; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10003468 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003468
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr08:1836949..1839350
RNA-Seq ExpressionHG10003468
SyntenyHG10003468
Gene Ontology termsGO:0010467 - gene expression (biological process)
GO:0016070 - RNA metabolic process (biological process)
GO:0042254 - ribosome biogenesis (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0098796 - membrane protein complex (cellular component)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037030.1 hypothetical protein E6C27_scaffold86G001220 [Cucumis melo var. makuwa]1.8e-0950.75Show/hide
Query:  NGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGLRRHLTEAEIMEWSILS
        NG+S SFWND WV     K AFP+ +AL   K  +IA CWN +  +W+LGLR +L + E+ EWSI S
Subjt:  NGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGLRRHLTEAEIMEWSILS

KAA0054164.1 putative phosphoinositide phosphatase SAC9 [Cucumis melo var. makuwa]2.0e-0847.76Show/hide
Query:  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGLRRHLTEAEIMEWS
        K SNG  I FW+D WV SS LK+ FP LY +    + ++AD W+  + SW+L LRR L E EI ++S
Subjt:  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGLRRHLTEAEIMEWS

KAE8684356.1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Hibiscus syriacus]2.0e-0845.07Show/hide
Query:  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCW--NSENASWNLGLRRHLTEAEIMEWSIL
        KT NGDSI FW+D+W+D   L+  FPRL+AL+ +K   I D    NS +  W++ +RR+L + E+M+W+ L
Subjt:  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCW--NSENASWNLGLRRHLTEAEIMEWSIL

KAE8725177.1 hypothetical protein F3Y22_tig00009009pilonHSYRG00196 [Hibiscus syriacus]1.6e-0845.59Show/hide
Query:  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIAD--CWNSENASWNLGLRRHLTEAEIMEW
        +  NG SI FWND W ++S LKE FPR+YAL+ +K   + D  C+++   SWN+ LRR+L + E+ +W
Subjt:  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIAD--CWNSENASWNLGLRRHLTEAEIMEW

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-0846.38Show/hide
Query:  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGLRRHLTEAEIMEWSIL
        K  NG S SFW+  W  +SPL   +PRLYAL+ +K S+I D WN+    W+L  RR L E E+  W+ L
Subjt:  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGLRRHLTEAEIMEWSIL

TrEMBL top hitse value%identityAlignment
A0A5A7UG67 Putative phosphoinositide phosphatase SAC99.8e-0947.76Show/hide
Query:  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGLRRHLTEAEIMEWS
        K SNG  I FW+D WV SS LK+ FP LY +    + ++AD W+  + SW+L LRR L E EI ++S
Subjt:  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGLRRHLTEAEIMEWS

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein7.5e-0946.38Show/hide
Query:  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGLRRHLTEAEIMEWSIL
        K  NG S SFW+  W  +SPL   +PRLYAL+ +K S+I D WN+    W+L  RR L E E+  W+ L
Subjt:  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGLRRHLTEAEIMEWSIL

A0A5D3C5L4 Uncharacterized protein8.9e-1050.75Show/hide
Query:  NGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGLRRHLTEAEIMEWSILS
        NG+S SFWND WV     K AFP+ +AL   K  +IA CWN +  +W+LGLR +L + E+ EWSI S
Subjt:  NGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGLRRHLTEAEIMEWSILS

A0A6A2YY54 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 19.8e-0945.07Show/hide
Query:  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCW--NSENASWNLGLRRHLTEAEIMEWSIL
        KT NGDSI FW+D+W+D   L+  FPRL+AL+ +K   I D    NS +  W++ +RR+L + E+M+W+ L
Subjt:  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCW--NSENASWNLGLRRHLTEAEIMEWSIL

A0A6A3C9D3 Uncharacterized protein7.5e-0945.59Show/hide
Query:  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIAD--CWNSENASWNLGLRRHLTEAEIMEW
        +  NG SI FWND W ++S LKE FPR+YAL+ +K   + D  C+++   SWN+ LRR+L + E+ +W
Subjt:  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIAD--CWNSENASWNLGLRRHLTEAEIMEW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAATTTCACGGAGATGGGGAATGAAATGAGGAGCTGGGACGGGGATGGGGAAGCCATCCTCGCCCTCGCTCCCCACCCTATGGACATCTCTACTCCTGGCCCAAA
TTTTTCAGACCCACAAAAGCTTCCTTCACCTAAGACATCATGGAATCAATCGTATAAAAAGACTAGCAATGGAGATTCCATTTCCTTTTGGAACGATAGTTGGGTTGATT
CATCTCCTCTCAAGGAAGCCTTCCCCAGACTTTATGCTCTCACAAATAGTAAGAATTCAACCATTGCCGATTGTTGGAATAGTGAGAATGCTTCTTGGAATCTTGGCTTG
AGAAGACACCTCACCGAAGCCGAGATCATGGAGTGGTCCATTCTATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAATTTCACGGAGATGGGGAATGAAATGAGGAGCTGGGACGGGGATGGGGAAGCCATCCTCGCCCTCGCTCCCCACCCTATGGACATCTCTACTCCTGGCCCAAA
TTTTTCAGACCCACAAAAGCTTCCTTCACCTAAGACATCATGGAATCAATCGTATAAAAAGACTAGCAATGGAGATTCCATTTCCTTTTGGAACGATAGTTGGGTTGATT
CATCTCCTCTCAAGGAAGCCTTCCCCAGACTTTATGCTCTCACAAATAGTAAGAATTCAACCATTGCCGATTGTTGGAATAGTGAGAATGCTTCTTGGAATCTTGGCTTG
AGAAGACACCTCACCGAAGCCGAGATCATGGAGTGGTCCATTCTATCTTGA
Protein sequenceShow/hide protein sequence
MKNFTEMGNEMRSWDGDGEAILALAPHPMDISTPGPNFSDPQKLPSPKTSWNQSYKKTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGL
RRHLTEAEIMEWSILS