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HG10003535 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003535
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationChr08:2942734..2943159
RNA-Seq ExpressionHG10003535
SyntenyHG10003535
Gene Ontology termsGO:0010073 - meristem maintenance (biological process)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR004332 - Transposase, MuDR, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034014.1 uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa]1.8e-4564.03Show/hide
Query:  MDPNPESVA-PACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS
        +D  PES A P C +E M+A N+Y +FRTETDDEFE +DFDG EYE+PS+TF++LD+  +D+I+EHDPI+ P+V DNT+LY GMIC++KEM+QH VKCF+
Subjt:  MDPNPESVA-PACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS

Query:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS
         K HAPYEVVEST   W I+CKK  EGCKWRLRA  +KS
Subjt:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS

KAA0036768.1 uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa]6.8e-4564.03Show/hide
Query:  MDPNPESVAP-ACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS
        +D  PES AP  C +E M+A N+Y +FRTETDDEFE +DFDG EYE+PS+TF++LD+  +D I+EHDPI+ P+V DNT+LY GMIC++K+MLQH VKCF+
Subjt:  MDPNPESVAP-ACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS

Query:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS
         K HAPYEVVEST   W I+CKK  EGCKWRLRA  +KS
Subjt:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS

KAA0040476.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]8.8e-4563.31Show/hide
Query:  MDPNPESVA-PACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS
        +D  PES A P C +E M+A N+Y +FRTETDDEFE +DFDG EYE+PS+ F++LD+  +D I+EHDPI+ P+V DNT+LY GMIC++KEMLQH +KCF+
Subjt:  MDPNPESVA-PACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS

Query:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS
         K HAPYEVVEST   W I+CKK  EGCKWRLRA  +KS
Subjt:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS

TYJ95836.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]6.8e-4564.03Show/hide
Query:  MDPNPESVA-PACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS
        +D  PES A P C +E M+A N+Y +FRTETDDEFE +DFDG EYE+PS+TF++LD+  +D I+EHDPI+ P+V DNT+LY GMIC++K+MLQH VKCF+
Subjt:  MDPNPESVA-PACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS

Query:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS
         K HAPYEVVEST   W I+CKK  EGCKWRLRA  +KS
Subjt:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS

XP_008456454.1 PREDICTED: uncharacterized protein LOC103496397 [Cucumis melo]2.3e-4564.03Show/hide
Query:  MDPNPESVA-PACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS
        +D +PES A P C +E M+A N+Y +FRT+TDDEFE +DFDG EYE+PS+TF+NLD+  +D I+EHDPI+ P+V+DNT+LY GMIC++KEMLQH VKCF+
Subjt:  MDPNPESVA-PACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS

Query:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS
         K HAPYEVVEST   W I+CKK  +GCKWRLRA  +KS
Subjt:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS

TrEMBL top hitse value%identityAlignment
A0A1S3C4J7 uncharacterized protein LOC1034963971.1e-4564.03Show/hide
Query:  MDPNPESVA-PACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS
        +D +PES A P C +E M+A N+Y +FRT+TDDEFE +DFDG EYE+PS+TF+NLD+  +D I+EHDPI+ P+V+DNT+LY GMIC++KEMLQH VKCF+
Subjt:  MDPNPESVA-PACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS

Query:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS
         K HAPYEVVEST   W I+CKK  +GCKWRLRA  +KS
Subjt:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS

A0A5A7SS31 DBD_Tnp_Mut domain-containing protein8.6e-4664.03Show/hide
Query:  MDPNPESVA-PACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS
        +D  PES A P C +E M+A N+Y +FRTETDDEFE +DFDG EYE+PS+TF++LD+  +D+I+EHDPI+ P+V DNT+LY GMIC++KEM+QH VKCF+
Subjt:  MDPNPESVA-PACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS

Query:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS
         K HAPYEVVEST   W I+CKK  EGCKWRLRA  +KS
Subjt:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS

A0A5A7T1X8 SWIM-type domain-containing protein3.3e-4564.03Show/hide
Query:  MDPNPESVAP-ACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS
        +D  PES AP  C +E M+A N+Y +FRTETDDEFE +DFDG EYE+PS+TF++LD+  +D I+EHDPI+ P+V DNT+LY GMIC++K+MLQH VKCF+
Subjt:  MDPNPESVAP-ACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS

Query:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS
         K HAPYEVVEST   W I+CKK  EGCKWRLRA  +KS
Subjt:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS

A0A5D3BAB0 Serine/threonine-protein phosphatase 7 long form-like protein3.3e-4564.03Show/hide
Query:  MDPNPESVA-PACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS
        +D  PES A P C +E M+A N+Y +FRTETDDEFE +DFDG EYE+PS+TF++LD+  +D I+EHDPI+ P+V DNT+LY GMIC++K+MLQH VKCF+
Subjt:  MDPNPESVA-PACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS

Query:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS
         K HAPYEVVEST   W I+CKK  EGCKWRLRA  +KS
Subjt:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS

A0A5D3DIM2 Serine/threonine-protein phosphatase 7 long form-like protein4.3e-4563.31Show/hide
Query:  MDPNPESVA-PACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS
        +D  PES A P C +E M+A N+Y +FRTETDDEFE +DFDG EYE+PS+ F++LD+  +D I+EHDPI+ P+V DNT+LY GMIC++KEMLQH +KCF+
Subjt:  MDPNPESVA-PACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFS

Query:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS
         K HAPYEVVEST   W I+CKK  EGCKWRLRA  +KS
Subjt:  TKHHAPYEVVESTLAIWAIQCKKWEEGCKWRLRATKRKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCCTAATCCTGAATCAGTTGCACCAGCCTGTGATGATGAAGGTATGATGGCTAATAATCAATACATGGATTTTAGAACAGAGACTGACGATGAATTTGAGGGTTT
GGACTTTGATGGTCGTGAATATGAATTACCTTCAGATACATTCAGTAATTTAGATATATATGTAATAGATAGCATTAGAGAACATGACCCAATTGTAGCCCCTGTGGTTG
TTGACAATACCCAATTGTATAATGGGATGATTTGTCAAGATAAAGAAATGCTACAACATGCAGTCAAGTGTTTTTCTACCAAGCATCACGCACCATATGAGGTAGTAGAA
TCGACACTGGCTATTTGGGCAATTCAATGTAAGAAGTGGGAAGAAGGTTGCAAATGGAGACTCCGTGCAACAAAAAGGAAATCACGCACCATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACCCTAATCCTGAATCAGTTGCACCAGCCTGTGATGATGAAGGTATGATGGCTAATAATCAATACATGGATTTTAGAACAGAGACTGACGATGAATTTGAGGGTTT
GGACTTTGATGGTCGTGAATATGAATTACCTTCAGATACATTCAGTAATTTAGATATATATGTAATAGATAGCATTAGAGAACATGACCCAATTGTAGCCCCTGTGGTTG
TTGACAATACCCAATTGTATAATGGGATGATTTGTCAAGATAAAGAAATGCTACAACATGCAGTCAAGTGTTTTTCTACCAAGCATCACGCACCATATGAGGTAGTAGAA
TCGACACTGGCTATTTGGGCAATTCAATGTAAGAAGTGGGAAGAAGGTTGCAAATGGAGACTCCGTGCAACAAAAAGGAAATCACGCACCATATGA
Protein sequenceShow/hide protein sequence
MDPNPESVAPACDDEGMMANNQYMDFRTETDDEFEGLDFDGREYELPSDTFSNLDIYVIDSIREHDPIVAPVVVDNTQLYNGMICQDKEMLQHAVKCFSTKHHAPYEVVE
STLAIWAIQCKKWEEGCKWRLRATKRKSRTI