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HG10003697 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003697
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr08:6304533..6305027
RNA-Seq ExpressionHG10003697
SyntenyHG10003697
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-0537.35Show/hide
Query:  MAEERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQ----KRTEVKDADSGQASPRGAGRGRG
        MA+E+W+P++YEKLP+FC  CG +GH +++C  + D  E   R+G  L + + +      +R EV+   S     RG G G+G
Subjt:  MAEERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQ----KRTEVKDADSGQASPRGAGRGRG

OMO82636.1 reverse transcriptase [Corchorus capsularis]1.8e-0437.97Show/hide
Query:  EERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQKRTEVKDADSGQASPRGAGRGRGRI
        E+RW  I YEKLP+FC  CG LGH  K C     G E E ++GP +   R N  +R E  +  + Q   +     RG +
Subjt:  EERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQKRTEVKDADSGQASPRGAGRGRGRI

PPD84527.1 hypothetical protein GOBAR_DD18536 [Gossypium barbadense]1.0e-0453.66Show/hide
Query:  WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP
        W+P  YEKLP FC GCG LGHSL DC+ +    E   R  P
Subjt:  WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP

TYG50040.1 hypothetical protein ES288_D10G144100v1 [Gossypium darwinii]2.1e-0556.1Show/hide
Query:  WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP
        W+P  YEKLPNFC GCG LGHSL DC  ++   E   R  P
Subjt:  WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP

XP_016732636.1 uncharacterized protein LOC107943395 [Gossypium hirsutum]1.0e-0453.66Show/hide
Query:  WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP
        W+P  YEKLP FC GCG LGH L+DC S+    +I  R  P
Subjt:  WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP

TrEMBL top hitse value%identityAlignment
A0A1R3IJA9 Reverse transcriptase8.6e-0537.97Show/hide
Query:  EERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQKRTEVKDADSGQASPRGAGRGRGRI
        E+RW  I YEKLP+FC  CG LGH  K C     G E E ++GP +   R N  +R E  +  + Q   +     RG +
Subjt:  EERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQKRTEVKDADSGQASPRGAGRGRGRI

A0A1U8N0M2 uncharacterized protein LOC1079433955.0e-0553.66Show/hide
Query:  WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP
        W+P  YEKLP FC GCG LGH L+DC S+    +I  R  P
Subjt:  WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP

A0A5D2AZS3 CCHC-type domain-containing protein1.0e-0556.1Show/hide
Query:  WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP
        W+P  YEKLPNFC GCG LGHSL DC  ++   E   R  P
Subjt:  WLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGP

A0A5D3C0K2 Reverse transcriptase1.0e-0537.35Show/hide
Query:  MAEERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQ----KRTEVKDADSGQASPRGAGRGRG
        MA+E+W+P++YEKLP+FC  CG +GH +++C  + D  E   R+G  L + + +      +R EV+   S     RG G G+G
Subjt:  MAEERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQ----KRTEVKDADSGQASPRGAGRGRG

A0A803QP51 Uncharacterized protein3.9e-0545.1Show/hide
Query:  EERWLPITYEKLPNFCSGCGCLGHSLKDCVSLV----DGVEIEPRYGPDLI
        +E WL   YE LP FC  CGCLGH  + CV  +    +G+E E  Y P+L+
Subjt:  EERWLPITYEKLPNFCSGCGCLGHSLKDCVSLV----DGVEIEPRYGPDLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAAGAACGATGGCTTCCAATCACCTATGAGAAGTTACCAAATTTTTGCTCTGGGTGTGGATGCTTAGGTCATTCATTAAAAGATTGTGTGAGTCTGGTAGACGG
TGTTGAAATTGAGCCTCGTTATGGACCAGATCTTATAGAACAGAGACCTAATTGGCAAAAGAGGACAGAGGTAAAGGATGCAGATTCAGGGCAAGCATCTCCAAGGGGCG
CTGGGCGAGGCCGTGGACGAATCAGACCCAAAGTTCACGAAACGGATACGGATACCTTGGAAGAGAACAAGTGGACCGATCTTGAACCAGATGTTCTTGTCAACGGAAGA
GGGCAAACGACCATAGAGGAAGAAAATGAAGATCAGTCGTATACGATGGTGATTGACCGTTCGGAAAATCACCGAAACCAATGGAGAACAAGCCGATCCGTTACACAAGG
AAGGTCACGCATTCTTCGCCGGCGTTACAAAATTGTCTGTTTATGGAATTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAAGAACGATGGCTTCCAATCACCTATGAGAAGTTACCAAATTTTTGCTCTGGGTGTGGATGCTTAGGTCATTCATTAAAAGATTGTGTGAGTCTGGTAGACGG
TGTTGAAATTGAGCCTCGTTATGGACCAGATCTTATAGAACAGAGACCTAATTGGCAAAAGAGGACAGAGGTAAAGGATGCAGATTCAGGGCAAGCATCTCCAAGGGGCG
CTGGGCGAGGCCGTGGACGAATCAGACCCAAAGTTCACGAAACGGATACGGATACCTTGGAAGAGAACAAGTGGACCGATCTTGAACCAGATGTTCTTGTCAACGGAAGA
GGGCAAACGACCATAGAGGAAGAAAATGAAGATCAGTCGTATACGATGGTGATTGACCGTTCGGAAAATCACCGAAACCAATGGAGAACAAGCCGATCCGTTACACAAGG
AAGGTCACGCATTCTTCGCCGGCGTTACAAAATTGTCTGTTTATGGAATTTGTGA
Protein sequenceShow/hide protein sequence
MAEERWLPITYEKLPNFCSGCGCLGHSLKDCVSLVDGVEIEPRYGPDLIEQRPNWQKRTEVKDADSGQASPRGAGRGRGRIRPKVHETDTDTLEENKWTDLEPDVLVNGR
GQTTIEEENEDQSYTMVIDRSENHRNQWRTSRSVTQGRSRILRRRYKIVCLWNL