CuGenDBv2

Gene ID	HG10003546
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ATP synthase epsilon chain, chloroplastic
Genome location	Chr08:3035971..3036381
RNA-Seq Expression	HG10003546
Synteny	HG10003546
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0005524 - ATP binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	IPR001469 - ATP synthase, F1 complex, delta/epsilon subunit IPR020546 - ATP synthase, F1 complex, delta/epsilon subunit, N-terminal IPR020547 - ATP synthase delta/epsilon subunit, C-terminal domain IPR036771 - F0F1 ATP synthase delta/epsilon subunit, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

ASY96329.1 ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis]

4.4e-65

99.26

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Query:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRL PNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

YP_004841789.1 ATP synthase CF1 epsilon subunit [Cucumis melo subsp. melo]

1.1e-65

100

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Query:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

YP_009346490.1 ATP synthase CF1 epsilon subunit [Cucumis x hytivus]

2.6e-65

99.26

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Query:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        AEANL+KAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

YP_009752081.1 CF1 subunit epsilon [Dendrosicyos socotranus]

8.2e-64

97.79

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Query:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLP+HAPIATAVDIGIL+IRLT NDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

YP_010131100.1 ATP synthase CF1 epsilon subunit [Benincasa hispida]

1.7e-64

98.53

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Query:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        AEANLR+AQGKRQTIEANLALRRARTRVEAIN VPS
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU14 ATP synthase epsilon chain, chloroplastic

5.5e-66

100

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Query:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

A0A1X9Q1L0 ATP synthase epsilon chain, chloroplastic

5.5e-66

100

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Query:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

A0A218KG49 ATP synthase epsilon chain, chloroplastic

5.5e-66

100

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Query:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

A0A249RZA2 ATP synthase epsilon chain, chloroplastic

5.5e-66

100

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Query:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

G3ETZ1 ATP synthase epsilon chain, chloroplastic

5.5e-66

100

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Query:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

SwissProt top hits

e value

%identity

Alignment

A0ZZ41 ATP synthase epsilon chain, chloroplastic

1.1e-58

89.55

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Query:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
        MTLNL VLTPNRI+WDSEVKEIIL TNSGQIGVLP+HAPIATAVDIGIL+IRL  ND WLTMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQQ LEI
Subjt:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGV
        AEANLRKA+GKRQTIEANLALRRARTRVEAIN +
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGV

Q1KXV3 ATP synthase epsilon chain, chloroplastic

2.4e-58

88.81

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Query:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
        MTLNL VLTPNRI+WDSEVKEIIL TNSGQIGVLP+HAPIATAVDIGIL+IRL  ND WLTMALMGGFARIGNNE+T+LVNDAEK+SDIDPQEAQQTLEI
Subjt:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGV
        AEA LRKA+GKRQTIEANLALRRARTRVEAIN +
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGV

Q2L911 ATP synthase epsilon chain, chloroplastic

1.1e-58

89.55

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Query:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
        MTLNL VLTPNRI+WDSEVKEIIL TNSGQIGVLP+HAPIATAVDIGIL+IRL  ND WLTMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQQ LEI
Subjt:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGV
        AEANLRKA+GKRQTIEANLALRRARTRVEAIN +
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGV

Q49KZ2 ATP synthase epsilon chain, chloroplastic

2.4e-58

88.06

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Query:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
        MTLNL VLTPNRI+WDSEVKEIIL TN+GQIGVLP+HAPIATAVDIGIL+IRL  ND WLTMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQ+TLE+
Subjt:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGV
        AEANLRKA+GKRQTIEANLALRRARTRVEAIN +
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGV

Q4VZG9 ATP synthase epsilon chain, chloroplastic

1.5e-68

100

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Query:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

Arabidopsis top hits

e value

%identity

Alignment

ATCG00470.1 ATP synthase epsilon chain

7.2e-58

88.06

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Query:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI
        MTLNL VLTPNRI+WDSEVKEIIL TNSGQIGVL +HAPIATAVDIGILKIRL   + WLTMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQQTLEI
Subjt:  MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGV
        AEANLRKA+GKRQTIEANLALRRARTRVEA+N +
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEAINGV

Sequences

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CDS sequence

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ATGACCTTAAATCTTAGTGTCCTGACTCCGAATCGAATTATTTGGGATTCAGAAGTGAAAGAAATCATTTTAGTTACGAATAGTGGCCAAATTGGTGTATTACCAGATCA
CGCACCTATTGCCACAGCTGTAGATATAGGTATTTTGAAAATACGCCTTACTCCTAATGACGGATGGTTAACGATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATA
ATGAGGTCACTATTTTAGTAAATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGAAGCTAACTTGAGGAAAGCTCAGGGC
AAGAGACAAACAATCGAGGCAAATTTAGCTCTCAGACGAGCTAGGACACGAGTAGAGGCTATCAATGGCGTACCAAGTTAA

mRNA sequence

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Protein sequence

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MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG
KRQTIEANLALRRARTRVEAINGVPS

HG10003546 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome