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HG10003533 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003533
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionGag-pol polyprotein
Genome locationChr08:2919381..2923793
RNA-Seq ExpressionHG10003533
SyntenyHG10003533
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025487.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.3e-0750Show/hide
Query:  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRFENS
        + KE+I+ L+E+N RLMS I  LK +L+E + D D + K V+MLNSGT++LD IL+SG+  S K G+ F+ S
Subjt:  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRFENS

KAA0041441.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.9e-0748.61Show/hide
Query:  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRFENS
        + KE+I+ L+E+N RLM  I  LK +L+E + + D   KS++MLNSGTD+LD IL+SG+  S K G+ F+ S
Subjt:  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRFENS

KAA0060361.1 gag-pol polyprotein, related [Cucumis melo var. makuwa]3.9e-0748.65Show/hide
Query:  CAIADLMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRF
        C   ++ KEKI+ LIE+N R MS I  LK +L+E + + D + KSV+MLNSGT++L  IL SG   S K G+ F
Subjt:  CAIADLMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRF

TYK00378.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.3e-0750Show/hide
Query:  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRFENS
        + KE+I+ L+E+N RLMS I  LK +L+E + D D + K V+MLNSGT++LD IL+SG+  S K G+ F+ S
Subjt:  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRFENS

TYK01584.1 putative envelope-like protein [Cucumis melo var. makuwa]5.1e-0751.39Show/hide
Query:  IADLMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRF
        + +  +EKI  L ++N RLM  I ELK EL+ AK + D+L+KSVRML+ GT  LD+ILS  K  +DKKGI +
Subjt:  IADLMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRF

TrEMBL top hitse value%identityAlignment
A0A5A7SLA0 Gag-pol polyprotein6.5e-0850Show/hide
Query:  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRFENS
        + KE+I+ L+E+N RLMS I  LK +L+E + D D + K V+MLNSGT++LD IL+SG+  S K G+ F+ S
Subjt:  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRFENS

A0A5A7TIF9 Gag-pol polyprotein1.9e-0748.61Show/hide
Query:  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRFENS
        + KE+I+ L+E+N RLM  I  LK +L+E + + D   KS++MLNSGTD+LD IL+SG+  S K G+ F+ S
Subjt:  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRFENS

A0A5A7V3Q5 Gag-pol polyprotein, related1.9e-0748.65Show/hide
Query:  CAIADLMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRF
        C   ++ KEKI+ LIE+N R MS I  LK +L+E + + D + KSV+MLNSGT++L  IL SG   S K G+ F
Subjt:  CAIADLMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRF

A0A5D3BMP7 Gag-pol polyprotein6.5e-0850Show/hide
Query:  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRFENS
        + KE+I+ L+E+N RLMS I  LK +L+E + D D + K V+MLNSGT++LD IL+SG+  S K G+ F+ S
Subjt:  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRFENS

A0A5D3C964 Putative mitochondrial protein2.5e-0748.61Show/hide
Query:  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRFENS
        + KE+I+ L+++N RLMS I  LK +L+E + D D   KSV+MLNSGT++LD IL SG+  S + G+ F+ S
Subjt:  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRFENS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCGCGATTGCTTATGTCATGGTGTGCGATTGTTGACCTCATGGTGCGCGATCGCTGACCTCATGAAAGAGAAGATTGAGAAACTTATTGAAGACAATTATCGCTT
GATGAGTACCATTTTAGAGCTGAAGAAAGAATTGCAAGAGGCTAAAGTTGATCTTGACAGTTTATCCAAATCTGTTCGAATGCTGAACTCTGGAACAGATGATCTTGATA
AGATTCTGTCATCAGGAAAGAAAATGTCTGATAAGAAAGGAATCCGTTTTGAAAATTCGGGAAAACAGTGGCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGCGCGATTGCTTATGTCATGGTGTGCGATTGTTGACCTCATGGTGCGCGATCGCTGACCTCATGAAAGAGAAGATTGAGAAACTTATTGAAGACAATTATCGCTT
GATGAGTACCATTTTAGAGCTGAAGAAAGAATTGCAAGAGGCTAAAGTTGATCTTGACAGTTTATCCAAATCTGTTCGAATGCTGAACTCTGGAACAGATGATCTTGATA
AGATTCTGTCATCAGGAAAGAAAATGTCTGATAAGAAAGGAATCCGTTTTGAAAATTCGGGAAAACAGTGGCACTAA
Protein sequenceShow/hide protein sequence
MVRDCLCHGVRLLTSWCAIADLMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRFENSGKQWH