CuGenDBv2

Gene ID	HG10003488
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Complex 1 LYR protein
Genome location	Chr08:2182905..2184011
RNA-Seq Expression	HG10003488
Synteny	HG10003488
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039302.1 Complex1_LYR domain-containing protein [Cucumis melo var. makuwa]

4.7e-43

93.07

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Query:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLP
        MNSEA QVAK YRQLLKAVK HIGK ESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIA+DRS+EMKRILGKSAASVGL LP
Subjt:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLP

Query:  E
        E
Subjt:  E

KAG7033478.1 Extradiol ring-cleavage dioxygenase, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.6e-43

91.26

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Query:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLP
        MNSEA QVAKVYRQLLKAVKNHIGK E+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLARDYTFLLNSDLLFSYNIAIDRS+EMKRILGKSAASVGL+LP
Subjt:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLP

Query:  EAY
        E Y
Subjt:  EAY

XP_004144434.1 uncharacterized protein LOC101204721 [Cucumis sativus]

1.6e-43

86.36

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Query:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASV
        MNSEA QVAKVYRQLLKAVK H+GK ESKKHFVDYVAQKFRDKSILSKPHS+QQEIKLARDYTFLLNS     DLLFSYNIA+DRS+EMKR+LGKSAASV
Subjt:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLQLPEAYQP
        GL LPE YQP
Subjt:  GLQLPEAYQP

XP_022967927.1 uncharacterized protein LOC111467294 [Cucurbita maxima]

6.2e-43

87.27

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Query:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASV
        MNSEA QVAKVYRQLLKAVKNHIGK E+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLARDYTFLLNS     DLLFSYNIAIDRS+EMKRILGKSAASV
Subjt:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLQLPEAYQP
        GL+LPE YQP
Subjt:  GLQLPEAYQP

XP_038889144.1 uncharacterized protein LOC120079034 [Benincasa hispida]

9.5e-44

89.09

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Query:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASV
        MNSEA QVAKVYRQLLKAVKNHIGK ESKKHFVDYVAQKFRDK+ILSKPHSVQQEIKLA DYTFLLNS     DLLFSYNIA+DRSEEMKRILGKSAASV
Subjt:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLQLPEAYQP
        GL+LPE YQP
Subjt:  GLQLPEAYQP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9E2 Uncharacterized protein

7.9e-44

86.36

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Query:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASV
        MNSEA QVAKVYRQLLKAVK H+GK ESKKHFVDYVAQKFRDKSILSKPHS+QQEIKLARDYTFLLNS     DLLFSYNIA+DRS+EMKR+LGKSAASV
Subjt:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLQLPEAYQP
        GL LPE YQP
Subjt:  GLQLPEAYQP

A0A5D3BQE5 Complex1_LYR domain-containing protein

2.3e-43

93.07

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Query:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLP
        MNSEA QVAK YRQLLKAVK HIGK ESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIA+DRS+EMKRILGKSAASVGL LP
Subjt:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLP

Query:  E
        E
Subjt:  E

A0A6J1C0V5 uncharacterized protein LOC111006395

9.0e-40

81.82

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Query:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEA QVA+VYR+LLKAVKNHIGK ESKKHFVDYVAQKFR++S LS+PHS+QQ+IKLA DY  LLNS     DLLFSYNIAIDRSEEMKRILGKSAASV
Subjt:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLQLPEAYQP
        GL+LPEAYQP
Subjt:  GLQLPEAYQP

A0A6J1EY92 uncharacterized protein LOC111439884

1.5e-42

86.36

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Query:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASV
        MNSEA QVAKVYRQLLKAVK HIGK E+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLARDYTFLLNS     DLLFSYNIAIDRS+EMKRILGKSAASV
Subjt:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLQLPEAYQP
        GL+LPE YQP
Subjt:  GLQLPEAYQP

A0A6J1HS51 uncharacterized protein LOC111467294

3.0e-43

87.27

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Query:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASV
        MNSEA QVAKVYRQLLKAVKNHIGK E+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLARDYTFLLNS     DLLFSYNIAIDRS+EMKRILGKSAASV
Subjt:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLQLPEAYQP
        GL+LPE YQP
Subjt:  GLQLPEAYQP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G51960.1 CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

3.0e-27

56.36

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Query:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASV
        M+ E    A+VYR LLKAV  H+GK + K HF+D+V Q+FR        ++  ++I LAR+YT+LLNS     DLLFSYNIA+DR+EEMKR+L KSAASV
Subjt:  MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLQLPEAYQP
        GL+LPE Y+P
Subjt:  GLQLPEAYQP

Sequences

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CDS sequence

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ATGAATTCAGAAGCCTTCCAGGTAGCTAAGGTCTACCGCCAGCTTCTCAAAGCTGTAAAGAATCATATTGGAAAAGGAGAGAGCAAGAAGCATTTTGTGGATTATGTGGC
TCAAAAGTTCAGGGATAAATCCATACTTTCAAAACCCCACTCTGTTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTGAACAGCGACTTGCTGTTCTCGT
ACAACATTGCTATTGATAGATCAGAGGAAATGAAGCGAATATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTCAACTACCCGAGGCTTATCAACCCTGA

mRNA sequence

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Protein sequence

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MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP

HG10003488 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome