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HG10003798 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003798
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRetrovirus-related pol polyprotein from transposon tnt 1-94
Genome locationChr08:9166911..9167731
RNA-Seq ExpressionHG10003798
SyntenyHG10003798
Gene Ontology termsGO:0015935 - small ribosomal subunit (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025306.1 hypothetical protein E6C27_scaffold541G001610 [Cucumis melo var. makuwa]2.4e-0960Show/hide
Query:  QKIEDNE--EEEDNERENRSKMVHDTLDNVK-IQEKEKMKAMQITKNVENVRLKRQPKLSKKMSDNAKDQKNTKD
        ++IEDNE  EE+DN REN+SKMVHDT +NVK +QEK K+K M+I  N+E  R KRQPK SKK+ +N K+QKN ++
Subjt:  QKIEDNE--EEEDNERENRSKMVHDTLDNVK-IQEKEKMKAMQITKNVENVRLKRQPKLSKKMSDNAKDQKNTKD
KAA0031317.1 uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa]4.2e-0957.69Show/hide
Query:  QKIEDNE--EEEDNERENRSKMVHDTLDNVK-IQEKEKMKAMQITKNVENVRLKRQPKLSKKMSDNAKDQKNTKDQRN
        ++IEDNE  EE+DN REN+SKMVHDT + VK +QEK K+K M+I  N+E  R KRQPK SKK+ +N K+QKN + ++N
Subjt:  QKIEDNE--EEEDNERENRSKMVHDTLDNVK-IQEKEKMKAMQITKNVENVRLKRQPKLSKKMSDNAKDQKNTKDQRN
KAA0037325.1 hypothetical protein E6C27_scaffold278G00130 [Cucumis melo var. makuwa]1.1e-1451.18Show/hide
Query:  MLDVDVDANIDKAVEYTTTYVKEKETIDSLYDYLHCLQKIEDNEEEEDNERENRSKMVHDTLDNVK-IQEKEKMKAMQITKNVENVRLKRQPKLSKKMSD
        M+D +VDANIDKA    T   KEKE              IEDNEE++DN  EN+SKMVHDT + VK +QEKEK+K M+I KN+EN R KRQPK SKK+ +
Subjt:  MLDVDVDANIDKAVEYTTTYVKEKETIDSLYDYLHCLQKIEDNEEEEDNERENRSKMVHDTLDNVK-IQEKEKMKAMQITKNVENVRLKRQPKLSKKMSD

Query:  NAKDQKNTKD-QRNAKRPEESFSKTNK
        N K+QK  KD Q+NA+  +    K  +
Subjt:  NAKDQKNTKD-QRNAKRPEESFSKTNK
TYK15261.1 hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa]4.2e-0957.69Show/hide
Query:  QKIEDNE--EEEDNERENRSKMVHDTLDNVK-IQEKEKMKAMQITKNVENVRLKRQPKLSKKMSDNAKDQKNTKDQRN
        ++IEDNE  EE+DN REN+SKMVHDT + VK +QEK K+K M+I  N+E  R KRQPK SKK+ +N K+QKN + ++N
Subjt:  QKIEDNE--EEEDNERENRSKMVHDTLDNVK-IQEKEKMKAMQITKNVENVRLKRQPKLSKKMSDNAKDQKNTKDQRN
XP_031742086.1 uncharacterized protein LOC116404049 [Cucumis sativus]1.1e-1450Show/hide
Query:  MLDVDVDANIDKAVEYTTTYVKEKETIDSLYDYLHCLQKIEDNEEEEDNERENRSKMVHDTLDNVKI-QEKEKMKAMQITKNVENVRLKRQPKLSKKMSD
        M+D D+D NID+AV Y T+  K+KET+D+            + EE++DN REN+SK VHD    VKI QEK K K M+I KN+EN R KR+PK SKK+ +
Subjt:  MLDVDVDANIDKAVEYTTTYVKEKETIDSLYDYLHCLQKIEDNEEEEDNERENRSKMVHDTLDNVKI-QEKEKMKAMQITKNVENVRLKRQPKLSKKMSD

Query:  NAKDQKNTKDQRNAKR
        N KDQK  K  + +KR
Subjt:  NAKDQKNTKDQRNAKR
TrEMBL top hitse value%identityAlignment
A0A0A0LZ92 Uncharacterized protein2.9e-1649.23Show/hide
Query:  MLDVDVDANIDKAVEYTTTYVKEKETIDSLYDYLHCLQKIEDN--EEEEDNERENRSKMVHDTLDNVKI-QEKEKMKAMQITKNVENVRLKRQPKLSKKM
        M+D D+D NID+AV Y T+  K+KE +D+  D     + +++N  EE++DN REN+SK VHD    VKI QEK K K M+I KN+EN R KR+PK SKK+
Subjt:  MLDVDVDANIDKAVEYTTTYVKEKETIDSLYDYLHCLQKIEDN--EEEEDNERENRSKMVHDTLDNVKI-QEKEKMKAMQITKNVENVRLKRQPKLSKKM

Query:  SDNAKDQKNTKDQRNAK-RPEESFSKTNKA
         +N KDQK  KDQ+N K + +ES   T ++
Subjt:  SDNAKDQKNTKDQRNAK-RPEESFSKTNKA
A0A5A7T785 Uncharacterized protein5.5e-1551.18Show/hide
Query:  MLDVDVDANIDKAVEYTTTYVKEKETIDSLYDYLHCLQKIEDNEEEEDNERENRSKMVHDTLDNVK-IQEKEKMKAMQITKNVENVRLKRQPKLSKKMSD
        M+D +VDANIDKA    T   KEKE              IEDNEE++DN  EN+SKMVHDT + VK +QEKEK+K M+I KN+EN R KRQPK SKK+ +
Subjt:  MLDVDVDANIDKAVEYTTTYVKEKETIDSLYDYLHCLQKIEDNEEEEDNERENRSKMVHDTLDNVK-IQEKEKMKAMQITKNVENVRLKRQPKLSKKMSD

Query:  NAKDQKNTKD-QRNAKRPEESFSKTNK
        N K+QK  KD Q+NA+  +    K  +
Subjt:  NAKDQKNTKD-QRNAKRPEESFSKTNK
A0A5A7VDY1 Uncharacterized protein2.0e-0957.69Show/hide
Query:  QKIEDNE--EEEDNERENRSKMVHDTLDNVK-IQEKEKMKAMQITKNVENVRLKRQPKLSKKMSDNAKDQKNTKDQRN
        ++IEDNE  EE+DN REN+SKMVHDT + VK +QEK K+K M+I  N+E  R KRQPK SKK+ +N K+QKN + ++N
Subjt:  QKIEDNE--EEEDNERENRSKMVHDTLDNVK-IQEKEKMKAMQITKNVENVRLKRQPKLSKKMSDNAKDQKNTKDQRN
A0A5A7VIA9 Uncharacterized protein2.0e-0957.69Show/hide
Query:  QKIEDNE--EEEDNERENRSKMVHDTLDNVK-IQEKEKMKAMQITKNVENVRLKRQPKLSKKMSDNAKDQKNTKDQRN
        ++IEDNE  EE+DN REN+SKMVHDT + VK +QEK K+K M+I  N+E  R KRQPK SKK+ +N K+QKN + ++N
Subjt:  QKIEDNE--EEEDNERENRSKMVHDTLDNVK-IQEKEKMKAMQITKNVENVRLKRQPKLSKKMSDNAKDQKNTKDQRN
A0A5D3CTS8 Uncharacterized protein2.0e-0957.69Show/hide
Query:  QKIEDNE--EEEDNERENRSKMVHDTLDNVK-IQEKEKMKAMQITKNVENVRLKRQPKLSKKMSDNAKDQKNTKDQRN
        ++IEDNE  EE+DN REN+SKMVHDT + VK +QEK K+K M+I  N+E  R KRQPK SKK+ +N K+QKN + ++N
Subjt:  QKIEDNE--EEEDNERENRSKMVHDTLDNVK-IQEKEKMKAMQITKNVENVRLKRQPKLSKKMSDNAKDQKNTKDQRN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGATGTTGATGTTGATGCTAATATTGATAAAGCGGTTGAATATACAACCACTTATGTGAAGGAGAAAGAGACTATTGACAGTTTGTATGATTATTTGCATTGTCT
ACAAAAGATTGAAGACAATGAGGAAGAAGAAGATAATGAACGTGAAAATAGGTCAAAGATGGTGCATGACACTTTAGACAATGTGAAGATTCAAGAAAAGGAAAAAATGA
AAGCTATGCAAATAACAAAGAATGTTGAAAATGTTAGGCTAAAGAGACAACCTAAACTATCAAAGAAAATGTCGGATAATGCAAAAGATCAAAAGAATACAAAAGACCAA
AGGAATGCAAAAAGACCAGAAGAAAGCTTCTCCAAAACAAACAAGGCATTCTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAGATGTTGATGTTGATGCTAATATTGATAAAGCGGTTGAATATACAACCACTTATGTGAAGGAGAAAGAGACTATTGACAGTTTGTATGATTATTTGCATTGTCT
ACAAAAGATTGAAGACAATGAGGAAGAAGAAGATAATGAACGTGAAAATAGGTCAAAGATGGTGCATGACACTTTAGACAATGTGAAGATTCAAGAAAAGGAAAAAATGA
AAGCTATGCAAATAACAAAGAATGTTGAAAATGTTAGGCTAAAGAGACAACCTAAACTATCAAAGAAAATGTCGGATAATGCAAAAGATCAAAAGAATACAAAAGACCAA
AGGAATGCAAAAAGACCAGAAGAAAGCTTCTCCAAAACAAACAAGGCATTCTCCTAG
Protein sequenceShow/hide protein sequence
MLDVDVDANIDKAVEYTTTYVKEKETIDSLYDYLHCLQKIEDNEEEEDNERENRSKMVHDTLDNVKIQEKEKMKAMQITKNVENVRLKRQPKLSKKMSDNAKDQKNTKDQ
RNAKRPEESFSKTNKAFS