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HG10003669 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003669
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionrRNA biogenesis protein RRP5
Genome locationChr08:5317396..5323100
RNA-Seq ExpressionHG10003669
SyntenyHG10003669
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008442208.1 PREDICTED: LOW QUALITY PROTEIN: rRNA biogenesis protein RRP5 [Cucumis melo]7.0e-3254.32Show/hide
Query:  FRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK------------------------------
        F+DMDDDFNNVEP+QPLRLA++RA VP LEVTLDDIDETDMVTL+ +NK+L SG +S+EKNDRREKKKAK                              
Subjt:  FRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK------------------------------

Query:  ---------------------------VERALRTINIREENEKLNGWLAYFNLENEYENPKE
                                    ERALRTINIREENEKLN WLAYFNLENEY NPKE
Subjt:  ---------------------------VERALRTINIREENEKLNGWLAYFNLENEYENPKE

XP_011653922.2 rRNA biogenesis protein RRP5 [Cucumis sativus]7.0e-3253.7Show/hide
Query:  FRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK------------------------------
        F+DMDDDF+N+EP+QPLRLA++RA VP LEVTLDDIDETDMVTL+ +NK+L SGT+S+EKNDRREKKKAK                              
Subjt:  FRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK------------------------------

Query:  ---------------------------VERALRTINIREENEKLNGWLAYFNLENEYENPKE
                                    ERALRTINIREENEKLN WLAYFNLENEY NPKE
Subjt:  ---------------------------VERALRTINIREENEKLNGWLAYFNLENEYENPKE

XP_038881066.1 rRNA biogenesis protein RRP5 isoform X1 [Benincasa hispida]2.0e-3154.27Show/hide
Query:  FRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK------------------------------
        F+DM DDF+N+EP+QPLRLA++RAFVPPLEVTLDDIDETD+VTLR +NK+L SGT+SREKNDRREKKKAK                              
Subjt:  FRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK------------------------------

Query:  -----------------------------VERALRTINIREENEKLNGWLAYFNLENEYENPKE
                                      ERALRTINIREENEKLN WLAYFNLENEY NPKE
Subjt:  -----------------------------VERALRTINIREENEKLNGWLAYFNLENEYENPKE

XP_038881067.1 rRNA biogenesis protein RRP5 isoform X2 [Benincasa hispida]2.0e-3154.27Show/hide
Query:  FRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK------------------------------
        F+DM DDF+N+EP+QPLRLA++RAFVPPLEVTLDDIDETD+VTLR +NK+L SGT+SREKNDRREKKKAK                              
Subjt:  FRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK------------------------------

Query:  -----------------------------VERALRTINIREENEKLNGWLAYFNLENEYENPKE
                                      ERALRTINIREENEKLN WLAYFNLENEY NPKE
Subjt:  -----------------------------VERALRTINIREENEKLNGWLAYFNLENEYENPKE

XP_038881068.1 rRNA biogenesis protein RRP5 isoform X3 [Benincasa hispida]2.0e-3154.27Show/hide
Query:  FRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK------------------------------
        F+DM DDF+N+EP+QPLRLA++RAFVPPLEVTLDDIDETD+VTLR +NK+L SGT+SREKNDRREKKKAK                              
Subjt:  FRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK------------------------------

Query:  -----------------------------VERALRTINIREENEKLNGWLAYFNLENEYENPKE
                                      ERALRTINIREENEKLN WLAYFNLENEY NPKE
Subjt:  -----------------------------VERALRTINIREENEKLNGWLAYFNLENEYENPKE

TrEMBL top hitse value%identityAlignment
A0A0A0L3Z5 Uncharacterized protein3.4e-3253.7Show/hide
Query:  FRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK------------------------------
        F+DMDDDF+N+EP+QPLRLA++RA VP LEVTLDDIDETDMVTL+ +NK+L SGT+S+EKNDRREKKKAK                              
Subjt:  FRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK------------------------------

Query:  ---------------------------VERALRTINIREENEKLNGWLAYFNLENEYENPKE
                                    ERALRTINIREENEKLN WLAYFNLENEY NPKE
Subjt:  ---------------------------VERALRTINIREENEKLNGWLAYFNLENEYENPKE

A0A1S3B5U4 LOW QUALITY PROTEIN: rRNA biogenesis protein RRP53.4e-3254.32Show/hide
Query:  FRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK------------------------------
        F+DMDDDFNNVEP+QPLRLA++RA VP LEVTLDDIDETDMVTL+ +NK+L SG +S+EKNDRREKKKAK                              
Subjt:  FRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK------------------------------

Query:  ---------------------------VERALRTINIREENEKLNGWLAYFNLENEYENPKE
                                    ERALRTINIREENEKLN WLAYFNLENEY NPKE
Subjt:  ---------------------------VERALRTINIREENEKLNGWLAYFNLENEYENPKE

A0A6J1DPI8 rRNA biogenesis protein RRP5 isoform X14.9e-2346.01Show/hide
Query:  MFRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK-----------------------------
        MF++MD + ++VEP+QPL LA++RAFVPPLEV LDD+DETDM  LR +NK+L S  +S  + DRREKKKAK                             
Subjt:  MFRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK-----------------------------

Query:  ------------------------------VERALRTINIREENEKLNGWLAYFNLENEYENP
                                       ERALRTINIREENEKLN WLAYFNLENEY NP
Subjt:  ------------------------------VERALRTINIREENEKLNGWLAYFNLENEYENP

A0A6J1EE30 rRNA biogenesis protein RRP56.6e-2850Show/hide
Query:  FRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK------------------------------
        F +MDD+F+N+EP+ PLRLA +RAFVPPLEVTLDDIDETDM  L+ +NK+L SGT S+EKNDRREKKKAK                              
Subjt:  FRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK------------------------------

