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HG10003463 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003463
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionsuccinate dehydrogenase assembly factor 1, mitochondrial
Genome locationChr08:1780171..1780434
RNA-Seq ExpressionHG10003463
SyntenyHG10003463
Gene Ontology termsGO:0034553 - mitochondrial respiratory chain complex II assembly (biological process)
GO:0005739 - mitochondrion (cellular component)
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008459591.1 PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis melo]2.2e-3086.21Show/hide
Query:  MAKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNSEP
        MAKLSGLQKQVLSLYR+FLRAAR+KS EDR+Q+ESIVAAEFRRNA QIDRKNFI+IEYL+RRGNKQLDQLKSPATVRLS+L+ N EP
Subjt:  MAKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNSEP

XP_011656085.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis sativus]6.5e-3085.06Show/hide
Query:  MAKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNSEP
        MAKLSGLQKQVLSLYR+FLRAAR+KS EDR+Q+ESIVA EFRRNA QIDRKNFI+IEYL+RRGNKQLDQLKSPATVRLS+L+ N EP
Subjt:  MAKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNSEP

XP_022141880.1 succinate dehydrogenase assembly factor 1, mitochondrial [Momordica charantia]4.2e-2986.75Show/hide
Query:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNS
        KLSGLQKQVLSLYR FLRAARSKSAEDRRQ+ES+VAAEFRRNA+QID KNFI+IEYL+RRGNKQLDQLKSPATVRLSS+N+++
Subjt:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNS

XP_023525064.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita pepo subsp. pepo]4.2e-2984.71Show/hide
Query:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNSEP
        KLSG+Q+QVLSLYR+FLRAARSKSAEDRRQIES+V+AEFRRNA  IDRKNFI+IEYL+RRGNKQLDQL+SPATV LSSL LNS P
Subjt:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNSEP

XP_038890134.1 succinate dehydrogenase assembly factor 1, mitochondrial [Benincasa hispida]4.1e-3289.66Show/hide
Query:  MAKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNSEP
        MAKLSGLQKQVLSLYR+FLRAARSKSAEDRRQIESIVAAEFRRNA QIDRKNFIHIEYL+RRGNKQLDQLKSP TVR S++N +SEP
Subjt:  MAKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNSEP

TrEMBL top hitse value%identityAlignment
A0A0A0KST3 Uncharacterized protein3.1e-3085.06Show/hide
Query:  MAKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNSEP
        MAKLSGLQKQVLSLYR+FLRAAR+KS EDR+Q+ESIVA EFRRNA QIDRKNFI+IEYL+RRGNKQLDQLKSPATVRLS+L+ N EP
Subjt:  MAKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNSEP

A0A1S3CAJ2 succinate dehydrogenase assembly factor 1, mitochondrial1.1e-3086.21Show/hide
Query:  MAKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNSEP
        MAKLSGLQKQVLSLYR+FLRAAR+KS EDR+Q+ESIVAAEFRRNA QIDRKNFI+IEYL+RRGNKQLDQLKSPATVRLS+L+ N EP
Subjt:  MAKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNSEP

A0A6J1CJC1 succinate dehydrogenase assembly factor 1, mitochondrial2.0e-2986.75Show/hide
Query:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNS
        KLSGLQKQVLSLYR FLRAARSKSAEDRRQ+ES+VAAEFRRNA+QID KNFI+IEYL+RRGNKQLDQLKSPATVRLSS+N+++
Subjt:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNS

A0A6J1EX50 LOW QUALITY PROTEIN: succinate dehydrogenase assembly factor 1, mitochondrial2.5e-2780Show/hide
Query:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNSEP
        KLSG+QKQVLSLY +FLRAARSKSAEDR++IES+V+AEFRRNA  IDRK+FI+IEYL+RRGNKQLDQL+SPATV LS+L LNS P
Subjt:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNSEP

A0A6J1I7F5 succinate dehydrogenase assembly factor 1, mitochondrial9.4e-2780Show/hide
Query:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNSEP
        KLSG+Q QVLSLYR+FLRAARSKSAEDR+ IES+V+AEFRRNA  ID KNFI+IEYL+RRG+KQLDQL+SPATV LSSL LNS P
Subjt:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNSEP

SwissProt top hitse value%identityAlignment
A6NFY7 Succinate dehydrogenase assembly factor 1, mitochondrial1.0e-0648.61Show/hide
Query:  MAKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKS
        M++ S LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL RRG +QL  L+S
Subjt:  MAKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKS

A8PU71 Succinate dehydrogenase assembly factor 1, mitochondrial1.4e-0648.61Show/hide
Query:  MAKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKS
        M++ S LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL RRG +QL  L+S
Subjt:  MAKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKS

B0K036 Succinate dehydrogenase assembly factor 1, mitochondrial1.2e-0750Show/hide
Query:  MAKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKS
        M++LS LQ+QVLSLYR  LRA R K   + R     V AEFR++A+ + R + + IEYL RRG +QL  L+S
Subjt:  MAKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKS

Q3U276 Succinate dehydrogenase assembly factor 1, mitochondrial5.2e-0647.22Show/hide
Query:  MAKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKS
        M++ S LQ+QVLSLYR  LRA R     + R     V AEFR++A+ + R + + IEYL RRG +QL  L+S
Subjt:  MAKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKS

Q54HG5 Succinate dehydrogenase assembly factor 1A, mitochondrial3.0e-0641.43Show/hide
Query:  SGLQKQVLSLYRSFLRAARSKSAED-RRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSP
        SGLQK VLSLYRSFLR +  K  ++    I + +  +FR  A  I +++   IE L+ +G +QL+Q++ P
Subjt:  SGLQKQVLSLYRSFLRAARSKSAED-RRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSP

Arabidopsis top hitse value%identityAlignment
AT2G39725.1 LYR family of Fe/S cluster biogenesis protein1.5e-2468.29Show/hide
Query:  AKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNL
        +KLSG+QKQVLSLYR FLRAARS+  EDR++IE IV+ EFR N+ ++DRKNF +IEYL+R G KQLDQLKSPA V LSS+ +
Subjt:  AKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNL

AT2G39725.2 LYR family of Fe/S cluster biogenesis protein1.5e-2468.29Show/hide
Query:  AKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNL
        +KLSG+QKQVLSLYR FLRAARS+  EDR++IE IV+ EFR N+ ++DRKNF +IEYL+R G KQLDQLKSPA V LSS+ +
Subjt:  AKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTATACAGATCATTTCTCCGAGCAGCTCGTTCCAAATCTGCTGAAGATCGACGCCAAATCGAATCGATTGT
CGCCGCCGAGTTCCGCCGAAACGCCAACCAAATCGATCGTAAAAATTTCATCCACATCGAGTACCTTATTCGTCGTGGTAACAAACAGTTGGATCAACTTAAAAGCCCTG
CCACTGTTCGATTGTCTTCGCTCAATCTCAATTCCGAGCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTATACAGATCATTTCTCCGAGCAGCTCGTTCCAAATCTGCTGAAGATCGACGCCAAATCGAATCGATTGT
CGCCGCCGAGTTCCGCCGAAACGCCAACCAAATCGATCGTAAAAATTTCATCCACATCGAGTACCTTATTCGTCGTGGTAACAAACAGTTGGATCAACTTAAAAGCCCTG
CCACTGTTCGATTGTCTTCGCTCAATCTCAATTCCGAGCCTTGA
Protein sequenceShow/hide protein sequence
MAKLSGLQKQVLSLYRSFLRAARSKSAEDRRQIESIVAAEFRRNANQIDRKNFIHIEYLIRRGNKQLDQLKSPATVRLSSLNLNSEP