; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10003601 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003601
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr08:3951339..3951975
RNA-Seq ExpressionHG10003601
SyntenyHG10003601
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8772052.1 hypothetical protein D1007_55969 [Hordeum vulgare]7.4e-1126.37Show/hide
Query:  CPVCSSNVESTDHILISCPRTKLIWDQISTSNLLKED-LNNNFKERWHMLSLNCNKDELNIFAIDLLN--------------------------------
        CP C    +S  H L  C R+  +W Q+   +++K+        E   +  L+ +  E+NI     L                                 
Subjt:  CPVCSSNVESTDHILISCPRTKLIWDQISTSNLLKED-LNNNFKERWHMLSLNCNKDELNIFAIDLLN--------------------------------

Query:  ----------------PIQRGGWTKLPPDFFKLNVDAACVQGVPITGLGAIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCSNLIVES
                         I+ GGW K P  + KLNVDA   Q +    +GAI+RD  G    AA + I + +DP +AE LA+R G+ LA    CS +++ S
Subjt:  ----------------PIQRGGWTKLPPDFFKLNVDAACVQGVPITGLGAIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCSNLIVES

Query:  D
        D
Subjt:  D

KAF7838458.1 reverse transcriptase [Senna tora]5.7e-1130.9Show/hide
Query:  MNIIPTCPVCSSNVESTDHILISCPRTKLIWDQISTSNLLKEDLNNNFKERWHMLSLNCNKDELN---------------IFAIDLLNPIQRG-----GW
        +NI+  CPVCS  VES DH+  SC  T+ +W+ ++ +  + +  + +  ++W  L LN    + +               ++     +P +       GW
Subjt:  MNIIPTCPVCSSNVESTDHILISCPRTKLIWDQISTSNLLKEDLNNNFKERWHMLSLNCNKDELN---------------IFAIDLLNPIQRG-----GW

Query:  TKLPPDFFKLNVDAACVQGVPITGLGAIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCSNLIVESD
           P  ++KLN D +C     + G G IIRD+ G+      K +  + D  LAE+ AI EG+ LA   HC  LIVESD
Subjt:  TKLPPDFFKLNVDAACVQGVPITGLGAIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCSNLIVESD

XP_026459229.1 uncharacterized protein LOC113359871 [Papaver somniferum]4.3e-1130.56Show/hide
Query:  NIIPTCPVCSSNVESTDHILISCPRTKLIW------------DQISTSNLLKEDLNNNFKE----RWHMLSLN----CNKDELNIFAIDLLNPIQRGGWT
        NI   CP+C S  E+  H+LI C     IW             QIS S  +    +++  +    RW  + +N    C K+E     +   N IQ   WT
Subjt:  NIIPTCPVCSSNVESTDHILISCPRTKLIW------------DQISTSNLLKEDLNNNFKE----RWHMLSLN----CNKDELNIFAIDLLNPIQRGGWT

Query:  KLPPDFFKLNVDAACVQGVPITGLGAIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHC--SNLIVESDC
          P    K+N+DA+        G+G IIRDS G   G   +  +   DP   E LA++  I  A + +   SNL+ E+DC
Subjt:  KLPPDFFKLNVDAACVQGVPITGLGAIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHC--SNLIVESDC

XP_028111659.1 uncharacterized protein LOC114309966 [Camellia sinensis]3.9e-1230.26Show/hide
Query:  CPVCSSNVESTDHILISCPRTKLIWDQISTSNLLKEDLNNNFKERWHMLSLNCNKDELNIFAIDLLNPIQRGGWTKLPPDFFKLNVDAACVQGVPITGLG
        CP+C S +E  +H+L  CP TK +W   + +N   +      + R+H LS N      ++  ++  +P     W+      FK+N DAA  Q      + 
Subjt:  CPVCSSNVESTDHILISCPRTKLIWDQISTSNLLKEDLNNNFKERWHMLSLNCNKDELNIFAIDLLNPIQRGGWTKLPPDFFKLNVDAACVQGVPITGLG

Query:  AIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCSNLIVESD
        AIIRDS GH     A+ +       L E LA+R    +      SN+ +ESD
Subjt:  AIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCSNLIVESD

XP_030926547.1 uncharacterized protein LOC115953156 [Quercus lobata]7.4e-1125.64Show/hide
Query:  CPVCSSNVESTDHILISCPRTKLIWDQISTSNLLKEDLNNNFKERWHMLSLNCNKDELNIF---------------------------------------
        CPVC ++ ES DH L+ C  + L+WD    + L  +   N+F +    +  +    +L IF                                       
Subjt:  CPVCSSNVESTDHILISCPRTKLIWDQISTSNLLKEDLNNNFKERWHMLSLNCNKDELNIF---------------------------------------

Query:  ----AIDLLNPIQRGGWTKLPPDFFKLNVDAACVQGVPITGLGAIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCSNLIVESD
              DL+ P     W+  PP  FK+NVD A  +    + +G +IRDS G +  A    +   F   L+EV A+ +G+  A +     +IVESD
Subjt:  ----AIDLLNPIQRGGWTKLPPDFFKLNVDAACVQGVPITGLGAIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCSNLIVESD

TrEMBL top hitse value%identityAlignment
A0A0Q3GGJ7 RNase H domain-containing protein2.3e-1025.87Show/hide
Query:  CPVCSSNVESTDHILISCPRTKLIWDQISTSNLLKEDLNNN--------------------------------------FKERWHMLSLNCNKDELNIFA
        C  C + VE   H+L +C R K +W  +    L+ + L  +                                      ++ R  M        +   F+
Subjt:  CPVCSSNVESTDHILISCPRTKLIWDQISTSNLLKEDLNNN--------------------------------------FKERWHMLSLNCNKDELNIFA

Query:  IDLL-----------NPIQRGGWTKLPPDFFKLNVDAACVQGVPITGLGAIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCSNLIVES
        I  L           + IQR GW K P    KLNVDA+ ++       GA+IRD+ G    A+   I + +D  +AE +A+  GIQ A    CSNL++ S
Subjt:  IDLL-----------NPIQRGGWTKLPPDFFKLNVDAACVQGVPITGLGAIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCSNLIVES

Query:  D
        D
Subjt:  D

A0A2K2CVF0 RNase H domain-containing protein1.4e-1044.05Show/hide
Query:  IQRGGWTKLPPDFFKLNVDAACVQGVPITGLGAIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCSNLIVESD
        IQR GW + P    KLNVD +  + +     GA+IRD+ G   GA+   I + +D   AE LA+  GIQLA  F CSNL++ SD
Subjt:  IQRGGWTKLPPDFFKLNVDAACVQGVPITGLGAIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCSNLIVESD

A0A453EWI8 Uncharacterized protein6.1e-1126.09Show/hide
Query:  MNIIPTCPVCSSNVESTDHILISCPRTKLIWDQISTSNLL---------------------KEDLN----NNFKE-----RWHM-----------LSLNC
        M + P+CP CS  +E T H+L  C + K +W ++    ++                      +DL+     N +E      W++           L+ N 
Subjt:  MNIIPTCPVCSSNVESTDHILISCPRTKLIWDQISTSNLL---------------------KEDLN----NNFKE-----RWHM-----------LSLNC

Query:  NKDELNIFAI--DLLN------PIQRGGWTKLPPDFFKLNVDAACVQGVPITGLGAIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCS
        N+  + I A+  + +N       +++GGW   P  F KLNVDA+    +    +GA++RD KG         I+   D  +AE LA++ G+ +A +  C+
Subjt:  NKDELNIFAI--DLLN------PIQRGGWTKLPPDFFKLNVDAACVQGVPITGLGAIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCS

Query:  NLIVESD
         LI+ SD
Subjt:  NLIVESD

A0A7H4L9Z4 Genome assembly, chromosome: II2.3e-1039.78Show/hide
Query:  IFAIDLLNPIQRGGWTKLPPDFFKLNVDAACVQGVPITGLGAIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCSNLIVESD
        + A D    +++ GW K P  F KLNVDAA         +GA+IRD +GH   +  K+I   +DP   E LA++ G+QL+S   C+ L+V SD
Subjt:  IFAIDLLNPIQRGGWTKLPPDFFKLNVDAACVQGVPITGLGAIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCSNLIVESD

M5X848 Uncharacterized protein4.7e-1128.74Show/hide
Query:  CPVCSSNVESTDHILISCPRTKLIWDQISTSNLLKEDLNNNFKERWHMLSLNCNKDELNIF--AIDLLNPI-------------QRGGWTKLPPDFFKLN
        CP+C  N E+  H++ SCP  + +W ++    + K    + + + +      C+K E  IF  A+ L                 +   W+  P   FKLN
Subjt:  CPVCSSNVESTDHILISCPRTKLIWDQISTSNLLKEDLNNNFKERWHMLSLNCNKDELNIF--AIDLLNPI-------------QRGGWTKLPPDFFKLN

Query:  VDAACVQGVPITGLGAIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCSNLIVESD
        VDAA +    + G+GA+IR+ KG +  A A  ++    P  AE++A++ G+  A     S+++VESD
Subjt:  VDAACVQGVPITGLGAIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCSNLIVESD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATATTATTCCTACTTGTCCTGTCTGCTCAAGTAATGTTGAATCCACCGATCACATTCTTATAAGTTGTCCTCGGACAAAACTTATATGGGATCAGATTTCGACTTC
GAACCTTCTAAAGGAGGATTTGAATAATAATTTCAAGGAACGCTGGCATATGTTAAGCTTGAACTGCAACAAGGATGAGTTGAATATTTTTGCTATTGATCTGTTGAATC
CTATTCAGAGAGGTGGTTGGACCAAACTGCCCCCTGATTTCTTTAAACTAAATGTTGATGCAGCTTGTGTGCAGGGTGTTCCGATTACTGGTTTGGGGGCTATAATCAGA
GATTCCAAAGGACACATTACTGGTGCTGCTGCTAAGATGATTAATCTGGATTTTGATCCTCCTCTAGCCGAAGTTCTCGCTATCAGAGAAGGAATTCAGCTTGCTTCCAA
ATTTCACTGCTCGAATCTTATTGTGGAATCTGATTGCTCCCCAAGCTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATATTATTCCTACTTGTCCTGTCTGCTCAAGTAATGTTGAATCCACCGATCACATTCTTATAAGTTGTCCTCGGACAAAACTTATATGGGATCAGATTTCGACTTC
GAACCTTCTAAAGGAGGATTTGAATAATAATTTCAAGGAACGCTGGCATATGTTAAGCTTGAACTGCAACAAGGATGAGTTGAATATTTTTGCTATTGATCTGTTGAATC
CTATTCAGAGAGGTGGTTGGACCAAACTGCCCCCTGATTTCTTTAAACTAAATGTTGATGCAGCTTGTGTGCAGGGTGTTCCGATTACTGGTTTGGGGGCTATAATCAGA
GATTCCAAAGGACACATTACTGGTGCTGCTGCTAAGATGATTAATCTGGATTTTGATCCTCCTCTAGCCGAAGTTCTCGCTATCAGAGAAGGAATTCAGCTTGCTTCCAA
ATTTCACTGCTCGAATCTTATTGTGGAATCTGATTGCTCCCCAAGCTATTAA
Protein sequenceShow/hide protein sequence
MNIIPTCPVCSSNVESTDHILISCPRTKLIWDQISTSNLLKEDLNNNFKERWHMLSLNCNKDELNIFAIDLLNPIQRGGWTKLPPDFFKLNVDAACVQGVPITGLGAIIR
DSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCSNLIVESDCSPSY