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HG10003446 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003446
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionMediator of RNA polymerase II transcription subunit 17
Genome locationChr08:1438231..1438666
RNA-Seq ExpressionHG10003446
SyntenyHG10003446
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0070847 - core mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR019313 - Mediator complex, subunit Med17


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039269.1 mediator of RNA polymerase II transcription subunit 17 [Cucumis melo var. makuwa]1.2e-4492.16Show/hide
Query:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL
        MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIY  N+Y CDLADL V ILLQVASQ ILWLHEEALTWGIKANRDFLSLSFELEQGET RL
Subjt:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL

Query:  VA
        VA
Subjt:  VA
XP_008459609.1 PREDICTED: mediator of RNA polymerase II transcription subunit 17 [Cucumis melo]1.2e-4492.16Show/hide
Query:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL
        MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIY  N+Y CDLADL V ILLQVASQ ILWLHEEALTWGIKANRDFLSLSFELEQGET RL
Subjt:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL

Query:  VA
        VA
Subjt:  VA
XP_011656092.1 mediator of RNA polymerase II transcription subunit 17 [Cucumis sativus]1.2e-4492.16Show/hide
Query:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL
        MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYS N+Y CDLADL V ILLQVASQ ILWLHEEAL WGIKANRDFLSLSFELEQGET RL
Subjt:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL

Query:  VA
        VA
Subjt:  VA
XP_023005226.1 mediator of RNA polymerase II transcription subunit 17-like [Cucurbita maxima]1.5e-4288.24Show/hide
Query:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL
        MNNVTK+QF TKVVVND+CITIEGEGAPNVV LF  NSKDIYSMN+YGCDLADL V ILLQVASQ +LWLHEEALTWGIKANRDFLSLSFELEQGET RL
Subjt:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL

Query:  VA
        VA
Subjt:  VA
XP_038889914.1 mediator of RNA polymerase II transcription subunit 17 [Benincasa hispida]7.3e-4591.18Show/hide
Query:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL
        MNN+TK+QFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDI+SMN+YGCDLADL V ILLQVASQ ILWLHEEALTWGIKANRDFLSLSFELEQGE  RL
Subjt:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL

Query:  VA
        VA
Subjt:  VA
TrEMBL top hitse value%identityAlignment
A0A0A0KXX2 Mediator of RNA polymerase II transcription subunit 176.0e-4592.16Show/hide
Query:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL
        MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYS N+Y CDLADL V ILLQVASQ ILWLHEEAL WGIKANRDFLSLSFELEQGET RL
Subjt:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL

Query:  VA
        VA
Subjt:  VA
A0A1S4E2I2 Mediator of RNA polymerase II transcription subunit 176.0e-4592.16Show/hide
Query:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL
        MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIY  N+Y CDLADL V ILLQVASQ ILWLHEEALTWGIKANRDFLSLSFELEQGET RL
Subjt:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL

Query:  VA
        VA
Subjt:  VA
A0A5A7TDC1 Mediator of RNA polymerase II transcription subunit 176.0e-4592.16Show/hide
Query:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL
        MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIY  N+Y CDLADL V ILLQVASQ ILWLHEEALTWGIKANRDFLSLSFELEQGET RL
Subjt:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL

Query:  VA
        VA
Subjt:  VA
A0A5D3BMZ9 Mediator of RNA polymerase II transcription subunit 176.0e-4592.16Show/hide
Query:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL
        MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIY  N+Y CDLADL V ILLQVASQ ILWLHEEALTWGIKANRDFLSLSFELEQGET RL
Subjt:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL

Query:  VA
        VA
Subjt:  VA
A0A6J1KUD0 mediator of RNA polymerase II transcription subunit 17-like7.3e-4388.24Show/hide
Query:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL
        MNNVTK+QF TKVVVND+CITIEGEGAPNVV LF  NSKDIYSMN+YGCDLADL V ILLQVASQ +LWLHEEALTWGIKANRDFLSLSFELEQGET RL
Subjt:  MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRL

Query:  VA
        VA
Subjt:  VA
SwissProt top hitse value%identityAlignment
F4K460 Mediator of RNA polymerase II transcription subunit 174.6e-2661.86Show/hide
Query:  KTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVA
        KTQF TKVVV DDCI++E E  PNVVGL   +S +++S+NKY CD+ADL V IL QVASQ + WL EEA T G KA+R+FLSLS E+ +GE   LVA
Subjt:  KTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVA
Arabidopsis top hitse value%identityAlignment
AT5G20170.1 RNA polymerase II transcription mediators3.3e-2761.86Show/hide
Query:  KTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVA
        KTQF TKVVV DDCI++E E  PNVVGL   +S +++S+NKY CD+ADL V IL QVASQ + WL EEA T G KA+R+FLSLS E+ +GE   LVA
Subjt:  KTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAATGTAACCAAAACACAATTTCTGACTAAAGTGGTTGTAAATGATGATTGCATTACTATCGAAGGGGAAGGTGCACCTAATGTCGTTGGCTTGTTCAACGGAAA
TTCCAAGGATATCTATTCAATGAACAAATATGGTTGTGACTTGGCTGATCTTCTCGTTACAATTCTGTTGCAGGTTGCGAGCCAAACTATTCTTTGGCTTCATGAGGAAG
CTCTAACCTGGGGAATAAAGGCCAACCGTGACTTCCTAAGTCTGTCATTTGAGCTAGAACAAGGTGAAACATTCCGGCTGGTAGCCATGTGGACCCAGAAGATCCTCAAG
GATGCCTTTCCTGGTGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATAATGTAACCAAAACACAATTTCTGACTAAAGTGGTTGTAAATGATGATTGCATTACTATCGAAGGGGAAGGTGCACCTAATGTCGTTGGCTTGTTCAACGGAAA
TTCCAAGGATATCTATTCAATGAACAAATATGGTTGTGACTTGGCTGATCTTCTCGTTACAATTCTGTTGCAGGTTGCGAGCCAAACTATTCTTTGGCTTCATGAGGAAG
CTCTAACCTGGGGAATAAAGGCCAACCGTGACTTCCTAAGTCTGTCATTTGAGCTAGAACAAGGTGAAACATTCCGGCTGGTAGCCATGTGGACCCAGAAGATCCTCAAG
GATGCCTTTCCTGGTGGTTAG
Protein sequenceShow/hide protein sequence
MNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILK
DAFPGG