; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10003649 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003649
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationChr08:4871590..4872764
RNA-Seq ExpressionHG10003649
SyntenyHG10003649
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5932260.1 hypothetical protein HYC85_028431 [Camellia sinensis]1.2e-1226.55Show/hide
Query:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMSQR-------------------------------------------GRSK
        +++T R LE TRQ P E F+DF+ RW+AKA+ +   P +K+++RI++ N+  +                                            R+ 
Subjt:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMSQR-------------------------------------------GRSK

Query:  RKEDSPGGTSKNSEVNVLSDVKPKTP--------------------------RTFTPLGITLA-------------------------APWKSFKSMVYS
            S   T++ SEV+V++ + P  P                          RTFTPL I L                            +   K   Y 
Subjt:  RKEDSPGGTSKNSEVNVLSDVKPKTP--------------------------RTFTPLGITLA-------------------------APWKSFKSMVYS

Query:  RLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPAGEKGETDGRDMIGIRETRLSPHLEFTCS
        +   H       LRH+I  L++K  I PP  ++PNVTTNPLP H   PPP  IN I+   +S+DPS+ ITP+           +   E  LS   +F C 
Subjt:  RLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPAGEKGETDGRDMIGIRETRLSPHLEFTCS

Query:  GGMISTTISQPLNNPSNYSRKAQKVKHLSFTLARIPQPF
           ISTT  +P    +      Q + +  F  A+I Q F
Subjt:  GGMISTTISQPLNNPSNYSRKAQKVKHLSFTLARIPQPF

KAF5933094.1 hypothetical protein HYC85_029265 [Camellia sinensis]2.7e-1229.02Show/hide
Query:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMSQR---------------------------GRSKRKEDSPGGTSKNSEVN
        +++T R LE TRQ P ETF+DF+ RW+AKA+ +   P +K+++R+++ N+  +                            R+     S    ++ SEV+
Subjt:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMSQR---------------------------GRSKRKEDSPGGTSKNSEVN

Query:  VLSDVKPKTP--------------------------RTFTP--------LGI-----------------TLAAPWKSFKSMVYSRLFPH-------LRHQ
        +++   P  P                          RTFTP        LGI                  L   +   K   Y +   H       LRH+
Subjt:  VLSDVKPKTP--------------------------RTFTP--------LGI-----------------TLAAPWKSFKSMVYSRLFPH-------LRHQ

Query:  ILFLLEK--IEPPRANRPNVTTNPLPTHAVPPPAN-INMIEPTFSSWDPSLLITP
        I  L++K  I PP  ++PNVTTNPLP H  PPP N IN I+   +S+DPS+ ITP
Subjt:  ILFLLEK--IEPPRANRPNVTTNPLPTHAVPPPAN-INMIEPTFSSWDPSLLITP

KAF5933771.1 hypothetical protein HYC85_029942 [Camellia sinensis]2.0e-1227.83Show/hide
Query:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMS-----------------------------------------QRGRSKRK
        +++T R LE TRQ P ETF+DF+ RW+AKA+ +   P +K+++R+++ N+                                          +R  ++  
Subjt:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMS-----------------------------------------QRGRSKRK

Query:  EDSPGG--TSKNSEVNVLSDVKPKTP--------------------------RTFTPLGITLA-------------------------APWKSFKSMVYS
          SP G  T++ SEV++++ + P  P                          RTFTPL ITL+                               K   Y 
Subjt:  EDSPGG--TSKNSEVNVLSDVKPKTP--------------------------RTFTPLGITLA-------------------------APWKSFKSMVYS

Query:  RLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPAG-EKGE------TDGRDMIGIRETRLSP
        +   H       LRH+I  L++K  I PP   +PNVTTNPLPTH   PPP  +N I+    S+DPS+ ITP    K E      TD   M+ I  T+  P
Subjt:  RLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPAG-EKGE------TDGRDMIGIRETRLSP

Query:  HLEFTCSGG
         +     GG
Subjt:  HLEFTCSGG

KAF5934346.1 hypothetical protein HYC85_030517 [Camellia sinensis]1.7e-1128.93Show/hide
Query:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMSQR---------------GRSKRKEDSPGGTSKNSEVNVLSDVKPKTP--
        +++T R LE TRQ   E+F+DF+ RW+AKA+ +   P +K+++R+++ N+  +                R+     S   T++ SEV++++ + P  P  
Subjt:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMSQR---------------GRSKRKEDSPGGTSKNSEVNVLSDVKPKTP--

Query:  ------------------------RTFTP--------LGI-----------------TLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEP
                                R FTP        LG+                  L       K   Y +   H       LRH+I  L++K  I P
Subjt:  ------------------------RTFTP--------LGI-----------------TLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEP

Query:  PRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLIT
        P   RPNVTTNPLPTH   PPP  +N I+    S+DPS+ IT
Subjt:  PRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLIT

KAF5934569.1 hypothetical protein HYC85_030740 [Camellia sinensis]2.9e-1126.47Show/hide
Query:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMSQR-------------------------------------------GRSK
        +++T R LE TRQ P E F+DF+ RW+AKA+ +   P +K+++R+++ N+  +                                            R+ 
Subjt:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMSQR-------------------------------------------GRSK

Query:  RKEDSPGGTSKNSEVNVLSDVKPKTP--------------------------RTFTPLGITLA-------------------------APWKSFKSMVYS
            S   T++ SEV+V++ + P  P                          RTFTPL + L                            +   K   Y 
Subjt:  RKEDSPGGTSKNSEVNVLSDVKPKTP--------------------------RTFTPLGITLA-------------------------APWKSFKSMVYS

Query:  RLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPA
        +   H       LRH+I  L++K  I PP  ++PNVTTNPLP H   PPP  IN I+   +S+DPS+ ITP+
Subjt:  RLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPA

TrEMBL top hitse value%identityAlignment
A0A7J7FV54 Retrotrans_gag domain-containing protein5.8e-1326.55Show/hide
Query:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMSQR-------------------------------------------GRSK
        +++T R LE TRQ P E F+DF+ RW+AKA+ +   P +K+++RI++ N+  +                                            R+ 
Subjt:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMSQR-------------------------------------------GRSK

Query:  RKEDSPGGTSKNSEVNVLSDVKPKTP--------------------------RTFTPLGITLA-------------------------APWKSFKSMVYS
            S   T++ SEV+V++ + P  P                          RTFTPL I L                            +   K   Y 
Subjt:  RKEDSPGGTSKNSEVNVLSDVKPKTP--------------------------RTFTPLGITLA-------------------------APWKSFKSMVYS

Query:  RLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPAGEKGETDGRDMIGIRETRLSPHLEFTCS
        +   H       LRH+I  L++K  I PP  ++PNVTTNPLP H   PPP  IN I+   +S+DPS+ ITP+           +   E  LS   +F C 
Subjt:  RLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPAGEKGETDGRDMIGIRETRLSPHLEFTCS

Query:  GGMISTTISQPLNNPSNYSRKAQKVKHLSFTLARIPQPF
           ISTT  +P    +      Q + +  F  A+I Q F
Subjt:  GGMISTTISQPLNNPSNYSRKAQKVKHLSFTLARIPQPF

A0A7J7FWN3 Uncharacterized protein2.4e-1126.47Show/hide
Query:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMSQR-------------------------------------------GRSK
        +++T R LE TRQ P E F+DF+ RW+AKA+ +   P +K+++R+++ N+  +                                            R+ 
Subjt:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMSQR-------------------------------------------GRSK

Query:  RKEDSPGGTSKNSEVNVLSDVKPKTP--------------------------RTFTPLGITLAAPW-----KSFKSMVYSRLFPH---------------
            S   T++ SEV+V++ + P  P                          RTFTPL + L         K+    +  R  P+               
Subjt:  RKEDSPGGTSKNSEVNVLSDVKPKTP--------------------------RTFTPLGITLAAPW-----KSFKSMVYSRLFPH---------------

Query:  ------------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPA
                    LRH+I  L++K  I PP  ++PNVTTNPLP H   PPP  IN I+   +S+DPS+ ITP+
Subjt:  ------------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPA

