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HG10003811 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003811
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRetrotransposable element Tf2
Genome locationChr08:9568972..9569271
RNA-Seq ExpressionHG10003811
SyntenyHG10003811
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032923.1 polyprotein [Cucumis melo var. makuwa]3.8e-1856.57Show/hide
Query:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP
        K+KDWFK N+HLQD++ QEDE F L KN ++S+LAGA +Q +F SV+N VV  +S D DD  +  S ASVN+     D+ DYDPYVG D+NDP LD+QP
Subjt:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP

KAA0038028.1 polyprotein [Cucumis melo var. makuwa]1.9e-1754.55Show/hide
Query:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP
        K+KDWFK N+HLQD++ QEDE F L KN ++S+L GA +Q +F SV+N VV  +S D DD  +  S AS+NN     D+ DYDPY G D+NDP LD+QP
Subjt:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP

KAA0056777.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]6.5e-1856.57Show/hide
Query:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP
        K+KDWFK N+HLQD++ QEDE F L KN ++S+LAGA +Q +F SV+N VV  +S D DD  +  S ASVNN     D+ DYDPY G D+NDP LD+QP
Subjt:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]5.0e-1856.57Show/hide
Query:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP
        K+KDWFK N+HLQD++ QEDE F L KN ++S+LAGA +Q +F SV+N VV  +S D DD  +  S ASVNN     D+ DYDPY G D+NDP LD+QP
Subjt:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP

KAA0068172.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]6.5e-1856.57Show/hide
Query:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP
        K+KDWFK N+HLQD++ QEDE F L KN ++S+LAGA +Q +F SV+N VV  +S D DD  +  S ASVNN     D+ DYDPY G D+NDP LD+QP
Subjt:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP

TrEMBL top hitse value%identityAlignment
A0A5A7SR64 Polyprotein1.8e-1856.57Show/hide
Query:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP
        K+KDWFK N+HLQD++ QEDE F L KN ++S+LAGA +Q +F SV+N VV  +S D DD  +  S ASVN+     D+ DYDPYVG D+NDP LD+QP
Subjt:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP

A0A5A7UVN1 Retrotransposable element Tf23.1e-1856.57Show/hide
Query:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP
        K+KDWFK N+HLQD++ QEDE F L KN ++S+LAGA +Q +F SV+N VV  +S D DD  +  S ASVNN     D+ DYDPY G D+NDP LD+QP
Subjt:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP

A0A5A7V6D1 Retrotransposable element Tf22.4e-1856.57Show/hide
Query:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP
        K+KDWFK N+HLQD++ QEDE F L KN ++S+LAGA +Q +F SV+N VV  +S D DD  +  S ASVNN     D+ DYDPY G D+NDP LD+QP
Subjt:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP

A0A5A7VIK9 Retrotransposable element Tf23.1e-1856.57Show/hide
Query:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP
        K+KDWFK N+HLQD++ QEDE F L KN ++S+LAGA +Q +F SV+N VV  +S D DD  +  S ASVNN     D+ DYDPY G D+NDP LD+QP
Subjt:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP

A0A5D3DW87 Polyprotein9.1e-1855.56Show/hide
Query:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP
        K+KDWFK N+HLQD++ QEDE F L KN ++S+LAGA +Q +F SV+N VV  +S D DD  +  S ASVN+     D+ DYDPY G D+NDP LD+QP
Subjt:  KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGD-DDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGCTAAAGGATTGGTTTAAAGTCAATGTCCACCTACAAGATTTATCTCACCAAGAAGACGAACAGTTTGCATTGGCAAAGAATACAATAATATCATCATTAGCTGGAGC
AGGATCTCAAGCAGATTTTGCCTCAGTTCTCAATATAGTCGTAAGCCAGATATCCGGAGACGACGATCAACAAGATGCCCACTCTTCGGCATCAGTCAACAATAACGAGA
TCAGCGACGACGAGGAGGACTATGATCCTTACGTCGGCTACGATCTCAATGATCCGCTTTTAGATTCACAACCACAGTGA
mRNA sequenceShow/hide mRNA sequence
AAGCTAAAGGATTGGTTTAAAGTCAATGTCCACCTACAAGATTTATCTCACCAAGAAGACGAACAGTTTGCATTGGCAAAGAATACAATAATATCATCATTAGCTGGAGC
AGGATCTCAAGCAGATTTTGCCTCAGTTCTCAATATAGTCGTAAGCCAGATATCCGGAGACGACGATCAACAAGATGCCCACTCTTCGGCATCAGTCAACAATAACGAGA
TCAGCGACGACGAGGAGGACTATGATCCTTACGTCGGCTACGATCTCAATGATCCGCTTTTAGATTCACAACCACAGTGA
Protein sequenceShow/hide protein sequence
KLKDWFKVNVHLQDLSHQEDEQFALAKNTIISSLAGAGSQADFASVLNIVVSQISGDDDQQDAHSSASVNNNEISDDEEDYDPYVGYDLNDPLLDSQPQ