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HG10003423 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003423
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRING/U-box superfamily protein
Genome locationChr08:1109569..1109850
RNA-Seq ExpressionHG10003423
SyntenyHG10003423
Gene Ontology termsGO:0000209 - protein polyubiquitination (biological process)
GO:0032436 - positive regulation of proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0000151 - ubiquitin ligase complex (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0031624 - ubiquitin conjugating enzyme binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR002867 - IBR domain
IPR031127 - E3 ubiquitin ligase RBR family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2722521.1 hypothetical protein I3760_02G131300 [Carya illinoinensis]3.7e-1553.73Show/hide
Query:  NKEKGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSCLDCE
        NK++ ++ED+MVM+LA+K KWKRCP CK YVE+++GC HI C CG  FCY CG++W  +H   L  +
Subjt:  NKEKGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSCLDCE

KAG5008957.1 hypothetical protein JHK87_017472 [Glycine soja]3.7e-1559.7Show/hide
Query:  ENNKE-KGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSCL
        +N KE + ++EDLMVM+LA+   WKRCP C  YVERI+GC HI C CG+EFCY CG+ WG+ HH+C+
Subjt:  ENNKE-KGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSCL

XP_023527456.1 probable E3 ubiquitin-protein ligase rbrA [Cucurbita pepo subsp. pepo]6.3e-1564.91Show/hide
Query:  KEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSC
        +E++M MKLA++ KWKRCP+CK  VE+IEGC HI C CGSEFCY+CGA W   HH+C
Subjt:  KEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSC

XP_040873081.1 probable E3 ubiquitin-protein ligase ARI10 [Glycine max]3.7e-1559.7Show/hide
Query:  ENNKE-KGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSCL
        +N KE + ++EDLMVM+LA+   WKRCP C  YVERI+GC HI C CG+EFCY CG+ WG+ HH+C+
Subjt:  ENNKE-KGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSCL

XP_042967748.1 E3 ubiquitin-protein ligase RNF144A [Carya illinoinensis]3.7e-1553.73Show/hide
Query:  NKEKGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSCLDCE
        NK++ ++ED+MVM+LA+K KWKRCP CK YVE+++GC HI C CG  FCY CG++W  +H   L  +
Subjt:  NKEKGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSCLDCE

TrEMBL top hitse value%identityAlignment
A0A0A0KUV8 IBR domain-containing protein3.0e-1565.57Show/hide
Query:  EKGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSC
        E+  KE   +MKLAE+MKWKRCP+CKN VERI GC HI C+CGS FCYTCG  W   HH C
Subjt:  EKGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSC

A0A368UHX4 Uncharacterized protein1.8e-1559.7Show/hide
Query:  ENNKE-KGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSCL
        +N KE + ++EDLMVM+LA+   WKRCP C  YVERI+GC HI C CG+EFCY CG+ WG+ HH+C+
Subjt:  ENNKE-KGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSCL

A0A4S4F011 Uncharacterized protein1.2e-1458.06Show/hide
Query:  KEKGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSC
        K+KGK +D +V +LA+K  W++CPNCK YVE+ EGC HI C CG EFCY CG+ WG  H  C
Subjt:  KEKGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSC

A0A6J1GX07 probable E3 ubiquitin-protein ligase ARI101.5e-1464.91Show/hide
Query:  KEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSC
        +E+ M MKLA++ KWKRCP+CK  VE+IEGC HI C CGSEFCY CGA W   HH+C
Subjt:  KEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSC

A0A7J7GTC2 Uncharacterized protein1.2e-1458.06Show/hide
Query:  KEKGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSC
        K+KGK +D +V +LA+K  W++CPNCK YVE+ EGC HI C CG EFCY CG+ WG  H  C
Subjt:  KEKGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSC

SwissProt top hitse value%identityAlignment
F4KGU4 ATP-dependent RNA helicase DEAH12, chloroplastic3.6e-0538.89Show/hide
Query:  ENNKEKGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTC
        E  K+  +  DL +   A+    K CP CK+ +E+ +GC H+KC CG   C+TC
Subjt:  ENNKEKGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTC

P0CE10 ATP-dependent RNA helicase DEAH11, chloroplastic1.0e-0437.04Show/hide
Query:  ENNKEKGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTC
        E  K+  +  DL +   A+    K CP CK+ +E+ +GC H++C CG   C+TC
Subjt:  ENNKEKGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTC

Q04638 Translation termination inhibitor protein ITT11.4e-0447.06Show/hide
Query:  KKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKC-LCGSEFCYTCGAM
        K  DL + K  E    +RCP CK  VER EGC  +KC +CG+ FC+ CG +
Subjt:  KKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKC-LCGSEFCYTCGAM

Q9LVW9 Putative E3 ubiquitin-protein ligase ARI46.1e-0535Show/hide
Query:  AEKMKW-----KRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALH-------HSC
        +E + W     K CP C   +++ +GC H+ C CG  FC+ CG   G  H       HSC
Subjt:  AEKMKW-----KRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALH-------HSC

Q9US46 E3 ubiquitin-protein ligase itt12.9e-0753.49Show/hide
Query:  EKMKW-----KRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGA
        E  KW     +RCP C   VERI+GC H+ CLCG+ FC+ CGA
Subjt:  EKMKW-----KRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGA

Arabidopsis top hitse value%identityAlignment
AT2G21420.1 IBR domain containing protein3.7e-1349.21Show/hide
Query:  DLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMW---GALHHSCLDCED
        D+ +  LA K KW++C  C N VE  EGC HI C CG EFCY CG  W   G L   C D +D
Subjt:  DLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMW---GALHHSCLDCED

AT3G14250.1 RING/U-box superfamily protein1.4e-1548.39Show/hide
Query:  NNKEKGKKE-DLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALH
        N K+K   E D +++++A+  +W+RCP+CK YV+++EGC+HIKC CG +FCY CG++W + H
Subjt:  NNKEKGKKE-DLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALH

AT3G45580.1 RING/U-box protein with C6HC-type zinc finger4.1e-1251.02Show/hide
Query:  EDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMW
        +D+ +  LA +  W++C NCKN +E  EGC HI C CG +FCY CGA W
Subjt:  EDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMW

AT3G53690.1 RING/U-box superfamily protein3.7e-1343.08Show/hide
Query:  EKGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSCLDCE
        E+G ++D+++  +A++ KWKRCP+CK Y+E+ +GC ++KC CG  FCY CG       H C +C+
Subjt:  EKGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSCLDCE

AT5G37560.1 RING/U-box superfamily protein1.8e-1250Show/hide
Query:  DLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHH-SC
        D+M+  LA    W++C  CK+ +E  EGC HI C CG EFCY CG  W   HH SC
Subjt:  DLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHH-SC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAATAATAAAGAGAAAGGAAAGAAAGAAGATTTGATGGTGATGAAGCTGGCGGAGAAGATGAAATGGAAGAGATGTCCAAATTGCAAGAATTATGTGGAGAGAAT
TGAAGGTTGCCGTCATATAAAGTGCCTTTGTGGATCTGAATTTTGCTATACTTGTGGAGCTATGTGGGGTGCCCTCCATCATTCATGCCTAGATTGTGAGGATGCTTTAA
TTTTATCATTTACAATTCTCTACTTTCCTTTGTGGTTTAGGCTAACTAGAATTGAGGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAATAATAAAGAGAAAGGAAAGAAAGAAGATTTGATGGTGATGAAGCTGGCGGAGAAGATGAAATGGAAGAGATGTCCAAATTGCAAGAATTATGTGGAGAGAAT
TGAAGGTTGCCGTCATATAAAGTGCCTTTGTGGATCTGAATTTTGCTATACTTGTGGAGCTATGTGGGGTGCCCTCCATCATTCATGCCTAGATTGTGAGGATGCTTTAA
TTTTATCATTTACAATTCTCTACTTTCCTTTGTGGTTTAGGCTAACTAGAATTGAGGAATAA
Protein sequenceShow/hide protein sequence
MENNKEKGKKEDLMVMKLAEKMKWKRCPNCKNYVERIEGCRHIKCLCGSEFCYTCGAMWGALHHSCLDCEDALILSFTILYFPLWFRLTRIEE