Query:  -----------------------------VERALRTINIREENEKLNGWLAYFNLENEYENPKE
                                      ERALRTINIREENEKLN WLAYFNLE+EY NP E
Subjt:  -----------------------------VERALRTINIREENEKLNGWLAYFNLENEYENPKE

A0A6J1HM63 rRNA biogenesis protein RRP53.5e-2950.61Show/hide
Query:  FRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK------------------------------
        F +MDD+F+N+EP+QPLRLA++RAFVPPLEVTLDDIDETDM  L+ +NK+L SGT S+EKNDRREKKKAK                              
Subjt:  FRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK------------------------------

Query:  -----------------------------VERALRTINIREENEKLNGWLAYFNLENEYENPKE
                                      ERALRTINIREENEKLN WLAYFNLE+EY NP E
Subjt:  -----------------------------VERALRTINIREENEKLNGWLAYFNLENEYENPKE

SwissProt top hitse value%identityAlignment
A7MB10 Protein RRP5 homolog6.4e-0463.89Show/hide
Query:  EKKKAKVERALRTINIREENEKLNGWLAYFNLENEY
        EK +A  ERAL+TI+ REE EKLN W+A  NLEN Y
Subjt:  EKKKAKVERALRTINIREENEKLNGWLAYFNLENEY

F4J8K6 rRNA biogenesis protein RRP58.4e-1236.84Show/hide
Query:  LRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK----------------------------------------------
        L   ++RA +PPLEV LDDI+ETD  + +   K L  G N  EK+ RREK+K K                                              
Subjt:  LRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK----------------------------------------------

Query:  -------------VERALRTINIREENEKLNGWLAYFNLENEYENPKEVIVR
                      ERALRTINIREE EKLN W+AYFNLENE+ NP E  V+
Subjt:  -------------VERALRTINIREENEKLNGWLAYFNLENEYENPKEVIVR

Q14690 Protein RRP5 homolog6.4e-0463.89Show/hide
Query:  EKKKAKVERALRTINIREENEKLNGWLAYFNLENEY
        EK +A  ERAL+TI+ REE EKLN W+A  NLEN Y
Subjt:  EKKKAKVERALRTINIREENEKLNGWLAYFNLENEY

Q6NS46 Protein RRP5 homolog6.4e-0463.89Show/hide
Query:  EKKKAKVERALRTINIREENEKLNGWLAYFNLENEY
        EK +A  ERAL+TI+ REE EKLN W+A  NLEN Y
Subjt:  EKKKAKVERALRTINIREENEKLNGWLAYFNLENEY

Arabidopsis top hitse value%identityAlignment
AT3G11964.1 RNA binding;RNA binding5.9e-1336.84Show/hide
Query:  LRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK----------------------------------------------
        L   ++RA +PPLEV LDDI+ETD  + +   K L  G N  EK+ RREK+K K                                              
Subjt:  LRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAK----------------------------------------------

Query:  -------------VERALRTINIREENEKLNGWLAYFNLENEYENPKEVIVR
                      ERALRTINIREE EKLN W+AYFNLENE+ NP E  V+
Subjt:  -------------VERALRTINIREENEKLNGWLAYFNLENEYENPKEVIVR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTAGGGATATGGATGATGACTTCAACAATGTTGAACCTAAACAACCACTTAGGCTAGCAAAAGCAAGGGCTTTTGTTCCTCCACTTGAGGTCACTCTTGATGATAT
AGATGAAACTGATATGGTTACTTTACGGTATGATAATAAAAAGCTGAGGAGTGGTACAAACTCTAGGGAAAAGAATGATAGACGAGAGAAGAAAAAGGCTAAAGTAGAAA
GGGCTTTGAGGACAATCAATATTCGGGAAGAGAATGAAAAGCTCAATGGCTGGTTGGCTTACTTCAATCTTGAAAATGAATATGAAAATCCTAAAGAGGTAATAGTAAGA
AATAACAGCTTGTTGATTAGACTGATAACCCAAGTGTTTGATGGCCTTGAAAAGCTCAATGGCTGGGTGTGCACGACTCGGTTTGGTCTGGCTTTGAGCAAAACCAATGA
CCAAACCGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTAGGGATATGGATGATGACTTCAACAATGTTGAACCTAAACAACCACTTAGGCTAGCAAAAGCAAGGGCTTTTGTTCCTCCACTTGAGGTCACTCTTGATGATAT
AGATGAAACTGATATGGTTACTTTACGGTATGATAATAAAAAGCTGAGGAGTGGTACAAACTCTAGGGAAAAGAATGATAGACGAGAGAAGAAAAAGGCTAAAGTAGAAA
GGGCTTTGAGGACAATCAATATTCGGGAAGAGAATGAAAAGCTCAATGGCTGGTTGGCTTACTTCAATCTTGAAAATGAATATGAAAATCCTAAAGAGGTAATAGTAAGA
AATAACAGCTTGTTGATTAGACTGATAACCCAAGTGTTTGATGGCCTTGAAAAGCTCAATGGCTGGGTGTGCACGACTCGGTTTGGTCTGGCTTTGAGCAAAACCAATGA
CCAAACCGAATAG
Protein sequenceShow/hide protein sequence
MFRDMDDDFNNVEPKQPLRLAKARAFVPPLEVTLDDIDETDMVTLRYDNKKLRSGTNSREKNDRREKKKAKVERALRTINIREENEKLNGWLAYFNLENEYENPKEVIVR
NNSLLIRLITQVFDGLEKLNGWVCTTRFGLALSKTNDQTE