; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10003716 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003716
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRetrotransposable element Tf2
Genome locationChr08:6695117..6695656
RNA-Seq ExpressionHG10003716
SyntenyHG10003716
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032923.1 polyprotein [Cucumis melo var. makuwa]1.2e-5765.36Show/hide
Query:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE
        MYFGL+EEIFPVEIQ+S+++F  SIY SPLSK FRF+LYFQIPWIF WNFQLGP GNFK LSK+L IKWWEKF+YSHLE +K+KDWFKAN+HLQD++RQE
Subjt:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE

Query:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
        DE F L KN++MS+LA A +Q +F SV+N V+  LS D D+  +  S ASVN+     D+ DYDPY G + NDP LD+Q
Subjt:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
KAA0056777.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.3e-5865.92Show/hide
Query:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE
        MYFGL+EEIFPVE+Q+S+++F  SIY SPLSK FRF+LYFQIPWIF WNFQLGP GNFK LSK+LRIKWWEKF+YSHLE +K+KDWFKAN+HLQD++RQE
Subjt:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE

Query:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
        DE F L KN++MS+LA A +Q +F SV+N V+  LS D D+  +  S ASVNN     D+ DYDPY G + NDP LD+Q
Subjt:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.8e-5865.92Show/hide
Query:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE
        MYFGL+EEIFPVE+Q+S+++F  SIY SPLSK FRF+LYFQIPWIF WNFQLGP GNFK LSK+LRIKWWEKF+YSHLE +K+KDWFKAN+HLQD++RQE
Subjt:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE

Query:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
        DE F L KN++MS+LA A +Q +F SV+N V+  LS D D+  +  S ASVNN     D+ DYDPY G + NDP LD+Q
Subjt:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
KAA0068172.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.3e-5865.92Show/hide
Query:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE
        MYFGL+EEIFPVE+Q+S+++F  SIY SPLSK FRF+LYFQIPWIF WNFQLGP GNFK LSK+LRIKWWEKF+YSHLE +K+KDWFKAN+HLQD++RQE
Subjt:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE

Query:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
        DE F L KN++MS+LA A +Q +F SV+N V+  LS D D+  +  S ASVNN     D+ DYDPY G + NDP LD+Q
Subjt:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
TYK28077.1 polyprotein [Cucumis melo var. makuwa]1.5e-5765.36Show/hide
Query:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE
        MYFGL+EEIFPVEIQ+S+++F  SIY SPLSK FRF+LYFQIPWIF WNFQLGP GNFK LSK+L IKWWEKF+YSHLE +K+KDWFKAN+HLQD++RQE
Subjt:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE

Query:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
        DE F L KN++MS+LA A +Q +F SV+N V+  LS D D+  +  S ASVN+     D+ DYDPY G + NDP LD+Q
Subjt:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
TrEMBL top hitse value%identityAlignment
A0A5A7SR64 Polyprotein5.6e-5865.36Show/hide
Query:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE
        MYFGL+EEIFPVEIQ+S+++F  SIY SPLSK FRF+LYFQIPWIF WNFQLGP GNFK LSK+L IKWWEKF+YSHLE +K+KDWFKAN+HLQD++RQE
Subjt:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE

Query:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
        DE F L KN++MS+LA A +Q +F SV+N V+  LS D D+  +  S ASVN+     D+ DYDPY G + NDP LD+Q
Subjt:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
A0A5A7UVN1 Retrotransposable element Tf21.1e-5865.92Show/hide
Query:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE
        MYFGL+EEIFPVE+Q+S+++F  SIY SPLSK FRF+LYFQIPWIF WNFQLGP GNFK LSK+LRIKWWEKF+YSHLE +K+KDWFKAN+HLQD++RQE
Subjt:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE

Query:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
        DE F L KN++MS+LA A +Q +F SV+N V+  LS D D+  +  S ASVNN     D+ DYDPY G + NDP LD+Q
Subjt:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
A0A5A7V6D1 Retrotransposable element Tf28.6e-5965.92Show/hide
Query:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE
        MYFGL+EEIFPVE+Q+S+++F  SIY SPLSK FRF+LYFQIPWIF WNFQLGP GNFK LSK+LRIKWWEKF+YSHLE +K+KDWFKAN+HLQD++RQE
Subjt:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE

Query:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
        DE F L KN++MS+LA A +Q +F SV+N V+  LS D D+  +  S ASVNN     D+ DYDPY G + NDP LD+Q
Subjt:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
A0A5A7VIK9 Retrotransposable element Tf21.1e-5865.92Show/hide
Query:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE
        MYFGL+EEIFPVE+Q+S+++F  SIY SPLSK FRF+LYFQIPWIF WNFQLGP GNFK LSK+LRIKWWEKF+YSHLE +K+KDWFKAN+HLQD++RQE
Subjt:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE

Query:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
        DE F L KN++MS+LA A +Q +F SV+N V+  LS D D+  +  S ASVNN     D+ DYDPY G + NDP LD+Q
Subjt:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
A0A5D3DW87 Polyprotein7.3e-5865.36Show/hide
Query:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE
        MYFGL+EEIFPVEIQ+S+++F  SIY SPLSK FRF+LYFQIPWIF WNFQLGP GNFK LSK+L IKWWEKF+YSHLE +K+KDWFKAN+HLQD++RQE
Subjt:  MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQE

Query:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
        DE F L KN++MS+LA A +Q +F SV+N V+  LS D D+  +  S ASVN+     D+ DYDPY G + NDP LD+Q
Subjt:  DEQFTLAKNSIMSSLAVAGSQADFTSVLNTVIRQLSGD-DNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTTTGGACTCACTGAGGAGATCTTCCCAGTAGAAATCCAGAAGTCCTTCTACGTATTCTCAAATAGTATCTACTTGTCTCCACTTTCAAAGATGTTTAGATTCTC
CCTTTACTTCCAGATTCCCTGGATCTTTTACTGGAATTTCCAGCTTGGACCACAGGGCAACTTCAAAGTGCTAAGCAAGGCTTTACGCATAAAATGGTGGGAAAAGTTTG
ATTATTCCCATCTTGAAGCTTCAAAACTAAAGGACTGGTTTAAAGCCAACGTCCATCTACAAGACTTATCTCGCCAAGAAGATGAACAATTCACTCTGGCGAAGAACTCA
ATCATGTCATCATTAGCTGTAGCAGGCTCACAAGCTGACTTCACTTCAGTACTCAATACCGTCATAAGACAATTATCAGGAGACGACAATCAACATGATGCGGGTTCCTC
AGCATCAGTAAACAATAATGAGATCAGTGACGACGAAGAGGACTACGATCCTTACGCCGGCTACAATTTCAACGATCCATTATTAGATTCACAATCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTATTTTGGACTCACTGAGGAGATCTTCCCAGTAGAAATCCAGAAGTCCTTCTACGTATTCTCAAATAGTATCTACTTGTCTCCACTTTCAAAGATGTTTAGATTCTC
CCTTTACTTCCAGATTCCCTGGATCTTTTACTGGAATTTCCAGCTTGGACCACAGGGCAACTTCAAAGTGCTAAGCAAGGCTTTACGCATAAAATGGTGGGAAAAGTTTG
ATTATTCCCATCTTGAAGCTTCAAAACTAAAGGACTGGTTTAAAGCCAACGTCCATCTACAAGACTTATCTCGCCAAGAAGATGAACAATTCACTCTGGCGAAGAACTCA
ATCATGTCATCATTAGCTGTAGCAGGCTCACAAGCTGACTTCACTTCAGTACTCAATACCGTCATAAGACAATTATCAGGAGACGACAATCAACATGATGCGGGTTCCTC
AGCATCAGTAAACAATAATGAGATCAGTGACGACGAAGAGGACTACGATCCTTACGCCGGCTACAATTTCAACGATCCATTATTAGATTCACAATCATAG
Protein sequenceShow/hide protein sequence
MYFGLTEEIFPVEIQKSFYVFSNSIYLSPLSKMFRFSLYFQIPWIFYWNFQLGPQGNFKVLSKALRIKWWEKFDYSHLEASKLKDWFKANVHLQDLSRQEDEQFTLAKNS
IMSSLAVAGSQADFTSVLNTVIRQLSGDDNQHDAGSSASVNNNEISDDEEDYDPYAGYNFNDPLLDSQS