; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10003670 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003670
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSWIM-type domain-containing protein
Genome locationChr08:5353801..5354676
RNA-Seq ExpressionHG10003670
SyntenyHG10003670
Gene Ontology termsNA
InterPro domainsIPR004332 - Transposase, MuDR, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3957745.1 hypothetical protein CMV_017272 [Castanea mollissima]3.7e-2937.35Show/hide
Query:  INPYVEHVGNDDVNTMHIHDDEVRLGNDIYFSDSEEDLNDDLDLVEQE-----NHSSDCEEEDLNDKLEPAKGKEIEVIEEICEKNDLLGHGDEVDNKED
        I  YVEH     V+  +I DD   +G+DI +SD+ +D +   D  ++      + S   +E+D N     A G   +++  + + ND     +E+     
Subjt:  INPYVEHVGNDDVNTMHIHDDEVRLGNDIYFSDSEEDLNDDLDLVEQE-----NHSSDCEEEDLNDKLEPAKGKEIEVIEEICEKNDLLGHGDEVDNKED

Query:  KGCNLDSIDHSDSDFKGGSVKLPSFKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICSKPCKWVAYVTKMKGEETFQLRT
               +   D D        P F    N    +F  GMLF S ++FK VVT YA+HGGW IR+ K D+ RVRAIC   CKW+AYV KM+ + TFQ+RT
Subjt:  KGCNLDSIDHSDSDFKGGSVKLPSFKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICSKPCKWVAYVTKMKGEETFQLRT

Query:  LIDEHTCALSFQNLRVTTKLLANTLVNRVKEQPNIKVSTIQENIQQKFVVKISRSKA
            HTC  +F+N R T+K L  TLV+ + ++ N   STI +  Q+K+VV ISRSKA
Subjt:  LIDEHTCALSFQNLRVTTKLLANTLVNRVKEQPNIKVSTIQENIQQKFVVKISRSKA

KAF7138490.1 hypothetical protein RHSIM_Rhsim07G0255600 [Rhododendron simsii]1.4e-2836.26Show/hide
Query:  LTRKASINPYVEHVGNDDVNTMHIH-DDEVRLGNDIYF-SDSEEDLND-DLDLVEQENHSSDCEEEDLNDKLEPAKGKEIEVIEEICEKNDLLGHGDEVD
        L   A++ P+      +    + IH D+EV  G ++Y  SD++E L D D  L +  ++     ++ L DK      KE E  E+  + N+L     E+D
Subjt:  LTRKASINPYVEHVGNDDVNTMHIH-DDEVRLGNDIYF-SDSEEDLND-DLDLVEQENHSSDCEEEDLNDKLEPAKGKEIEVIEEICEKNDLLGHGDEVD

Query:  NKEDKGCNLDSIDHSDSDF-KGGSVKLPSFKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICSKPCKWVAYVTKMKGEET
        NK +        D + +DF     ++  +FK       + F  GMLFSS  +FK  ++ YA+HGG+ I++ K DR+RVRA+C   C +    +K+  +ET
Subjt:  NKEDKGCNLDSIDHSDSDF-KGGSVKLPSFKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICSKPCKWVAYVTKMKGEET

Query:  FQLRTLIDEHTCALSFQNLRVTTKLLANTLVNRVKEQPNIKVSTIQENIQQKFVVKISRSKA
        FQL+T   EH C  +++N+R+++K LA  LV +VK+QPN+++S IQE +  KFVV+ISRSKA
Subjt:  FQLRTLIDEHTCALSFQNLRVTTKLLANTLVNRVKEQPNIKVSTIQENIQQKFVVKISRSKA

KAG5541483.1 hypothetical protein RHGRI_021341 [Rhododendron griersonianum]6.5e-2635.06Show/hide
Query:  GNDIYFSDSE-EDLNDDLDLVEQENHSSDCEEEDLNDKL-------EPAKGKEIEVIEEICEKNDLLGHGDEVDN---KEDKGCNLD--------SIDHS
        G+ +Y++ S+ +D   D+D+  +E+   D +++DL D+        EP  G + +        + L G   E +N    ++KG   D         +  S
Subjt:  GNDIYFSDSE-EDLNDDLDLVEQENHSSDCEEEDLNDKL-------EPAKGKEIEVIEEICEKNDLLGHGDEVDN---KEDKGCNLD--------SIDHS