A0A7J7G0P3 Retrotrans_gag domain-containing protein9.9e-1327.83Show/hide
Query:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMS-----------------------------------------QRGRSKRK
        +++T R LE TRQ P ETF+DF+ RW+AKA+ +   P +K+++R+++ N+                                          +R  ++  
Subjt:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMS-----------------------------------------QRGRSKRK

Query:  EDSPGG--TSKNSEVNVLSDVKPKTP--------------------------RTFTPLGITLA-------------------------APWKSFKSMVYS
          SP G  T++ SEV++++ + P  P                          RTFTPL ITL+                               K   Y 
Subjt:  EDSPGG--TSKNSEVNVLSDVKPKTP--------------------------RTFTPLGITLA-------------------------APWKSFKSMVYS

Query:  RLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPAG-EKGE------TDGRDMIGIRETRLSP
        +   H       LRH+I  L++K  I PP   +PNVTTNPLPTH   PPP  +N I+    S+DPS+ ITP    K E      TD   M+ I  T+  P
Subjt:  RLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPAG-EKGE------TDGRDMIGIRETRLSP

Query:  HLEFTCSGG
         +     GG
Subjt:  HLEFTCSGG

A0A7J7G1F2 Retrotrans_gag domain-containing protein1.3e-1229.02Show/hide
Query:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMSQR---------------------------GRSKRKEDSPGGTSKNSEVN
        +++T R LE TRQ P ETF+DF+ RW+AKA+ +   P +K+++R+++ N+  +                            R+     S    ++ SEV+
Subjt:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMSQR---------------------------GRSKRKEDSPGGTSKNSEVN

Query:  VLSDVKPKTP--------------------------RTFTP--------LGI-----------------TLAAPWKSFKSMVYSRLFPH-------LRHQ
        +++   P  P                          RTFTP        LGI                  L   +   K   Y +   H       LRH+
Subjt:  VLSDVKPKTP--------------------------RTFTP--------LGI-----------------TLAAPWKSFKSMVYSRLFPH-------LRHQ

Query:  ILFLLEK--IEPPRANRPNVTTNPLPTHAVPPPAN-INMIEPTFSSWDPSLLITP
        I  L++K  I PP  ++PNVTTNPLP H  PPP N IN I+   +S+DPS+ ITP
Subjt:  ILFLLEK--IEPPRANRPNVTTNPLPTHAVPPPAN-INMIEPTFSSWDPSLLITP

A0A7J7G1N0 Reverse transcriptase domain-containing protein1.4e-1126.47Show/hide
Query:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMSQR-------------------------------------------GRSK
        +++T R LE TRQ P E F+DF+ RW+AKA+ +   P +K+++R+++ N+  +                                            R+ 
Subjt:  MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMSQR-------------------------------------------GRSK

Query:  RKEDSPGGTSKNSEVNVLSDVKPKTP--------------------------RTFTPLGITLA-------------------------APWKSFKSMVYS
            S   T++ SEV+V++ + P  P                          RTFTPL + L                            +   K   Y 
Subjt:  RKEDSPGGTSKNSEVNVLSDVKPKTP--------------------------RTFTPLGITLA-------------------------APWKSFKSMVYS

Query:  RLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPA
        +   H       LRH+I  L++K  I PP  ++PNVTTNPLP H   PPP  IN I+   +S+DPS+ ITP+
Subjt:  RLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTAACCAGAAGAGGGCTGGAAATGACTCGCCAGCGACCAAATGAAACATTCACGGATTTCCTGGCCCGTTGGCAGGCCAAAGCTGCCCAAGTGATCGATCTCCC
CCCAGAAAAGGAAAAAGTTCGGATAATGATCAATAACATGAGTCAAAGAGGCAGATCCAAAAGGAAAGAAGATAGCCCTGGGGGAACAAGCAAGAACAGTGAAGTCAATG
TCTTGTCTGACGTAAAGCCAAAGACACCCAGGACTTTCACTCCGTTAGGCATAACTCTCGCCGCGCCTTGGAAAAGCTTCAAAAGCATGGTGTACTCACGCCTCTTCCCC
CATCTCCGCCACCAGATCCTCTTCCTCCTAGAGAAAATTGAGCCACCAAGGGCAAACCGCCCCAATGTCACTACCAATCCCCTCCCCACTCATGCTGTACCTCCTCCTGC
CAATATAAACATGATCGAGCCGACATTTTCGAGTTGGGATCCGTCTCTCCTTATCACGCCAGCCGGAGAAAAGGGAGAAACGGATGGTAGAGACATGATTGGAATCCGGG
AGACGAGATTGAGCCCCCACCTCGAGTTCACATGCTCCGGTGGGATGATTTCTACGACAATCTCCCAACCCCTGAACAACCCCTCCAATTACTCCCGGAAAGCCCAGAAA
GTGAAACATTTATCCTTTACCCTCGCTCGAATTCCTCAACCCTTTGATGAAAGCCCTAGTTGCTCGGACCCTACAGACCTAAAACCCCTCCCCGCATCTTTGTGGATGGA
CTCCGACGAACTGGATCAATACGGCACCAATGATGATATGGATTTTGTCAACAATGAGGAGGCCCAACATATGGCATCTAAGAGCCACCGTGATCCTGTCCTTAGAATGC
GGGGCCAAACACATGTGTCATTGGACACTTCACCATCTCCTCCCGTCAAAATAATTTTCCACATCCGGATGGCAAAGACTATCACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTAACCAGAAGAGGGCTGGAAATGACTCGCCAGCGACCAAATGAAACATTCACGGATTTCCTGGCCCGTTGGCAGGCCAAAGCTGCCCAAGTGATCGATCTCCC
CCCAGAAAAGGAAAAAGTTCGGATAATGATCAATAACATGAGTCAAAGAGGCAGATCCAAAAGGAAAGAAGATAGCCCTGGGGGAACAAGCAAGAACAGTGAAGTCAATG
TCTTGTCTGACGTAAAGCCAAAGACACCCAGGACTTTCACTCCGTTAGGCATAACTCTCGCCGCGCCTTGGAAAAGCTTCAAAAGCATGGTGTACTCACGCCTCTTCCCC
CATCTCCGCCACCAGATCCTCTTCCTCCTAGAGAAAATTGAGCCACCAAGGGCAAACCGCCCCAATGTCACTACCAATCCCCTCCCCACTCATGCTGTACCTCCTCCTGC
CAATATAAACATGATCGAGCCGACATTTTCGAGTTGGGATCCGTCTCTCCTTATCACGCCAGCCGGAGAAAAGGGAGAAACGGATGGTAGAGACATGATTGGAATCCGGG
AGACGAGATTGAGCCCCCACCTCGAGTTCACATGCTCCGGTGGGATGATTTCTACGACAATCTCCCAACCCCTGAACAACCCCTCCAATTACTCCCGGAAAGCCCAGAAA
GTGAAACATTTATCCTTTACCCTCGCTCGAATTCCTCAACCCTTTGATGAAAGCCCTAGTTGCTCGGACCCTACAGACCTAAAACCCCTCCCCGCATCTTTGTGGATGGA
CTCCGACGAACTGGATCAATACGGCACCAATGATGATATGGATTTTGTCAACAATGAGGAGGCCCAACATATGGCATCTAAGAGCCACCGTGATCCTGTCCTTAGAATGC
GGGGCCAAACACATGTGTCATTGGACACTTCACCATCTCCTCCCGTCAAAATAATTTTCCACATCCGGATGGCAAAGACTATCACTTGA
Protein sequenceShow/hide protein sequence
MKVTRRGLEMTRQRPNETFTDFLARWQAKAAQVIDLPPEKEKVRIMINNMSQRGRSKRKEDSPGGTSKNSEVNVLSDVKPKTPRTFTPLGITLAAPWKSFKSMVYSRLFP
HLRHQILFLLEKIEPPRANRPNVTTNPLPTHAVPPPANINMIEPTFSSWDPSLLITPAGEKGETDGRDMIGIRETRLSPHLEFTCSGGMISTTISQPLNNPSNYSRKAQK
VKHLSFTLARIPQPFDESPSCSDPTDLKPLPASLWMDSDELDQYGTNDDMDFVNNEEAQHMASKSHRDPVLRMRGQTHVSLDTSPSPPVKIIFHIRMAKTIT