; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10003442 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003442
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionF-box domain-containing protein
Genome locationChr08:1387791..1388087
RNA-Seq ExpressionHG10003442
SyntenyHG10003442
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649006.1 hypothetical protein Csa_008454 [Cucumis sativus]4.9e-1857.95Show/hide
Query:  NRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSF-YSYEYDVSKSPR-SLDKKRSFECFVLRALSEHGGEYIEKV
        +RIS LPDCLLH+I SFLNTK VVQTCVLSKRWKTLWT IPTLNF +  SY + + K+    + K+ SF+ F++R LS+   + I K+
Subjt:  NRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSF-YSYEYDVSKSPR-SLDKKRSFECFVLRALSEHGGEYIEKV

XP_004141639.1 F-box/LRR-repeat protein At3g26922 [Cucumis sativus]4.9e-1857.95Show/hide
Query:  NRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSF-YSYEYDVSKSPR-SLDKKRSFECFVLRALSEHGGEYIEKV
        +RIS LPDCLLH+I SFLNTK VVQTCVLSKRWKTLWT IPTLNF +  SY + + K+    + K+ SF+ F++R LS+   + I K+
Subjt:  NRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSF-YSYEYDVSKSPR-SLDKKRSFECFVLRALSEHGGEYIEKV

XP_022141765.1 LOW QUALITY PROTEIN: putative FBD-associated F-box protein At5g56820, partial [Momordica charantia]6.8e-2060.87Show/hide
Query:  MYSISENNNDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEY--DVSKSPRSLDKKRSFECFVLRALSEHG
        M S  +    ++RIS LPD LLH I S LNT+QVVQTCVLSKRWKTLWT IPTLNF F SY +   +  S  S  K+ SFE F+LR LSEHG
Subjt:  MYSISENNNDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEY--DVSKSPRSLDKKRSFECFVLRALSEHG

XP_038890213.1 uncharacterized protein LOC120079853 [Benincasa hispida]7.6e-1956.04Show/hide
Query:  NDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDV-SKSPRSLDKKRSFECFVLRALSEHGGEYIEKVT
        N  ++ISH+PDC+LH+I S LNTK VVQTCVLSKRWK LWTHIPTLNF +  Y   + SK+     K+R F+ F++R LS+H    I+K+T
Subjt:  NDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDV-SKSPRSLDKKRSFECFVLRALSEHGGEYIEKVT

XP_038890214.1 F-box/LRR-repeat protein At3g26922-like [Benincasa hispida]3.8e-1859.55Show/hide
Query:  NRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLD--KKRSFECFVLRALSEHGGEYIEKVT
        +RIS LPD LLH I S LNTK VVQTCVLSKRWKTLWTHIPTLNF + SY   +S    + D  K++SF+ F+ R LS+H    I K+T
Subjt:  NRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLD--KKRSFECFVLRALSEHGGEYIEKVT

TrEMBL top hitse value%identityAlignment
A0A0A0KSW6 F-box domain-containing protein2.4e-1857.95Show/hide
Query:  NRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSF-YSYEYDVSKSPR-SLDKKRSFECFVLRALSEHGGEYIEKV
        +RIS LPDCLLH+I SFLNTK VVQTCVLSKRWKTLWT IPTLNF +  SY + + K+    + K+ SF+ F++R LS+   + I K+
Subjt:  NRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSF-YSYEYDVSKSPR-SLDKKRSFECFVLRALSEHGGEYIEKV

A0A6J1CJ18 LOW QUALITY PROTEIN: putative FBD-associated F-box protein At5g568203.3e-2060.87Show/hide
Query:  MYSISENNNDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEY--DVSKSPRSLDKKRSFECFVLRALSEHG
        M S  +    ++RIS LPD LLH I S LNT+QVVQTCVLSKRWKTLWT IPTLNF F SY +   +  S  S  K+ SFE F+LR LSEHG
Subjt:  MYSISENNNDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEY--DVSKSPRSLDKKRSFECFVLRALSEHG

A0A6J1CJ42 F-box/FBD/LRR-repeat protein At1g16930-like3.1e-1855.06Show/hide
Query:  DVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEKVT
        DV+RIS LPD LLH I S LNTK  VQTCVLSKRW+++W  IPTLNF F SY ++ S       K++SF+ F+ + +SEH G YI+K++
Subjt:  DVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEKVT

A0A6J1CJT8 F-box/FBD/LRR-repeat protein At2g04230-like1.3e-1657.47Show/hide
Query:  NRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEKVT
        +RIS LPDCLL  I S +N KQVVQTCVLSKRWKTLWTHIP LNF     +        S  K   F+ FV+R LSEH GE+I+K++
Subjt:  NRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEKVT

A0A6J1CKA9 LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like4.0e-1854.17Show/hide
Query:  SISENNNDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEKVT
        S+S+     +RIS LPDCLL  I S +NTKQVVQTCVLSKRWKTLWT IPTLNF+F SY ++         K+ SF+ F+ R LSE     I+K++
Subjt:  SISENNNDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEKVT

SwissProt top hitse value%identityAlignment
O23257 Putative F-box/LRR-repeat protein At4g139606.2e-0834.09Show/hide
Query:  VNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEKVT
        ++ +S LPD +L+ I SFL TK+   T +LSKRW+ L+T +P L+     + +         + ++SF  FV R L+  G   I+K++
Subjt:  VNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEKVT

Q1PFK0 F-box/LRR-repeat protein At1g556603.7e-0835.56Show/hide
Query:  NDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEKVT
        N +++IS LPD LL  + SFL+TK  V T +LS RWK+LW  +P L ++F  Y         S+ + +    F+  +L  H    IE ++
Subjt:  NDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEKVT

Q9FWZ1 F-box/LRR-repeat protein 138.2e-0849.02Show/hide
Query:  SENNNDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLN
        ++ +++V+ IS LPDCLL ++   L TK VV+T VLS+RW+ LW H+P L+
Subjt:  SENNNDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLN

Q9FZ52 F-box/FBD/LRR-repeat protein At1g169305.6e-0937.23Show/hide
Query:  SISENNNDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEK
        S+ E   + +RIS+LPD LL  I S L+TK+ V T VLSKRW+ LW H+P L+    ++  D             F  FV R L     +++E+
Subjt:  SISENNNDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEK

Q9LES9 Putative F-box/FBD/LRR-repeat protein At3g567808.2e-0839.29Show/hide
Query:  ISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEKV
        I+ LPD L+  I SF++TK VV T +LSK+WK+LWT +P L       +YDV    R       FE F+ ++L  H    +E +
Subjt:  ISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEKV

Arabidopsis top hitse value%identityAlignment
AT1G16930.1 F-box/RNI-like/FBD-like domains-containing protein4.0e-1037.23Show/hide
Query:  SISENNNDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEK
        S+ E   + +RIS+LPD LL  I S L+TK+ V T VLSKRW+ LW H+P L+    ++  D             F  FV R L     +++E+
Subjt:  SISENNNDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEK

AT1G55660.1 FBD, F-box and Leucine Rich Repeat domains containing protein2.6e-0935.56Show/hide
Query:  NDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEKVT
        N +++IS LPD LL  + SFL+TK  V T +LS RWK+LW  +P L ++F  Y         S+ + +    F+  +L  H    IE ++
Subjt:  NDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEKVT

AT1G55660.2 FBD, F-box and Leucine Rich Repeat domains containing protein2.6e-0935.56Show/hide
Query:  NDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEKVT
        N +++IS LPD LL  + SFL+TK  V T +LS RWK+LW  +P L ++F  Y         S+ + +    F+  +L  H    IE ++
Subjt:  NDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEKVT

AT1G69630.1 F-box/RNI-like superfamily protein5.8e-0949.02Show/hide
Query:  SENNNDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLN
        ++ +++V+ IS LPDCLL ++   L TK VV+T VLS+RW+ LW H+P L+
Subjt:  SENNNDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLN

AT4G13960.1 F-box/RNI-like superfamily protein4.4e-0934.09Show/hide
Query:  VNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEKVT
        ++ +S LPD +L+ I SFL TK+   T +LSKRW+ L+T +P L+     + +         + ++SF  FV R L+  G   I+K++
Subjt:  VNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEKVT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACTCAATATCAGAAAACAATAATGATGTGAATAGAATCAGCCATTTACCAGATTGTCTTCTTCATGATATTTTCTCCTTCTTAAACACAAAACAAGTTGTTCAAAC
TTGTGTTCTATCAAAGCGTTGGAAAACCCTTTGGACTCATATTCCCACACTCAACTTTAGTTTCTACTCCTATGAATACGATGTGTCGAAATCGCCACGCTCTTTGGATA
AAAAAAGGTCATTTGAGTGTTTCGTGTTGAGAGCTTTATCAGAACATGGTGGTGAATATATTGAAAAAGTGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTACTCAATATCAGAAAACAATAATGATGTGAATAGAATCAGCCATTTACCAGATTGTCTTCTTCATGATATTTTCTCCTTCTTAAACACAAAACAAGTTGTTCAAAC
TTGTGTTCTATCAAAGCGTTGGAAAACCCTTTGGACTCATATTCCCACACTCAACTTTAGTTTCTACTCCTATGAATACGATGTGTCGAAATCGCCACGCTCTTTGGATA
AAAAAAGGTCATTTGAGTGTTTCGTGTTGAGAGCTTTATCAGAACATGGTGGTGAATATATTGAAAAAGTGACTTAG
Protein sequenceShow/hide protein sequence
MYSISENNNDVNRISHLPDCLLHDIFSFLNTKQVVQTCVLSKRWKTLWTHIPTLNFSFYSYEYDVSKSPRSLDKKRSFECFVLRALSEHGGEYIEKVT