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HG10003625 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003625
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr08:4321853..4322137
RNA-Seq ExpressionHG10003625
SyntenyHG10003625
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF0920597.1 hypothetical protein E2562_035741 [Oryza meyeriana var. granulata]1.3e-1546.84Show/hide
Query:  RRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQERIWIQVNYERLPDFCYGYGRIGHVVKEC
        R +G+ +GK LEVD D++   +G  LR+K L+D+ KPL RG+ +  G+ +   W    YE LP+FCY YG +GHV KEC
Subjt:  RRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQERIWIQVNYERLPDFCYGYGRIGHVVKEC

PON92154.1 Zinc knuckle CX2CX4HX4C [Trema orientale]1.7e-1540.91Show/hide
Query:  MARRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQERIWIQVNYERLPDFCYGYGRIGHVVKECKFDLKDK
        +A+ LG+  G+++EV+ D +  CLG  L +++++DI+KPLRRG  +  G     IW+   Y RLPDFC+  G+IGH + +C  ++ DK
Subjt:  MARRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQERIWIQVNYERLPDFCYGYGRIGHVVKECKFDLKDK

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]4.0e-1751.85Show/hide
Query:  MARRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQERIWIQVNYERLPDFCYGYGRIGHVVKEC
        MA RLG+A+G +++VDC++  F  G SLR+++L+DI+KPLRRGI I+        WI + YERLPDFCY  G IGH   +C
Subjt:  MARRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQERIWIQVNYERLPDFCYGYGRIGHVVKEC

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]2.0e-1649.38Show/hide
Query:  MARRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQERIWIQVNYERLPDFCYGYGRIGHVVKEC
        +A ++G+ LG+++EVD + D F  G  LR+K+ ++I KPLRRGI I  GE  +  W  + YE LPDFCY  GRIGH  K C
Subjt:  MARRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQERIWIQVNYERLPDFCYGYGRIGHVVKEC

XP_039827601.1 uncharacterized protein LOC120689378 [Panicum virgatum]2.6e-1647.19Show/hide
Query:  MARRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQERIWIQVNYERLPDFCYGYGRIGHVVKECKFDLKDKE
        +A ++G+ LG+++EVD + D F  G  LR+K+ ++I KPLRRGI I  GE  +  W  + YE LPDFCY  GRIGH  K C   L  +E
Subjt:  MARRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQERIWIQVNYERLPDFCYGYGRIGHVVKECKFDLKDKE

TrEMBL top hitse value%identityAlignment
A0A0A9A291 CCHC-type domain-containing protein6.9e-1543.75Show/hide
Query:  MARRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQE-------RIWIQVNYERLPDFCYGYGRIGHVVKECKFDLKDKE
        + ++LG  +GK ++V+ D+D +  GE LR+K+ LDISKPL RG+WI   E+ E       R +  V YE+LP+FCY  G+IGH+ +EC+  L+  E
Subjt:  MARRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQE-------RIWIQVNYERLPDFCYGYGRIGHVVKECKFDLKDKE

A0A2P5F2Z2 Zinc knuckle CX2CX4HX4C8.1e-1640.91Show/hide
Query:  MARRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQERIWIQVNYERLPDFCYGYGRIGHVVKECKFDLKDK
        +A+ LG+  G+++EV+ D +  CLG  L +++++DI+KPLRRG  +  G     IW+   Y RLPDFC+  G+IGH + +C  ++ DK
Subjt:  MARRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQERIWIQVNYERLPDFCYGYGRIGHVVKECKFDLKDK

A0A2T7EQ43 CCHC-type domain-containing protein1.1e-1542.86Show/hide
Query:  MARRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQERIWIQVNYERLPDFCYGYGRIGHVVKECKFDLKDKEIE
        M + +G  +G+++ ++ + D   +G+ L +K  LDI KPL RG  +H G+D++ IW  + YE LPDFCY  GRIGH+ K C+  LKD E +
Subjt:  MARRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQERIWIQVNYERLPDFCYGYGRIGHVVKECKFDLKDKEIE

A0A6G1E7A7 Uncharacterized protein6.2e-1646.84Show/hide
Query:  RRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQERIWIQVNYERLPDFCYGYGRIGHVVKEC
        R +G+ +GK LEVD D++   +G  LR+K L+D+ KPL RG+ +  G+ +   W    YE LP+FCY YG +GHV KEC
Subjt:  RRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQERIWIQVNYERLPDFCYGYGRIGHVVKEC

A0A6J1DU55 uncharacterized protein LOC1110231351.9e-1751.85Show/hide
Query:  MARRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQERIWIQVNYERLPDFCYGYGRIGHVVKEC
        MA RLG+A+G +++VDC++  F  G SLR+++L+DI+KPLRRGI I+        WI + YERLPDFCY  G IGH   +C
Subjt:  MARRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQERIWIQVNYERLPDFCYGYGRIGHVVKEC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGAAGACTGGGTGATGCTTTGGGCAAATATCTTGAAGTAGATTGCGATCAAGACAATTTCTGCTTAGGAGAAAGTCTTCGATTAAAAATCCTATTGGACATTTC
AAAACCTCTAAGAAGGGGAATTTGGATTCATCCAGGTGAAGACCAAGAGAGAATTTGGATTCAAGTCAATTATGAGAGGTTACCCGATTTCTGTTATGGCTATGGAAGAA
TTGGTCATGTGGTTAAAGAGTGCAAATTTGATCTTAAAGATAAAGAGATAGAAGCTGAATCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGAAGACTGGGTGATGCTTTGGGCAAATATCTTGAAGTAGATTGCGATCAAGACAATTTCTGCTTAGGAGAAAGTCTTCGATTAAAAATCCTATTGGACATTTC
AAAACCTCTAAGAAGGGGAATTTGGATTCATCCAGGTGAAGACCAAGAGAGAATTTGGATTCAAGTCAATTATGAGAGGTTACCCGATTTCTGTTATGGCTATGGAAGAA
TTGGTCATGTGGTTAAAGAGTGCAAATTTGATCTTAAAGATAAAGAGATAGAAGCTGAATCCTAG
Protein sequenceShow/hide protein sequence
MARRLGDALGKYLEVDCDQDNFCLGESLRLKILLDISKPLRRGIWIHPGEDQERIWIQVNYERLPDFCYGYGRIGHVVKECKFDLKDKEIEAES