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HG10003879 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003879
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRetrotransposon protein
Genome locationChr08:11138637..11139119
RNA-Seq ExpressionHG10003879
SyntenyHG10003879
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-0935.25Show/hide
Query:  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP
        +  PS   +  TP S  H   +S P++ RRS S  G+  +  R   +  ++ IG I  W   K ++     + LYV+LQ+I  + + D L VA+SLL DP
Subjt:  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP

Query:  MLLSHFMDFPTQWKHDYCMEVL
         +L  F+D+P +WK+  CM +L
Subjt:  MLLSHFMDFPTQWKHDYCMEVL

KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-0833.61Show/hide
Query:  INAPSTLRLLPTPGSRRHSTSM--PTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP
        +  PS   +  TP S  H   +  P++ RR  S  G+  +  R   +  ++ IG I  W   K ++     + LY ELQ+I  + + D L VA+SLL DP
Subjt:  INAPSTLRLLPTPGSRRHSTSM--PTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP

Query:  MLLSHFMDFPTQWKHDYCMEVL
         +L  F+D+P +WK+  CM +L
Subjt:  MLLSHFMDFPTQWKHDYCMEVL

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]1.6e-0535.14Show/hide
Query:  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP
        +  PS   +  TP S  H   +S P++ RRS S  G+  +  R   +  ++ IG I  W   K ++     + LY ELQ+I  + + D L VA+SLL DP
Subjt:  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP

Query:  MLLSHFMDFPT
         +L  F+D+PT
Subjt:  MLLSHFMDFPT

TrEMBL top hitse value%identityAlignment
A0A5A7U7F7 Retrotransposon protein1.1e-0935.25Show/hide
Query:  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP
        +  PS   +  TP S  H   +S P++ RRS S  G+  +  R   +  ++ IG I  W   K ++     + LYV+LQ+I  + + D L VA+SLL DP
Subjt:  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP

Query:  MLLSHFMDFPTQWKHDYCMEVL
         +L  F+D+P +WK+  CM +L
Subjt:  MLLSHFMDFPTQWKHDYCMEVL

A0A5A7VG45 Retrotransposon protein9.6e-0933.61Show/hide
Query:  INAPSTLRLLPTPGSRRHSTSM--PTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP
        +  PS   +  TP S  H   +  P++ RR  S  G+  +  R   +  ++ IG I  W   K ++     + LY ELQ+I  + + D L VA+SLL DP
Subjt:  INAPSTLRLLPTPGSRRHSTSM--PTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP

Query:  MLLSHFMDFPTQWKHDYCMEVL
         +L  F+D+P +WK+  CM +L
Subjt:  MLLSHFMDFPTQWKHDYCMEVL

A0A5D3C7T4 Uncharacterized protein7.6e-0635.14Show/hide
Query:  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP
        +  PS   +  TP S  H   +S P++ RRS S  G+  +  R   +  ++ IG I  W   K ++     + LY ELQ+I  + + D L VA+SLL DP
Subjt:  INAPSTLRLLPTPGSRRH--STSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQSITRLSMQDGLTVAQSLLADP

Query:  MLLSHFMDFPT
         +L  F+D+PT
Subjt:  MLLSHFMDFPT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACATTCATTACTCTCCTCTTCCACACACTCTCTTCTATTCTCTCGAGCCTTCTTCTCCTTTCTCTGAAACTCTAATCAATGATCATTTTCTCACCATCAATGCTCC
TTCAACCCTCCGCCTTCTGCCTACCCCAGGAAGTAGAAGGCATAGCACTAGCATGCCAACAAGGAATAGAAGGTCTCAGTCATCAATTGGAGAATATAACGAGGTGGTAC
GAGAGGGCTTTCAGCTATTAACTCAGTTTATTGGTGGGATTACACAATGGCTTATCGTGAAGGATGACCTGACAAGGCATCATCGTAGAGAATTGTACGTCGAGCTGCAG
TCAATCACTAGACTGTCGATGCAAGATGGCTTAACTGTTGCACAATCTTTGCTTGCAGATCCTATGCTATTGAGCCACTTCATGGACTTCCCAACACAATGGAAGCATGA
TTATTGCATGGAAGTCCTTAGGCTACATCGGAATGAAACATGA
mRNA sequenceShow/hide mRNA sequence
ATGCACATTCATTACTCTCCTCTTCCACACACTCTCTTCTATTCTCTCGAGCCTTCTTCTCCTTTCTCTGAAACTCTAATCAATGATCATTTTCTCACCATCAATGCTCC
TTCAACCCTCCGCCTTCTGCCTACCCCAGGAAGTAGAAGGCATAGCACTAGCATGCCAACAAGGAATAGAAGGTCTCAGTCATCAATTGGAGAATATAACGAGGTGGTAC
GAGAGGGCTTTCAGCTATTAACTCAGTTTATTGGTGGGATTACACAATGGCTTATCGTGAAGGATGACCTGACAAGGCATCATCGTAGAGAATTGTACGTCGAGCTGCAG
TCAATCACTAGACTGTCGATGCAAGATGGCTTAACTGTTGCACAATCTTTGCTTGCAGATCCTATGCTATTGAGCCACTTCATGGACTTCCCAACACAATGGAAGCATGA
TTATTGCATGGAAGTCCTTAGGCTACATCGGAATGAAACATGA
Protein sequenceShow/hide protein sequence
MHIHYSPLPHTLFYSLEPSSPFSETLINDHFLTINAPSTLRLLPTPGSRRHSTSMPTRNRRSQSSIGEYNEVVREGFQLLTQFIGGITQWLIVKDDLTRHHRRELYVELQ
SITRLSMQDGLTVAQSLLADPMLLSHFMDFPTQWKHDYCMEVLRLHRNET