Query:  DSDFKGGSVKLP---SFKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICSK--PCKWVAYVTKMKGEETFQLRTLIDEHT
        +S+ +    ++P    ++ V     I F+ GM+F+S  +FK  VT YA+ GG+ I+++K D+ RVRAIC K   C +   V+K+  + TFQ++T + EH 
Subjt:  DSDFKGGSVKLP---SFKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICSK--PCKWVAYVTKMKGEETFQLRTLIDEHT

Query:  CALSFQNLRVTTKLLANTLVNRVKEQPNIKVSTIQENIQQKFVVKISRSKA
        C  S++N+R+ +K L+N L+N+VK+QPNIK+S IQE +Q+K+VV ISRSKA
Subjt:  CALSFQNLRVTTKLLANTLVNRVKEQPNIKVSTIQENIQQKFVVKISRSKA

XP_022153708.1 uncharacterized protein LOC111021158 [Momordica charantia]1.0e-3138.52Show/hide
Query:  MELASLGVLTRKASINPYVEHVGNDDVNTMHIHDDEVRLGNDI----YFSDSEEDLNDDLDLVEQENHSSDCEEEDLNDKLEPAKGKEIEVIEEICEKND
        MELASL  L+       YVEH            D+ + L ND     Y S  E +  DD DL+       D E          +K  EI  I++  E ND
Subjt:  MELASLGVLTRKASINPYVEHVGNDDVNTMHIHDDEVRLGNDI----YFSDSEEDLNDDLDLVEQENHSSDCEEEDLNDKLEPAKGKEIEVIEEICEKND

Query:  LLGHGDEVDNKEDKGCNLDSIDHSDSDFKGGSVKLPSFKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICSKPCKWVAYV
            G ++D+ E     L   D SDS+     +K P ++      +  FE+GM F+S  EFK VV  YA+ GGW IR+ K D+TRVRA C   CKW+AYV
Subjt:  LLGHGDEVDNKEDKGCNLDSIDHSDSDFKGGSVKLPSFKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICSKPCKWVAYV

Query:  TKMKGEETFQLRTLIDEHTCALSFQNLRVTTKLLANTLVNRVKEQPNIKVSTIQENIQQKFVVKISRSKA
         K++GE T+QL+T + EH+C+ SF N  +T++ L   +VN VKEQP+I++  IQE +Q+K++ +I++ KA
Subjt:  TKMKGEETFQLRTLIDEHTCALSFQNLRVTTKLLANTLVNRVKEQPNIKVSTIQENIQQKFVVKISRSKA

XP_023896782.1 uncharacterized protein LOC112008678 [Quercus suber]8.2e-2942.22Show/hide
Query:  EEICEKNDLLGHGDE-VDNKEDKGCNLDSIDHSDSDFKGGSVKLPSFKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICS
        EE+    +    GDE VD+ + +G       H   D      K P FK V+N   + FE  MLF S  +FK  +T YA++GGW +++ K D+ RVRA C 
Subjt:  EEICEKNDLLGHGDE-VDNKEDKGCNLDSIDHSDSDFKGGSVKLPSFKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICS

Query:  KPCKWVAYVTKMKGEETFQLRTLIDEHTCALSFQNLRVTTKLLANTLVNRVKEQPNIKVSTIQENIQQKFVVKISRSKAT
         PCK+ AY+ K+  E ++QL+TL  EHTC  S++N R TTK LA  L+ +V+ QPNIK+  IQE + +K+VV I+  KA+
Subjt:  KPCKWVAYVTKMKGEETFQLRTLIDEHTCALSFQNLRVTTKLLANTLVNRVKEQPNIKVSTIQENIQQKFVVKISRSKAT

TrEMBL top hitse value%identityAlignment
A0A2N9EMB4 SWIM-type domain-containing protein3.9e-3244.64Show/hide
Query:  FSDSEEDLNDD-----------LDLVEQENHSSDCEEEDLNDKLEPAKGKEIEVIEEICEKNDLLGHGDEVDNKEDKGCNLDSIDHSDSDFKGGSVKLPS
        FSDSEE  +DD             LV   +  SD   EDL D L   +G     IE+   K   L   DE    E+    L S+D  D        + P 
Subjt:  FSDSEEDLNDD-----------LDLVEQENHSSDCEEEDLNDKLEPAKGKEIEVIEEICEKNDLLGHGDEVDNKEDKGCNLDSIDHSDSDFKGGSVKLPS

Query:  FKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICSKPCKWVAYVTKMKGEETFQLRTLIDEHTCALSFQNLRVTTKLLANT
        +K       I FE+GM F+S  EFK  VT YA+HGG  IR+ K D+ RVRA+C K CKWVAY  KM GE T QLRT ++EHTC+ S+ N R T+K L   
Subjt:  FKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICSKPCKWVAYVTKMKGEETFQLRTLIDEHTCALSFQNLRVTTKLLANT

Query:  LVNRVKEQPNIKVSTIQENIQQKFVVKISRSKA
        L NR+ EQP++  STIQE + +KFVV ISRSKA
Subjt:  LVNRVKEQPNIKVSTIQENIQQKFVVKISRSKA

A0A2N9EQ17 CCHC-type domain-containing protein3.9e-3239.2Show/hide
Query:  DEVRLGNDIY---FSDSEEDLNDDLDLVEQENHSSDCEE---------------EDLNDKLEPAKGKEIEVIEEICEKNDLLGHGDEVDNKEDKGCNLDS
        +E   GN++      DS E+ +D  +  + + HS+   E               E+L D L   +G     IE+   K  L        + E+   + + 
Subjt:  DEVRLGNDIY---FSDSEEDLNDDLDLVEQENHSSDCEE---------------EDLNDKLEPAKGKEIEVIEEICEKNDLLGHGDEVDNKEDKGCNLDS

Query:  IDHSDSDFKGGSVKLPSFKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICSKPCKWVAYVTKMKGEETFQLRTLIDEHTC
        +   D D +    + P +K       I FE+GM F+S +EFK  VT YA+HGG  IR+ K D+ RVRA+C K CKWVAY  KM GE T QLRTL++EHTC
Subjt:  IDHSDSDFKGGSVKLPSFKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICSKPCKWVAYVTKMKGEETFQLRTLIDEHTC

Query:  ALSFQNLRVTTKLLANTLVNRVKEQPNIKVSTIQENIQQKFVVKISRSKA
        + S+ N R T+K L   L NR+ EQP++  STIQE + +KFVV ISRSKA
Subjt:  ALSFQNLRVTTKLLANTLVNRVKEQPNIKVSTIQENIQQKFVVKISRSKA

A0A2N9ES33 Uncharacterized protein1.3e-3239.18Show/hide
Query:  DDEVRLGNDIYFSDSEEDLNDDLDLVEQENHSSDCEEEDLNDKLEPAKGKEI---EVIEEICEKNDLL--GHGDEVDNKEDKGCNLDSIDHSDSDFKGGS
        DDE+    + Y SD+    N D D  + EN  +D  ++D  D +E  +  E+    V++   E  DL   G G      E  G N++   ++D +     
Subjt:  DDEVRLGNDIYFSDSEEDLNDDLDLVEQENHSSDCEEEDLNDKLEPAKGKEI---EVIEEICEKNDLL--GHGDEVDNKEDKGCNLDSIDHSDSDFKGGS

Query:  VKL-------PSFKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICSKPCKWVAYVTKMKGEETFQLRTLIDEHTCALSFQ
         ++       P F+ VA   +I FE+GMLF+S ++FK  +T YA+ GGW IR+ K D+ RVRA+C + CK+VAY+ K+  E TFQL+TL  EH+C+  F+
Subjt:  VKL-------PSFKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICSKPCKWVAYVTKMKGEETFQLRTLIDEHTCALSFQ

Query:  NLRVTTKLLANTLVNRVKEQPNIKVSTIQENIQQKFVVKISRSKA
        N R+T K LA  LV RVK+QP+IK+ +IQ+ + +K+V  IS+SKA
Subjt:  NLRVTTKLLANTLVNRVKEQPNIKVSTIQENIQQKFVVKISRSKA

A0A2N9FLE9 Uncharacterized protein2.9e-3243.88Show/hide
Query:  NDIYFSDSEEDLNDD-----------LDLVEQENHSSDCEEEDLNDKLEPAKGKEIEVIEEICEKNDLLGHGDEVDNKEDKGCNLDSIDHSDSDFKGGSV
        + + FSDSEE  +DD             LV   +  SD   EDL D L   +G     IE+   K   L   DE    E+    L S+D  D        
Subjt:  NDIYFSDSEEDLNDD-----------LDLVEQENHSSDCEEEDLNDKLEPAKGKEIEVIEEICEKNDLLGHGDEVDNKEDKGCNLDSIDHSDSDFKGGSV

Query:  KLPSFKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICSKPCKWVAYVTKMKGEETFQLRTLIDEHTCALSFQNLRVTTKL
        + P +K       I FE+GM F+S  EFK  VT YA+HGG  IR+ K D+ RVRA+C K CKWVAY  KM GE T QLRT ++EHTC+ S+ N R T+K 
Subjt:  KLPSFKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICSKPCKWVAYVTKMKGEETFQLRTLIDEHTCALSFQNLRVTTKL

Query:  LANTLVNRVKEQPNIKVSTIQENIQQKFVVKISRSKA
        L   L NR+ EQP++  STIQE + +KFVV ISRSKA
Subjt:  LANTLVNRVKEQPNIKVSTIQENIQQKFVVKISRSKA

A0A2N9HUS0 Uncharacterized protein2.9e-3243.88Show/hide
Query:  NDIYFSDSEEDLNDD-----------LDLVEQENHSSDCEEEDLNDKLEPAKGKEIEVIEEICEKNDLLGHGDEVDNKEDKGCNLDSIDHSDSDFKGGSV
        + + FSDSEE  +DD             LV   +  SD   EDL D L   +G     IE+   K   L   DE    E+    L S+D  D        
Subjt:  NDIYFSDSEEDLNDD-----------LDLVEQENHSSDCEEEDLNDKLEPAKGKEIEVIEEICEKNDLLGHGDEVDNKEDKGCNLDSIDHSDSDFKGGSV

Query:  KLPSFKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICSKPCKWVAYVTKMKGEETFQLRTLIDEHTCALSFQNLRVTTKL
        + P +K       I FE+GM F+S  EFK  VT YA+HGG  IR+ K D+ RVRA+C K CKWVAY  KM GE T QLRT ++EHTC+ S+ N R T+K 
Subjt:  KLPSFKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICSKPCKWVAYVTKMKGEETFQLRTLIDEHTCALSFQNLRVTTKL

Query:  LANTLVNRVKEQPNIKVSTIQENIQQKFVVKISRSKA
        L   L NR+ EQP++  STIQE + +KFVV ISRSKA
Subjt:  LANTLVNRVKEQPNIKVSTIQENIQQKFVVKISRSKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTGGCTTCTTTAGGTGTATTAACTAGAAAAGCATCTATAAATCCGTATGTAGAGCATGTAGGAAATGACGATGTTAATACAATGCATATACATGATGATGAAGT
TAGACTTGGGAATGATATTTATTTTTCTGATAGCGAAGAGGATTTAAATGATGATTTAGACTTAGTTGAACAAGAAAATCATTCTTCAGATTGTGAGGAGGAGGACTTGA
ATGATAAGTTGGAACCTGCGAAAGGAAAAGAAATAGAAGTTATTGAGGAAATTTGTGAGAAAAATGATTTATTAGGCCATGGTGATGAAGTTGATAACAAGGAAGATAAG
GGGTGTAATTTAGATTCGATTGACCATTCTGACTCAGATTTCAAGGGTGGCAGTGTCAAGCTTCCATCATTTAAAAATGTGGCCAATCTTTATGAAATCCACTTTGAAGT
TGGCATGTTGTTTAGCTCCTTTGATGAATTTAAGAGAGTTGTGACTGCATATGCAATCCATGGAGGATGGTCAATTCGTTATAGCAAGGCAGATAGAACAAGGGTTCGTG
CTATATGCTCAAAACCATGTAAGTGGGTTGCTTATGTGACTAAAATGAAGGGTGAGGAGACATTTCAATTAAGAACTCTAATTGATGAACATACATGTGCCCTGTCCTTC
CAAAACCTTAGGGTAACTACAAAGTTGTTAGCCAACACATTAGTTAATAGAGTCAAAGAGCAACCTAATATAAAGGTGAGCACAATTCAAGAGAATATCCAACAGAAGTT
TGTTGTGAAGATATCAAGGAGTAAGGCCACGCCGAACTGTATGGAAAATTGTGGGATTATTGTGGTGAGCTATTGCGAGGTAACAGCGGTAGTAGTGTTAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTGGCTTCTTTAGGTGTATTAACTAGAAAAGCATCTATAAATCCGTATGTAGAGCATGTAGGAAATGACGATGTTAATACAATGCATATACATGATGATGAAGT
TAGACTTGGGAATGATATTTATTTTTCTGATAGCGAAGAGGATTTAAATGATGATTTAGACTTAGTTGAACAAGAAAATCATTCTTCAGATTGTGAGGAGGAGGACTTGA
ATGATAAGTTGGAACCTGCGAAAGGAAAAGAAATAGAAGTTATTGAGGAAATTTGTGAGAAAAATGATTTATTAGGCCATGGTGATGAAGTTGATAACAAGGAAGATAAG
GGGTGTAATTTAGATTCGATTGACCATTCTGACTCAGATTTCAAGGGTGGCAGTGTCAAGCTTCCATCATTTAAAAATGTGGCCAATCTTTATGAAATCCACTTTGAAGT
TGGCATGTTGTTTAGCTCCTTTGATGAATTTAAGAGAGTTGTGACTGCATATGCAATCCATGGAGGATGGTCAATTCGTTATAGCAAGGCAGATAGAACAAGGGTTCGTG
CTATATGCTCAAAACCATGTAAGTGGGTTGCTTATGTGACTAAAATGAAGGGTGAGGAGACATTTCAATTAAGAACTCTAATTGATGAACATACATGTGCCCTGTCCTTC
CAAAACCTTAGGGTAACTACAAAGTTGTTAGCCAACACATTAGTTAATAGAGTCAAAGAGCAACCTAATATAAAGGTGAGCACAATTCAAGAGAATATCCAACAGAAGTT
TGTTGTGAAGATATCAAGGAGTAAGGCCACGCCGAACTGTATGGAAAATTGTGGGATTATTGTGGTGAGCTATTGCGAGGTAACAGCGGTAGTAGTGTTAAATTGA
Protein sequenceShow/hide protein sequence
MELASLGVLTRKASINPYVEHVGNDDVNTMHIHDDEVRLGNDIYFSDSEEDLNDDLDLVEQENHSSDCEEEDLNDKLEPAKGKEIEVIEEICEKNDLLGHGDEVDNKEDK
GCNLDSIDHSDSDFKGGSVKLPSFKNVANLYEIHFEVGMLFSSFDEFKRVVTAYAIHGGWSIRYSKADRTRVRAICSKPCKWVAYVTKMKGEETFQLRTLIDEHTCALSF
QNLRVTTKLLANTLVNRVKEQPNIKVSTIQENIQQKFVVKISRSKATPNCMENCGIIVVSYCEVTAVVVLN