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HG10003769 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003769
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionU2 snRNP auxiliary factor large subunit
Genome locationChr08:8407159..8407344
RNA-Seq ExpressionHG10003769
SyntenyHG10003769
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0008380 - RNA splicing (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008445604.2 PREDICTED: splicing factor U2af large subunit B-like isoform X11 [Cucumis melo]7.5e-1797.83Show/hide
Query:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
        +VFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
Subjt:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA

XP_011656485.1 splicing factor U2af large subunit A isoform X1 [Cucumis sativus]7.5e-1797.83Show/hide
Query:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
        +VFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
Subjt:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA

XP_011656491.1 splicing factor U2af large subunit A isoform X4 [Cucumis sativus]7.5e-1797.83Show/hide
Query:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
        +VFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
Subjt:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA

XP_016900128.1 PREDICTED: splicing factor U2af large subunit B-like isoform X10 [Cucumis melo]7.5e-1797.83Show/hide
Query:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
        +VFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
Subjt:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA

XP_038884486.1 splicing factor U2af large subunit B isoform X11 [Benincasa hispida]7.5e-1797.83Show/hide
Query:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
        +VFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
Subjt:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA

TrEMBL top hitse value%identityAlignment
A0A0A0K920 U2 snRNP auxiliary factor large subunit3.6e-1797.83Show/hide
Query:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
        +VFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
Subjt:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA

A0A1S3BD50 U2 snRNP auxiliary factor large subunit3.6e-1797.83Show/hide
Query:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
        +VFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
Subjt:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA

A0A1S3BDZ2 U2 snRNP auxiliary factor large subunit3.6e-1797.83Show/hide
Query:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
        +VFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
Subjt:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA

A0A1S4DVW2 U2 snRNP auxiliary factor large subunit3.6e-1797.83Show/hide
Query:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
        +VFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
Subjt:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA

A0A1S4DVW4 U2 snRNP auxiliary factor large subunit3.6e-1797.83Show/hide
Query:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
        +VFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
Subjt:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA

SwissProt top hitse value%identityAlignment
Q2QKB4 Splicing factor U2af large subunit B1.8e-1369.57Show/hide
Query:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
        +VFLEYAD+D +TKA+  ++GRKFGGN V+AVFYPENKFA  +YDA
Subjt:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA

Q2QZL4 Splicing factor U2af large subunit B4.7e-1471.74Show/hide
Query:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
        +VFLEYAD+D ATKA+  ++GRKFGGN V+AVFYPENKF+  EYDA
Subjt:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA

Q8L716 Splicing factor U2af large subunit B9.5e-1571.11Show/hide
Query:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYD
        +VFLEYAD+D ++KAR+G+NGRKFGGNQV+AV+YPE+K+AQG+Y+
Subjt:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYD

Q9ZR39 Splicing factor U2af large subunit A8.6e-1676.09Show/hide
Query:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
        +VFLEYAD+D ++KAR GLNGRKFGGNQV+AVFYPENKF++G+Y+A
Subjt:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA

Q9ZR40 Splicing factor U2af large subunit B3.3e-1577.78Show/hide
Query:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYD
        +VFLEYAD+DS++KAR  LNGRKFGGNQV+AVFYPENKF +G+YD
Subjt:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYD

Arabidopsis top hitse value%identityAlignment
AT1G60830.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.8e-1671.11Show/hide
Query:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYD
        +VFLEYAD+D ++KAR+G+NGRKFGGNQV+AV+YPE+K+AQG+Y+
Subjt:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYD

AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor6.8e-1671.11Show/hide
Query:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYD
        +VFLEYAD+D ++KAR+G+NGRKFGGNQV+AV+YPE+K+AQG+Y+
Subjt:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYD

AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor2.9e-1467.39Show/hide
Query:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
        +VFL+YAD D +T+AR G+NGRKFGGN+V+AV+YPE+KF QG+Y A
Subjt:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA

AT4G36690.4 U2 snRNP auxilliary factor, large subunit, splicing factor2.9e-1467.39Show/hide
Query:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA
        +VFL+YAD D +T+AR G+NGRKFGGN+V+AV+YPE+KF QG+Y A
Subjt:  QVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAATTTGGAAGTCTAATCTCTTCCTGGGTTTTTGTATATACCAGGTGTTTTTGGAGTATGCAGATATTGACAGCGCAACAAAAGCTCGAGCCGGTTTGAATGGAAG
AAAATTTGGAGGGAACCAAGTGATGGCTGTATTCTATCCTGAGAACAAGTTTGCGCAAGGGGAGTATGATGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTAATTTGGAAGTCTAATCTCTTCCTGGGTTTTTGTATATACCAGGTGTTTTTGGAGTATGCAGATATTGACAGCGCAACAAAAGCTCGAGCCGGTTTGAATGGAAG
AAAATTTGGAGGGAACCAAGTGATGGCTGTATTCTATCCTGAGAACAAGTTTGCGCAAGGGGAGTATGATGCCTAA
Protein sequenceShow/hide protein sequence
MLIWKSNLFLGFCIYQVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGEYDA