; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10003792 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003792
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionHistone H3
Genome locationChr08:9029644..9033073
RNA-Seq ExpressionHG10003792
SyntenyHG10003792
Gene Ontology termsGO:0051693 - actin filament capping (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0005856 - cytoskeleton (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
GO:0051015 - actin filament binding (molecular function)
InterPro domainsIPR000164 - Histone H3/CENP-A
IPR007125 - Histone H2A/H2B/H3
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5114821.1 hypothetical protein JHK82_038090 [Glycine max]2.6e-5380.67Show/hide
Query:  CLSKWRTSLSFKR--PKSVEEGRDLCFEGLPGK---TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ
        C +++ +S S KR   ++ +  R       P K   T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ
Subjt:  CLSKWRTSLSFKR--PKSVEEGRDLCFEGLPGK---TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ

Query:  SSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        SSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  SSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

KAG7035840.1 histone H3.2, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-5384.03Show/hide
Query:  WRTSLSFKRPKSVEEGRDLCFEGLPGK---TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSA
        WR+SL   R K  +  R       P K   T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+A
Subjt:  WRTSLSFKRPKSVEEGRDLCFEGLPGK---TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSA

Query:  LQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        LQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  LQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

VAH21928.1 unnamed protein product [Triticum turgidum subsp. durum]1.2e-5380.13Show/hide
Query:  SAMESCLSKWRTSLSFKRPKSVEEGRDLCFEGLPG-KTEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF
        +++E  ++ WR ++  K+P         C   LP   T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF
Subjt:  SAMESCLSKWRTSLSFKRPKSVEEGRDLCFEGLPG-KTEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF

Query:  QSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        QSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  QSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

WP_212576888.1 histone H3, partial [Vibrio parahaemolyticus]2.6e-5380.67Show/hide
Query:  CLSKWRTSLSFKR--PKSVEEGRDLCFEGLPGK---TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ
        C +++ +S S KR   ++ +  R       P K   T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ
Subjt:  CLSKWRTSLSFKR--PKSVEEGRDLCFEGLPGK---TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ

Query:  SSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        SSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  SSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

XP_027344350.1 actin-66-like isoform X1 [Abrus precatorius]7.5e-5383.1Show/hide
Query:  TSLSFKRPKSVEEGRDLCFEGLPGK---TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQ
        +S+  K  ++ +  R       P K   T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQ
Subjt:  TSLSFKRPKSVEEGRDLCFEGLPGK---TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQ

Query:  EAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        EAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  EAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

TrEMBL top hitse value%identityAlignment
A0A1J3FDQ8 Histone H3.2 (Fragment)3.6e-5378.67Show/hide
Query:  SKWRTSLSFKRPKSVEEGRDLCFEGLPGK-------TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ
        +K R    FK  + +   +    +   GK       T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ
Subjt:  SKWRTSLSFKRPKSVEEGRDLCFEGLPGK-------TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ

Query:  SSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        SSAV+ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  SSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

A0A3L6S0Q4 Putative villin3.6e-5397.41Show/hide
Query:  GKTEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI
        G T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Subjt:  GKTEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI

Query:  MPKDIQLARRIRGERA
        MPKDIQLARRIRGERA
Subjt:  MPKDIQLARRIRGERA

A0A446K993 Histone domain-containing protein5.6e-5480.13Show/hide
Query:  SAMESCLSKWRTSLSFKRPKSVEEGRDLCFEGLPG-KTEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF
        +++E  ++ WR ++  K+P         C   LP   T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF
Subjt:  SAMESCLSKWRTSLSFKRPKSVEEGRDLCFEGLPG-KTEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF

Query:  QSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        QSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  QSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

A0A453G001 Histone H33.6e-5382.52Show/hide
Query:  RTSLSFKRPKSVEEGRDLCFEGLPGK---TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSAL
        + ++ F R ++ +  R       P K   T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSAL
Subjt:  RTSLSFKRPKSVEEGRDLCFEGLPGK---TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSAL

Query:  QEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
        QEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Subjt:  QEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

T1LQC8 Histone domain-containing protein2.1e-5398.28Show/hide
Query:  GKTEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI
        G T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Subjt:  GKTEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI

Query:  MPKDIQLARRIRGERA
        MPKDIQLARRIRGERA
Subjt:  MPKDIQLARRIRGERA

SwissProt top hitse value%identityAlignment
P59226 Histone H3.22.9e-5598.25Show/hide
Query:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
        T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
Subjt:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP

Query:  KDIQLARRIRGERA
        KDIQLARRIRGERA
Subjt:  KDIQLARRIRGERA

P68427 Histone H3.21.3e-5599.12Show/hide
Query:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
        T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
Subjt:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP

Query:  KDIQLARRIRGERA
        KDIQLARRIRGERA
Subjt:  KDIQLARRIRGERA

P68428 Histone H3.21.3e-5599.12Show/hide
Query:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
        T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
Subjt:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP

Query:  KDIQLARRIRGERA
        KDIQLARRIRGERA
Subjt:  KDIQLARRIRGERA

P68429 Histone H3.21.3e-5599.12Show/hide
Query:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
        T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
Subjt:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP

Query:  KDIQLARRIRGERA
        KDIQLARRIRGERA
Subjt:  KDIQLARRIRGERA

P68430 Histone H3.21.3e-5599.12Show/hide
Query:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
        T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
Subjt:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP

Query:  KDIQLARRIRGERA
        KDIQLARRIRGERA
Subjt:  KDIQLARRIRGERA

Arabidopsis top hitse value%identityAlignment
AT1G09200.1 Histone superfamily protein2.0e-5698.25Show/hide
Query:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
        T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
Subjt:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP

Query:  KDIQLARRIRGERA
        KDIQLARRIRGERA
Subjt:  KDIQLARRIRGERA

AT3G27360.1 Histone superfamily protein2.0e-5698.25Show/hide
Query:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
        T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
Subjt:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP

Query:  KDIQLARRIRGERA
        KDIQLARRIRGERA
Subjt:  KDIQLARRIRGERA

AT5G10390.1 Histone superfamily protein2.0e-5698.25Show/hide
Query:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
        T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
Subjt:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP

Query:  KDIQLARRIRGERA
        KDIQLARRIRGERA
Subjt:  KDIQLARRIRGERA

AT5G10400.1 Histone superfamily protein2.0e-5698.25Show/hide
Query:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
        T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
Subjt:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP

Query:  KDIQLARRIRGERA
        KDIQLARRIRGERA
Subjt:  KDIQLARRIRGERA

AT5G65360.1 Histone superfamily protein2.0e-5698.25Show/hide
Query:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
        T+AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP
Subjt:  TEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP

Query:  KDIQLARRIRGERA
        KDIQLARRIRGERA
Subjt:  KDIQLARRIRGERA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAGATGGTGATAGTCTCAGCGATGGAGAGTTGTCTTTCGAAATGGAGAACTTCTTTGTCTTTTAAACGCCCCAAATCTGTTGAGGAGGGTCGAGATTTGTGCTT
TGAGGGTTTACCAGGAAAAACGGAGGCCGCCAGGAAGTCGGCTCCGGCCACCGGAGGAGTAAAGAAGCCGCACAGATTCCGTCCGGGGACAGTGGCGTTGAGGGAGATTC
GGAAGTACCAGAAGAGCACAGAACTTCTGATCCGAAAGCTTCCGTTTCAGCGGCTAGTTAGAGAGATCGCTCAGGATTTCAAGACCGATCTCCGATTCCAGAGCAGCGCT
GTTTCGGCATTGCAAGAGGCGGCGGAGGCTTATCTCGTTGGATTGTTTGAAGATACTAATCTGTGTGCGATTCACGCTAAGAGAGTTACGATTATGCCTAAGGATATTCA
ATTGGCGAGGCGGATTAGAGGTGAGAGAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAGATGGTGATAGTCTCAGCGATGGAGAGTTGTCTTTCGAAATGGAGAACTTCTTTGTCTTTTAAACGCCCCAAATCTGTTGAGGAGGGTCGAGATTTGTGCTT
TGAGGGTTTACCAGGAAAAACGGAGGCCGCCAGGAAGTCGGCTCCGGCCACCGGAGGAGTAAAGAAGCCGCACAGATTCCGTCCGGGGACAGTGGCGTTGAGGGAGATTC
GGAAGTACCAGAAGAGCACAGAACTTCTGATCCGAAAGCTTCCGTTTCAGCGGCTAGTTAGAGAGATCGCTCAGGATTTCAAGACCGATCTCCGATTCCAGAGCAGCGCT
GTTTCGGCATTGCAAGAGGCGGCGGAGGCTTATCTCGTTGGATTGTTTGAAGATACTAATCTGTGTGCGATTCACGCTAAGAGAGTTACGATTATGCCTAAGGATATTCA
ATTGGCGAGGCGGATTAGAGGTGAGAGAGCTTAG
Protein sequenceShow/hide protein sequence
MVKMVIVSAMESCLSKWRTSLSFKRPKSVEEGRDLCFEGLPGKTEAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA
VSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA