CuGenDBv2

Gene ID	HG10003650
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Photosystem II protein D1
Genome location	Chr08:4873925..4883513
RNA-Seq Expression	HG10003650
Synteny	HG10003650
Gene Ontology terms	GO:0009635 - response to herbicide (biological process) GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor (molecular function) GO:0005506 - iron ion binding (molecular function) GO:0010242 - oxygen evolving activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR043502 - DNA/RNA polymerase superfamily IPR036854 - Photosystem II protein D1/D2 superfamily IPR000484 - Photosynthetic reaction centre, L/M IPR000477 - Reverse transcriptase domain

Homology

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GenBank top hits

e value

%identity

Alignment

AAA74185.1 photosystem II protein D1 [Solanum nigrum]

3.8e-61

94.62

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Query:  LALAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
        L L   CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
Subjt:  LALAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL

Query:  VTSSLIRETTENESANSGYRFGQEEETSHI
        VTSSLIRETTENESAN GYRFGQEEET +I
Subjt:  VTSSLIRETTENESANSGYRFGQEEETSHI

ABL86500.1 photosystem II 32 kDa protein [Ptychanthus striatus]

3.8e-61

94.53

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Query:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
        L   CYMGREWELSFRLGMRPWIA+AYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
Subjt:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT

Query:  SSLIRETTENESANSGYRFGQEEETSHI
        SSLIRETTENESAN+GY+FGQEEETS+I
Subjt:  SSLIRETTENESANSGYRFGQEEETSHI

ADY76022.1 PsbA [Cornus walteri]

2.2e-61

96.09

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Query:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
        L  TCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
Subjt:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT

Query:  SSLIRETTENESANSGYRFGQEEETSHI
        SSLIRETTENESAN GYRFGQEEET +I
Subjt:  SSLIRETTENESANSGYRFGQEEETSHI

AWI71730.1 photosystem II protein D1 [Strempeliopsis strempelioides]

4.9e-61

95.31

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Query:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
        L   CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
Subjt:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT

Query:  SSLIRETTENESANSGYRFGQEEETSHI
        SSLIRETTENESAN+GYRFGQEEET +I
Subjt:  SSLIRETTENESANSGYRFGQEEETSHI

VDD65338.1 unnamed protein product, partial [Brassica oleracea]

2.2e-61

93.89

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Query:  FLALAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGS
        F  L   CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGS
Subjt:  FLALAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGS

Query:  LVTSSLIRETTENESANSGYRFGQEEETSHI
        LVTSSLIRETTENESAN GYRFGQEEET +I
Subjt:  LVTSSLIRETTENESANSGYRFGQEEETSHI

TrEMBL top hits

e value

%identity

Alignment

A0A3P6GG24 Photosystem II protein D1 (Fragment)

1.1e-61

93.89

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Query:  FLALAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGS
        F  L   CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGS
Subjt:  FLALAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGS

Query:  LVTSSLIRETTENESANSGYRFGQEEETSHI
        LVTSSLIRETTENESAN GYRFGQEEET +I
Subjt:  LVTSSLIRETTENESANSGYRFGQEEETSHI

A4GH40 Photosystem II protein D1

1.8e-61

94.53

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Query:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
        L   CYMGREWELSFRLGMRPWIA+AYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
Subjt:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT

Query:  SSLIRETTENESANSGYRFGQEEETSHI
        SSLIRETTENESAN+GY+FGQEEETS+I
Subjt:  SSLIRETTENESANSGYRFGQEEETSHI

F1KBV4 Photosystem II protein D1

1.1e-61

96.09

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Query:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
        L  TCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
Subjt:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT

Query:  SSLIRETTENESANSGYRFGQEEETSHI
        SSLIRETTENESAN GYRFGQEEET +I
Subjt:  SSLIRETTENESANSGYRFGQEEETSHI

M8C7Y2 32 kDa thylakoid membrane protein

4.8e-62

81.41

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Query:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
        L   CYMGREW LSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
Subjt:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT

Query:  SSLIRETTENESANSGYRFGQEEETSHIRRKSAIVIREFRVEGLSLNGSKFSSMYR
        SSLIRETTENESAN GY+FGQEEET +I     I    F + G + N S   S  R
Subjt:  SSLIRETTENESANSGYRFGQEEETSHIRRKSAIVIREFRVEGLSLNGSKFSSMYR

Q33128 Photosystem II protein D1

1.8e-61

94.62

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Query:  LALAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
        L L   CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
Subjt:  LALAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL

Query:  VTSSLIRETTENESANSGYRFGQEEETSHI
        VTSSLIRETTENESAN GYRFGQEEET +I
Subjt:  VTSSLIRETTENESANSGYRFGQEEETSHI

SwissProt top hits

e value

%identity

Alignment

A0A315 Photosystem II protein D1

8.4e-64

95.31

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Query:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
        L   CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
Subjt:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT

Query:  SSLIRETTENESANSGYRFGQEEETSHI
        SSLIRETTENESAN+GYRFGQEEET +I
Subjt:  SSLIRETTENESANSGYRFGQEEETSHI

A6MMA2 Photosystem II protein D1

8.4e-64

95.31

Show/hide

Query:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
        L   CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
Subjt:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT

Query:  SSLIRETTENESANSGYRFGQEEETSHI
        SSLIRETTENESAN+GYRFGQEEET +I
Subjt:  SSLIRETTENESANSGYRFGQEEETSHI

A6MMS4 Photosystem II protein D1

8.4e-64

95.31

Show/hide

Query:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
        L   CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
Subjt:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT

Query:  SSLIRETTENESANSGYRFGQEEETSHI
        SSLIRETTENESAN+GYRFGQEEET +I
Subjt:  SSLIRETTENESANSGYRFGQEEETSHI

Q09MJ8 Photosystem II protein D1

8.4e-64

95.31

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Query:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
        L   CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
Subjt:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT

Query:  SSLIRETTENESANSGYRFGQEEETSHI
        SSLIRETTENESAN+GYRFGQEEET +I
Subjt:  SSLIRETTENESANSGYRFGQEEETSHI

Q7YJY8 Photosystem II protein D1

8.4e-64

95.31

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Query:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
        L   CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
Subjt:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT

Query:  SSLIRETTENESANSGYRFGQEEETSHI
        SSLIRETTENESAN+GYRFGQEEET +I
Subjt:  SSLIRETTENESANSGYRFGQEEETSHI

Arabidopsis top hits

e value

%identity

Alignment

ATCG00020.1 photosystem II reaction center protein A

7.8e-65

95.31

Show/hide

Query:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
        L   CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT
Subjt:  LAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVT

Query:  SSLIRETTENESANSGYRFGQEEETSHI
        SSLIRETTENESAN GYRFGQEEET +I
Subjt:  SSLIRETTENESANSGYRFGQEEETSHI

ATCG00270.1 photosystem II reaction center protein D

4.5e-20

33.14

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Query:  GIESFLAL----AFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGS
        G+ +F+AL    A   +M R++EL+  + +RP+ A+A+S P+A   +VFLIYP+GQ  +      G++  F F++ FQ  HN  ++PFHM+GVAGV G +
Subjt:  GIESFLAL----AFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGS

Query:  LFSAMHGSLVTSSLIRETTENESANSGYRFG--QEEETSHIRRKSAIVIREF--RVEGLSLNGSKFSSMYRSWIP
        L  A+HG+ V ++L     + + AN+   F   Q EET      S +    F  ++ G++ +  ++   +  ++P
Subjt:  LFSAMHGSLVTSSLIRETTENESANSGYRFG--QEEETSHIRRKSAIVIREF--RVEGLSLNGSKFSSMYRSWIP

Sequences

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CDS sequence

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ATGGAGATTAAAGGAGATAGAAGAAGAATCACATGTATGCGTGCTAAGCGTGGGCAAGCGAGGACAAGCAGAAGCTATGGAATAGAGTCTTTCCTTGCTTTGGCATTCAC
ATGTTACATGGGTCGAGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTGCTGTTTTCTTGATCT
ACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTC
CACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAA
TTCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTCTCATATCAGACGAAAGTCGGCCATAGTGATCCGGGAGTTCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGT
TTTCCTCGATGTACCGCTCATGGATTCCCAAACCAAACAAACCTGGGGAGCTGCGAGCCATTACCCAGCCCAACAAGGCTGATACCATTGGGTTTAGGAAAGGTCGAGGT
CCTATTACTTTCTTCCTTGAAGTCCAGCGCTGGGGTCTGGTTGATAAACTCATTAAGTCAGATATTGTAAAGTGTTTTGATAACATAGATCATGGGCTCAACATCTCAGT
TCTTCAATCTTATTTAGGTGAGGAGAACCGTGCCTTCCTTGATCTTATTTTAGTGTTCTTACGAACAGTAATAATCGACAAAACAGCTCAAAATTTTGCAAACTACACGA
AAGGCATACCGCTGCTCCCTCTCCTTTACAGTCGAGCATATTCAATCCTCTCCCCCGTGCTAATGAACATCTTTTTGCACCAACTCGATATGAAAATCAATTCCTTTATG
CAAATCGAAGAGGGCGTAGGCTACGTTCGGTATGCTGATGACATGATTTTTGCTATCAAAAGGGGAGGAAATTCTGAGGCAGTATATTACAGGGTTAAACAGCTCCTCAA
AAAGACCCTGGAAAACCTAAAACAGGCCGAAACCTCTATAGAACTAATCCGAGGAAGACCCCGCAAAATCCTAGTTTGA

mRNA sequence

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Protein sequence

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MEIKGDRRRITCMRAKRGQARTSRSYGIESFLALAFTCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPF
HMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANSGYRFGQEEETSHIRRKSAIVIREFRVEGLSLNGSKFSSMYRSWIPKPNKPGELRAITQPNKADTIGFRKGRG
PITFFLEVQRWGLVDKLIKSDIVKCFDNIDHGLNISVLQSYLGEENRAFLDLILVFLRTVIIDKTAQNFANYTKGIPLLPLLYSRAYSILSPVLMNIFLHQLDMKINSFM
QIEEGVGYVRYADDMIFAIKRGGNSEAVYYRVKQLLKKTLENLKQAETSIELIRGRPRKILV

HG10003650 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome