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HG10003996 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003996
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionextensin-like
Genome locationChr08:12569003..12569515
RNA-Seq ExpressionHG10003996
SyntenyHG10003996
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058916.1 hypothetical protein E6C27_scaffold98G00840 [Cucumis melo var. makuwa]3.6e-3257.22Show/hide
Query:  MSSWSSPTREQGRKEVLQISNDSRKIKKPPLPPITAARSTIIRHEYEDRIIKIKTPVDFTYIVQLLTGDPNRPPPEYPCTCDD----DNP----DRPLGI
        MSS   P  E G K +LQISN+SR IKKPPLP  T     ++++E E RII ++TP DF YIVQLLTGDPNRPPP YPC CD     +NP    D P GI
Subjt:  MSSWSSPTREQGRKEVLQISNDSRKIKKPPLPPITAARSTIIRHEYEDRIIKIKTPVDFTYIVQLLTGDPNRPPPEYPCTCDD----DNP----DRPLGI

Query:  LSPTPTSLPPLFSPDAFTPSPSPPPPSSSDQELCNFDLLEEW-AEPAALS-SCPVVNPPPSPVPPPPPTPPPAPNFRVPP
        LSP PTSL PL SP  FTP      PSS DQ+  +FDLL+E   EP  LS S PV+N  PSP PPP P P P P FRV P
Subjt:  LSPTPTSLPPLFSPDAFTPSPSPPPPSSSDQELCNFDLLEEW-AEPAALS-SCPVVNPPPSPVPPPPPTPPPAPNFRVPP

KAE8647157.1 hypothetical protein Csa_018820, partial [Cucumis sativus]3.3e-1444.05Show/hide
Query:  SSPTREQGRKEVLQISNDSRKIKKPPLPPITAARSTIIRHEYE--DRIIKIKTPVDFTYIVQLLTGDPNRPPPEYPCTCDDDNPDRPLGILSPTPTSLPP
        S P RE GRK+VLQIS DS+ IKKPPL P       +IR++YE   +II +KT VDFTYIVQLLTGDPN PPP YPC C      R L +  P       
Subjt:  SSPTREQGRKEVLQISNDSRKIKKPPLPPITAARSTIIRHEYE--DRIIKIKTPVDFTYIVQLLTGDPNRPPPEYPCTCDDDNPDRPLGILSPTPTSLPP

Query:  LFSPDAFTPSPSPPPPSSSDQELCNFDLLEEWAEPAALSSCPVVNPPPSPVPPPPPTPPPAPNFRVPP
           P+ FTP P+ P  S                         ++NPP  P       PP APNF+VPP
Subjt:  LFSPDAFTPSPSPPPPSSSDQELCNFDLLEEWAEPAALSSCPVVNPPPSPVPPPPPTPPPAPNFRVPP

KAG6602166.1 hypothetical protein SDJN03_07399, partial [Cucurbita argyrosperma subsp. sororia]1.0e-1041.5Show/hide
Query:  EQGRKEVLQISNDSRKIKKPPLPPITA-ARSTIIRHEYEDRIIKIKTPVDFTYIVQLLTGDPNRPPPEYPCTCDDDNPDRPLGILSPTPTSLPPLFSPDA
        E+  ++ LQIS  SR I KPPLPP +A  R  II+++ + +II +KTP +F YIVQLLTG PN PPP        D+ D P  +LSP P   PP   PD 
Subjt:  EQGRKEVLQISNDSRKIKKPPLPPITA-ARSTIIRHEYEDRIIKIKTPVDFTYIVQLLTGDPNRPPPEYPCTCDDDNPDRPLGILSPTPTSLPPLFSPDA

Query:  FTPSPSPPPPSSSDQELCNFDLLEEWAEPAALSSCPVVNPPPSPVPP
           S   PPP    +E+  +D   +W EP+           P P+PP
Subjt:  FTPSPSPPPPSSSDQELCNFDLLEEWAEPAALSSCPVVNPPPSPVPP

XP_022959600.1 extensin-like [Cucurbita moschata]3.8e-1041.5Show/hide
Query:  EQGRKEVLQISNDSRKIKKPPLPPITA-ARSTIIRHEYEDRIIKIKTPVDFTYIVQLLTGDPNRPPPEYPCTCDDDNPDRPLGILSPTPTSLPPLFSPDA
        E+  ++ LQIS  SR IKKPPLPP +A  R  II+++ + +II +KTP +F YIVQLLTG PN PPP        D  D P  +LSP     PP   PD 
Subjt:  EQGRKEVLQISNDSRKIKKPPLPPITA-ARSTIIRHEYEDRIIKIKTPVDFTYIVQLLTGDPNRPPPEYPCTCDDDNPDRPLGILSPTPTSLPPLFSPDA

Query:  FTPSPSPPPPSSSDQELCNFDLLEEWAEPAALSSCPVVNPPPSPVPP
           S   PPP    +E+  +D   +W EP+           P P+PP
Subjt:  FTPSPSPPPPSSSDQELCNFDLLEEWAEPAALSSCPVVNPPPSPVPP

XP_038885909.1 extensin-like [Benincasa hispida]2.9e-5069.35Show/hide
Query:  MSSWSSPTREQGRKEVLQISNDSRKIKKPPLPP---ITAARSTIIRHEYEDRIIKIKTPVDFTYIVQLLTGDPNRPPPEYPCTCDDDNP----DRPLGIL
        MSS  SP  E GRKE+ QISN+SRKIKKPP PP    TAA S ++R+E E +IIK++TP DF YIVQLLTGDPNRPPP+YPCT +D +P    DRP GIL
Subjt:  MSSWSSPTREQGRKEVLQISNDSRKIKKPPLPP---ITAARSTIIRHEYEDRIIKIKTPVDFTYIVQLLTGDPNRPPPEYPCTCDDDNP----DRPLGIL

Query:  SPTPTSLPPLFSPDAFTPSPSPP-------PPSSSDQELCNFDLLEEWAEPAALSSCPVVNPPPSPVPPP--PPTPPPAPNFRVPP
        SPTPTSLP L  PDAFTPSPSPP       PPSSSDQELC FDLLEEWAEPAALSS PVV+ PP   PPP  P   PPAPNFRVPP
Subjt:  SPTPTSLPPLFSPDAFTPSPSPP-------PPSSSDQELCNFDLLEEWAEPAALSSCPVVNPPPSPVPPP--PPTPPPAPNFRVPP

TrEMBL top hitse value%identityAlignment
A0A0A0KCP3 Uncharacterized protein5.0e-1654.17Show/hide
Query:  SSPTREQGRKEVLQISNDSRKIKKPPLPPITAARSTIIRHEYE--DRIIKIKTPVDFTYIVQLLTGDPNRPPPEYPCTCDDDNPDRPLGILSPTPTSL--
        S P RE GRK+VLQIS DS+ IKKPPL P       +IR++YE   +II +KT VDFTYIVQLLTGDPN PPP YPC C      R L  LSP P     
Subjt:  SSPTREQGRKEVLQISNDSRKIKKPPLPPITAARSTIIRHEYE--DRIIKIKTPVDFTYIVQLLTGDPNRPPPEYPCTCDDDNPDRPLGILSPTPTSL--

Query:  PPLFSPDAFTPSPSPPPPSS
        PP     +    PS PPPS+
Subjt:  PPLFSPDAFTPSPSPPPPSS

A0A5A7UXK4 Uncharacterized protein1.7e-3257.22Show/hide
Query:  MSSWSSPTREQGRKEVLQISNDSRKIKKPPLPPITAARSTIIRHEYEDRIIKIKTPVDFTYIVQLLTGDPNRPPPEYPCTCDD----DNP----DRPLGI
        MSS   P  E G K +LQISN+SR IKKPPLP  T     ++++E E RII ++TP DF YIVQLLTGDPNRPPP YPC CD     +NP    D P GI
Subjt:  MSSWSSPTREQGRKEVLQISNDSRKIKKPPLPPITAARSTIIRHEYEDRIIKIKTPVDFTYIVQLLTGDPNRPPPEYPCTCDD----DNP----DRPLGI

