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HG10003620 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003620
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr08:4277971..4278404
RNA-Seq ExpressionHG10003620
SyntenyHG10003620
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONI12089.1 hypothetical protein PRUPE_4G143500 [Prunus persica]1.3e-0529.41Show/hide
Query:  GMGAALHDDYGRVITAHALVRTGCVSAEDA-------GLKLAKAHGCSGFWVEMDAKIVVKKI-QTLSFSLVPNGVIYAEAFSSMERLGVTGLVYVSRSC
        G+GA + +D G V+ A AL      S++ A       G+K A+  GCS   +E D++ VV  + +    S   +G +  +   S++      + Y  R  
Subjt:  GMGAALHDDYGRVITAHALVRTGCVSAEDA-------GLKLAKAHGCSGFWVEMDAKIVVKKI-QTLSFSLVPNGVIYAEAFSSMERLGVTGLVYVSRSC

Query:  NRVTHNFSNQAIVTNSSYVWIGCVPPWLSNIIGAEM
        N+V H  +  A+  N+   WI  VP WL +II  +M
Subjt:  NRVTHNFSNQAIVTNSSYVWIGCVPPWLSNIIGAEM

RYE02783.1 reverse transcriptase-like protein, partial [Rickettsiaceae bacterium]5.6e-0427.54Show/hide
Query:  GMGAALHDDYGRVITAHALVRTGCVSAEDA-------GLKLAKAHGCSGFWVEMDAKIVVKKIQTLSFSLVPNGVIYAEAFSSMERLGVTGLVYVSRSCN
        G+G  + D  G VI +  L      S + A       G++L ++ G     ++ D   VV+ I          G I    F  +  L V  ++++SR CN
Subjt:  GMGAALHDDYGRVITAHALVRTGCVSAEDA-------GLKLAKAHGCSGFWVEMDAKIVVKKIQTLSFSLVPNGVIYAEAFSSMERLGVTGLVYVSRSCN

Query:  RVTHNFSNQAIVTNSSYVWIGCVPPWLSNIIGAEMEDL
           HN +  A+  +SS  W+G VPP     I A+  +L
Subjt:  RVTHNFSNQAIVTNSSYVWIGCVPPWLSNIIGAEMEDL

XP_020417817.1 uncharacterized protein LOC18779081 [Prunus persica]1.3e-0529.41Show/hide
Query:  GMGAALHDDYGRVITAHALVRTGCVSAEDA-------GLKLAKAHGCSGFWVEMDAKIVVKKI-QTLSFSLVPNGVIYAEAFSSMERLGVTGLVYVSRSC
        G+GA + +D G V+ A AL      S++ A       G+K A+  GCS   +E D++ VV  + +    S   +G +  +   S++      + Y  R  
Subjt:  GMGAALHDDYGRVITAHALVRTGCVSAEDA-------GLKLAKAHGCSGFWVEMDAKIVVKKI-QTLSFSLVPNGVIYAEAFSSMERLGVTGLVYVSRSC

Query:  NRVTHNFSNQAIVTNSSYVWIGCVPPWLSNIIGAEM
        N+V H  +  A+  N+   WI  VP WL +II  +M
Subjt:  NRVTHNFSNQAIVTNSSYVWIGCVPPWLSNIIGAEM

TrEMBL top hitse value%identityAlignment
A0A251PKK0 RNase H domain-containing protein6.4e-0629.41Show/hide
Query:  GMGAALHDDYGRVITAHALVRTGCVSAEDA-------GLKLAKAHGCSGFWVEMDAKIVVKKI-QTLSFSLVPNGVIYAEAFSSMERLGVTGLVYVSRSC
        G+GA + +D G V+ A AL      S++ A       G+K A+  GCS   +E D++ VV  + +    S   +G +  +   S++      + Y  R  
Subjt:  GMGAALHDDYGRVITAHALVRTGCVSAEDA-------GLKLAKAHGCSGFWVEMDAKIVVKKI-QTLSFSLVPNGVIYAEAFSSMERLGVTGLVYVSRSC

Query:  NRVTHNFSNQAIVTNSSYVWIGCVPPWLSNIIGAEM
        N+V H  +  A+  N+   WI  VP WL +II  +M
Subjt:  NRVTHNFSNQAIVTNSSYVWIGCVPPWLSNIIGAEM

A0A4Q3DBE2 Reverse transcriptase-like protein (Fragment)2.7e-0427.54Show/hide
Query:  GMGAALHDDYGRVITAHALVRTGCVSAEDA-------GLKLAKAHGCSGFWVEMDAKIVVKKIQTLSFSLVPNGVIYAEAFSSMERLGVTGLVYVSRSCN
        G+G  + D  G VI +  L      S + A       G++L ++ G     ++ D   VV+ I          G I    F  +  L V  ++++SR CN
Subjt:  GMGAALHDDYGRVITAHALVRTGCVSAEDA-------GLKLAKAHGCSGFWVEMDAKIVVKKIQTLSFSLVPNGVIYAEAFSSMERLGVTGLVYVSRSCN

Query:  RVTHNFSNQAIVTNSSYVWIGCVPPWLSNIIGAEMEDL
           HN +  A+  +SS  W+G VPP     I A+  +L
Subjt:  RVTHNFSNQAIVTNSSYVWIGCVPPWLSNIIGAEMEDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATGGGAGCTGCTTTGCACGATGATTATGGGAGAGTCATTACTGCCCATGCTCTTGTTCGTACAGGTTGTGTGTCGGCCGAAGATGCTGGTTTGAAGTTGGCTAA
AGCTCACGGATGCTCGGGGTTTTGGGTGGAGATGGATGCTAAAATTGTGGTGAAGAAGATTCAGACTCTTTCCTTTTCATTAGTCCCTAATGGTGTTATTTATGCTGAAG
CATTCTCCTCAATGGAAAGGTTGGGGGTTACGGGCTTGGTTTATGTTTCTAGAAGTTGTAATAGGGTGACCCATAATTTTTCCAATCAAGCAATTGTAACTAATTCTTCT
TATGTTTGGATTGGTTGTGTTCCCCCATGGCTTTCAAACATTATTGGGGCTGAGATGGAGGATTTGAGTCTTGTTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGATGGGAGCTGCTTTGCACGATGATTATGGGAGAGTCATTACTGCCCATGCTCTTGTTCGTACAGGTTGTGTGTCGGCCGAAGATGCTGGTTTGAAGTTGGCTAA
AGCTCACGGATGCTCGGGGTTTTGGGTGGAGATGGATGCTAAAATTGTGGTGAAGAAGATTCAGACTCTTTCCTTTTCATTAGTCCCTAATGGTGTTATTTATGCTGAAG
CATTCTCCTCAATGGAAAGGTTGGGGGTTACGGGCTTGGTTTATGTTTCTAGAAGTTGTAATAGGGTGACCCATAATTTTTCCAATCAAGCAATTGTAACTAATTCTTCT
TATGTTTGGATTGGTTGTGTTCCCCCATGGCTTTCAAACATTATTGGGGCTGAGATGGAGGATTTGAGTCTTGTTGGATGA
Protein sequenceShow/hide protein sequence
MGMGAALHDDYGRVITAHALVRTGCVSAEDAGLKLAKAHGCSGFWVEMDAKIVVKKIQTLSFSLVPNGVIYAEAFSSMERLGVTGLVYVSRSCNRVTHNFSNQAIVTNSS
YVWIGCVPPWLSNIIGAEMEDLSLVG