARGKVQMK+IENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIG+FIFSAHGKLYELATKG                                       
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------

Query:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQAF
                 NALGGGG EGIM LDELD+FEKQLEIWICQVRSTKMKFMCEEIEALRNQ F
Subjt:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQAF

A0A1S4E2G4 agamous-like MADS-box protein AGL121.4e-4567.09Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------
        MARGKVQMK+IENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIG+FIFSAHGKLYELATKG                                       
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------

Query:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ
                 NALGGGG EGIMRLDELDMFEKQLEIWICQVRSTKMKFM EEIEALRNQ
Subjt:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ

A0A5A7TCW0 Agamous-like MADS-box protein AGL123.6e-4666.88Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------
        MARGKVQMK+IENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIG+FIFSAHGKLYELATKG                                       
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------

Query:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQAF
                 NALGGGG EGIMRLDELDMFEKQLEIWICQVRSTKMKFM EEIEALRNQ F
Subjt:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQAF

A0A6J1ECC1 agamous-like MADS-box protein AGL122.6e-4465.19Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------
        MARGKVQ+K+IENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG                                       
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------

Query:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ
                 NALGGGG EGI  LDELDM EKQLEIWICQVRSTKMKFMCEEI+ALRNQ
Subjt:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ

A0A6J1IA69 agamous-like MADS-box protein AGL122.6e-4465.19Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------
        MARGKVQ+K+IENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG                                       
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG---------------------------------------

Query:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ
                 NALGGGG EGI  LDELDM EKQLEIWICQVRSTKMKFMCEEI+ALRNQ
Subjt:  ---------NALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ

SwissProt top hitse value%identityAlignment
A2YQK9 MADS-box transcription factor 265.0e-2946.45Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG-----------------NALG------------------
        MARGKVQ+++IENPVHRQVTFCKRRAGLLKKA+ELS+LC+A+IG+ IFSAHGKLY+LAT G                 NA G                  
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG-----------------NALG------------------

Query:  ----------GGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ
                  G  A   M ++EL+  E+ LEIW+  +RS KM+ M +EI+AL+++
Subjt:  ----------GGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ

Q0J8G8 MADS-box transcription factor 265.0e-2946.45Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG-----------------NALG------------------
        MARGKVQ+++IENPVHRQVTFCKRRAGLLKKA+ELS+LC+A+IG+ IFSAHGKLY+LAT G                 NA G                  
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG-----------------NALG------------------

Query:  ----------GGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ
                  G  A   M ++EL+  E+ LEIW+  +RS KM+ M +EI+AL+++
Subjt:  ----------GGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ

Q2QW55 MADS-box transcription factor 332.6e-3048.72Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG-----------NALGG-----------------------
        M RGKVQM++IENPVHRQVTFCKRR GLLKKA+ELSVLCDA++GV IFS+ GKL+ELAT G           N  GG                       
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG-----------NALGG-----------------------

Query:  ------------GGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ
                    GG  G M LD+L   EK LE+WI Q+R+TKM+ M +EI+ LRN+
Subjt:  ------------GGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ

Q38841 Agamous-like MADS-box protein AGL127.0e-3148.17Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG----------NALGG------------------------
        MARGK+Q+K+IENPVHRQVTFCKRR GLLKKAKELSVLCDAEIGV IFS  GKL+ELATKG             GG                        
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG----------NALGG------------------------

Query:  --------------------GGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ
                            GG +G M L+EL + EK LE WI Q+RS KM  M +EI++LRN+
Subjt:  --------------------GGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ

Q7XUN2 MADS-box transcription factor 178.0e-1938.27Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG-------------------NALGGGGAE-----------
        M RG+V++K+IEN ++RQVTF KRR GLLKKA ELSVLCDAE+ + IFS+ GKLYE  + G                   +AL GG  +           
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG-------------------NALGGGGAE-----------

Query:  -----------------GIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQAFRQL
                         G + + EL   EKQLE  + Q R  K + M E+++ LR +  RQL
Subjt:  -----------------GIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQAFRQL

Arabidopsis top hitse value%identityAlignment
AT1G71692.1 AGAMOUS-like 125.0e-3248.17Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG----------NALGG------------------------
        MARGK+Q+K+IENPVHRQVTFCKRR GLLKKAKELSVLCDAEIGV IFS  GKL+ELATKG             GG                        
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG----------NALGG------------------------

Query:  --------------------GGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ
                            GG +G M L+EL + EK LE WI Q+RS KM  M +EI++LRN+
Subjt:  --------------------GGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ

AT2G45650.1 AGAMOUS-like 62.0e-1767.21Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG
        M RG+V+MK+IEN ++RQVTF KRR GLLKKA ELSVLCDAE+ + IFS+ GKLYE  + G
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKG

AT3G02310.1 K-box region and MADS-box transcription factor family protein2.6e-1762.5Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGNAL
        M RG+V++K+IEN ++RQVTF KRR GLLKKA ELSVLCDAE+ + +FS  GKLYE  +  N L
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGNAL

AT5G15800.1 K-box region and MADS-box transcription factor family protein4.1e-1836.31Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGNAL---------GGGGAE---------------------
        M RG+V++K+IEN ++RQVTF KRR GLLKKA ELSVLCDAE+ + IFS  GKLYE  +  N L           G  E                     
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGNAL---------GGGGAE---------------------

Query:  -----------------GIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ
                         G +   EL+  E+QL+  + QVRS K ++M +++  L+N+
Subjt:  -----------------GIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ

AT5G15800.2 K-box region and MADS-box transcription factor family protein4.1e-1836.31Show/hide
Query:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGNAL---------GGGGAE---------------------
        M RG+V++K+IEN ++RQVTF KRR GLLKKA ELSVLCDAE+ + IFS  GKLYE  +  N L           G  E                     
Subjt:  MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGNAL---------GGGGAE---------------------

Query:  -----------------GIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ
                         G +   EL+  E+QL+  + QVRS K ++M +++  L+N+
Subjt:  -----------------GIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGTGGGAAGGTTCAAATGAAGAAGATTGAGAATCCAGTGCATAGACAAGTCACTTTCTGCAAGCGTCGAGCTGGGCTTCTTAAGAAGGCTAAGGAGCTCTCTGT
TCTTTGCGATGCTGAAATTGGAGTTTTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACTAAAGGGAATGCTTTGGGAGGAGGAGGAGCTGAAGGAATAATGA
GATTGGATGAGCTTGATATGTTTGAGAAGCAACTTGAGATTTGGATTTGTCAAGTGCGTTCTACAAAGATGAAGTTCATGTGTGAAGAGATTGAAGCACTAAGGAACCAG
GCTTTCCGTCAGCTGGTGGTTGTTTGCTTCACTTTGTGCTTGAAGGTGGCTGGTTGGATGGCAGGATGTCCAGAATACTCTCTCGAGCCTTTTGTCTCCAGCGATCTTTC
CCAGAAGAGTATGCATAGAGGATTTCAGAATGGGATGATCTATCTCTATGATTTTCAATGTAAAGAGTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGTGGGAAGGTTCAAATGAAGAAGATTGAGAATCCAGTGCATAGACAAGTCACTTTCTGCAAGCGTCGAGCTGGGCTTCTTAAGAAGGCTAAGGAGCTCTCTGT
TCTTTGCGATGCTGAAATTGGAGTTTTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACTAAAGGGAATGCTTTGGGAGGAGGAGGAGCTGAAGGAATAATGA
GATTGGATGAGCTTGATATGTTTGAGAAGCAACTTGAGATTTGGATTTGTCAAGTGCGTTCTACAAAGATGAAGTTCATGTGTGAAGAGATTGAAGCACTAAGGAACCAG
GCTTTCCGTCAGCTGGTGGTTGTTTGCTTCACTTTGTGCTTGAAGGTGGCTGGTTGGATGGCAGGATGTCCAGAATACTCTCTCGAGCCTTTTGTCTCCAGCGATCTTTC
CCAGAAGAGTATGCATAGAGGATTTCAGAATGGGATGATCTATCTCTATGATTTTCAATGTAAAGAGTCATAA
Protein sequenceShow/hide protein sequence
MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGNALGGGGAEGIMRLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQ
AFRQLVVVCFTLCLKVAGWMAGCPEYSLEPFVSSDLSQKSMHRGFQNGMIYLYDFQCKES