Query:  LSPTPTSLPPLFSPDAFTPSPSPPPPSSSDQELCNFDLLEEW-AEPAALS-SCPVVNPPPSPVPPPPPTPPPAPNFRVPP
        LSP PTSL PL SP  FTP      PSS DQ+  +FDLL+E   EP  LS S PV+N  PSP PPP P P P P FRV P
Subjt:  LSPTPTSLPPLFSPDAFTPSPSPPPPSSSDQELCNFDLLEEW-AEPAALS-SCPVVNPPPSPVPPPPPTPPPAPNFRVPP

A0A6J1H6R4 extensin-like1.9e-1041.5Show/hide
Query:  EQGRKEVLQISNDSRKIKKPPLPPITA-ARSTIIRHEYEDRIIKIKTPVDFTYIVQLLTGDPNRPPPEYPCTCDDDNPDRPLGILSPTPTSLPPLFSPDA
        E+  ++ LQIS  SR IKKPPLPP +A  R  II+++ + +II +KTP +F YIVQLLTG PN PPP        D  D P  +LSP     PP   PD 
Subjt:  EQGRKEVLQISNDSRKIKKPPLPPITA-ARSTIIRHEYEDRIIKIKTPVDFTYIVQLLTGDPNRPPPEYPCTCDDDNPDRPLGILSPTPTSLPPLFSPDA

Query:  FTPSPSPPPPSSSDQELCNFDLLEEWAEPAALSSCPVVNPPPSPVPP
           S   PPP    +E+  +D   +W EP+           P P+PP
Subjt:  FTPSPSPPPPSSSDQELCNFDLLEEWAEPAALSSCPVVNPPPSPVPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCTTGGAGTTCTCCGACGAGGGAGCAGGGACGAAAAGAAGTACTCCAAATCTCCAATGATTCCCGAAAGATCAAGAAGCCCCCACTGCCGCCGATAACGGCGGC
GCGGTCGACGATCATAAGGCACGAGTACGAGGACCGGATCATTAAAATAAAGACCCCCGTAGACTTCACCTACATCGTCCAACTCCTCACCGGCGACCCCAATCGTCCGC
CACCAGAATACCCTTGTACTTGTGACGACGACAATCCTGACCGCCCACTAGGGATTCTCTCCCCGACTCCGACTTCTCTTCCCCCACTTTTTTCTCCCGATGCTTTTACT
CCGTCGCCGTCTCCTCCGCCGCCGTCTTCGTCTGACCAAGAACTCTGTAATTTTGATTTACTAGAAGAATGGGCAGAGCCGGCGGCATTATCATCTTGCCCTGTTGTTAA
TCCTCCACCATCACCGGTCCCGCCTCCGCCTCCGACGCCGCCACCCGCTCCCAATTTCAGAGTTCCTCCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCTTGGAGTTCTCCGACGAGGGAGCAGGGACGAAAAGAAGTACTCCAAATCTCCAATGATTCCCGAAAGATCAAGAAGCCCCCACTGCCGCCGATAACGGCGGC
GCGGTCGACGATCATAAGGCACGAGTACGAGGACCGGATCATTAAAATAAAGACCCCCGTAGACTTCACCTACATCGTCCAACTCCTCACCGGCGACCCCAATCGTCCGC
CACCAGAATACCCTTGTACTTGTGACGACGACAATCCTGACCGCCCACTAGGGATTCTCTCCCCGACTCCGACTTCTCTTCCCCCACTTTTTTCTCCCGATGCTTTTACT
CCGTCGCCGTCTCCTCCGCCGCCGTCTTCGTCTGACCAAGAACTCTGTAATTTTGATTTACTAGAAGAATGGGCAGAGCCGGCGGCATTATCATCTTGCCCTGTTGTTAA
TCCTCCACCATCACCGGTCCCGCCTCCGCCTCCGACGCCGCCACCCGCTCCCAATTTCAGAGTTCCTCCGTAG
Protein sequenceShow/hide protein sequence
MSSWSSPTREQGRKEVLQISNDSRKIKKPPLPPITAARSTIIRHEYEDRIIKIKTPVDFTYIVQLLTGDPNRPPPEYPCTCDDDNPDRPLGILSPTPTSLPPLFSPDAFT
PSPSPPPPSSSDQELCNFDLLEEWAEPAALSSCPVVNPPPSPVPPPPPTPPPAPNFRVPP