; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10004007 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10004007
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionextensin-3-like
Genome locationChr08:12688214..12688684
RNA-Seq ExpressionHG10004007
SyntenyHG10004007
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058946.1 extensin-3-like [Cucumis melo var. makuwa]3.6e-2359.52Show/hide
Query:  MPLLSLNLPSNFAAHHIHP---SPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT-SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLS
        MPLLS NLPSNFA H+I P   SPPS+    PPTT+PIVPY+PFI PP P KK  KHT SP     +  GRPIVPYYP+KF PPP  K  +PPP YHV  
Subjt:  MPLLSLNLPSNFAAHHIHP---SPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT-SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLS

Query:  PPASPQSAKKHYISQARRSPPPPPPK
        P   PQ AKK ++S AR++ P PPP+
Subjt:  PPASPQSAKKHYISQARRSPPPPPPK

KAA0058948.1 extensin-3-like [Cucumis melo var. makuwa]2.2e-2061.9Show/hide
Query:  PPTTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSPPASPQSAKKHYISQARRSPPPPPPKLPP
        P  TRPIVPY+PFIFPP   K   +HT    PLPP  Q   RPIVPYYP+KFPPPPS K+ NPP SYH   PP  P  AKK Y+S+ RR+ PPPPPK  P
Subjt:  PPTTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSPPASPQSAKKHYISQARRSPPPPPPKLPP

Query:  YQWPR
        YQWP+
Subjt:  YQWPR

KAE8647164.1 hypothetical protein Csa_018816, partial [Cucumis sativus]1.7e-2558.65Show/hide
Query:  MPLLSLNLPSNFAAHHIHPSPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSP
        M LLSLNLPSN A H I PS    P L PP TRPIVP++PF F P P +K ++HT    P PP+ Q   RPIVPY+P+KFPPPPS K+ NPPPSYH   P
Subjt:  MPLLSLNLPSNFAAHHIHPSPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSP

Query:  PASPQSAKKHYISQARRSPPPPPPKLPPYQWPR
        PA    A+K Y+S+ RR+ PPPPP + PYQWP+
Subjt:  PASPQSAKKHYISQARRSPPPPPPKLPPYQWPR

TYK10982.1 extensin-3-like [Cucumis melo var. makuwa]3.6e-2359.52Show/hide
Query:  MPLLSLNLPSNFAAHHIHP---SPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT-SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLS
        MPLLS NLPSNFA H+I P   SPPS+    PPTT+PIVPY+PFI PP P KK  KHT SP     +  GRPIVPYYP+KF PPP  K  +PPP YHV  
Subjt:  MPLLSLNLPSNFAAHHIHP---SPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT-SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLS

Query:  PPASPQSAKKHYISQARRSPPPPPPK
        P   PQ AKK ++S AR++ P PPP+
Subjt:  PPASPQSAKKHYISQARRSPPPPPPK

XP_008466986.1 PREDICTED: extensin-3-like, partial [Cucumis melo]8.9e-3064.39Show/hide
Query:  MESHNPIFVFFLLLIMPLLSLNLPSNFAAHHIHPSPPSLPLLPPP---TTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPP
        MESHNPIFVFFL +I+PLLSLNLPSNFAAH+I    PS  L PPP    TRPIVPY+PFIFPP   K   +HT    PLPP  Q   RPIVPYYP+KFPP
Subjt:  MESHNPIFVFFLLLIMPLLSLNLPSNFAAHHIHPSPPSLPLLPPP---TTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPP

Query:  PPSSKRPNPPPSYHVLSPPASPQSAKKHYISQ
        PPS K+ NPP SYH   PP  P  AKK Y+S+
Subjt:  PPSSKRPNPPPSYHVLSPPASPQSAKKHYISQ

TrEMBL top hitse value%identityAlignment
A0A0A0KD80 Uncharacterized protein9.0e-3661.01Show/hide
Query:  MESHNPIFVFFLLLIMPLLSLNLPSNFAAHHIHPSPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPS
        MES NPIFVFFL +IM LLSLNLPSN A H I PS    P L PP TRPIVP++PF F P P +K ++HT    P PP+ Q   RPIVPY+P+KFPPPPS
Subjt:  MESHNPIFVFFLLLIMPLLSLNLPSNFAAHHIHPSPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPS

Query:  SKRPNPPPSYHVLSPPASPQSAKKHYISQARRSPPPPPPKLPPYQWPREPLRGSPPPPF
         K+ NPPPSYH   PPA    A+K Y+S+ RR+ PPPPP + PYQWP+  +R SPPPPF
Subjt:  SKRPNPPPSYHVLSPPASPQSAKKHYISQARRSPPPPPPKLPPYQWPREPLRGSPPPPF

A0A1S3CSG8 extensin-3-like4.3e-3064.39Show/hide
Query:  MESHNPIFVFFLLLIMPLLSLNLPSNFAAHHIHPSPPSLPLLPPP---TTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPP
        MESHNPIFVFFL +I+PLLSLNLPSNFAAH+I    PS  L PPP    TRPIVPY+PFIFPP   K   +HT    PLPP  Q   RPIVPYYP+KFPP
Subjt:  MESHNPIFVFFLLLIMPLLSLNLPSNFAAHHIHPSPPSLPLLPPP---TTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPP

Query:  PPSSKRPNPPPSYHVLSPPASPQSAKKHYISQ
        PPS K+ NPP SYH   PP  P  AKK Y+S+
Subjt:  PPSSKRPNPPPSYHVLSPPASPQSAKKHYISQ

A0A5A7UXN4 Extensin-3-like1.8e-2359.52Show/hide
Query:  MPLLSLNLPSNFAAHHIHP---SPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT-SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLS
        MPLLS NLPSNFA H+I P   SPPS+    PPTT+PIVPY+PFI PP P KK  KHT SP     +  GRPIVPYYP+KF PPP  K  +PPP YHV  
Subjt:  MPLLSLNLPSNFAAHHIHP---SPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT-SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLS

Query:  PPASPQSAKKHYISQARRSPPPPPPK
        P   PQ AKK ++S AR++ P PPP+
Subjt:  PPASPQSAKKHYISQARRSPPPPPPK

A0A5D3CI60 Extensin-3-like1.8e-2359.52Show/hide
Query:  MPLLSLNLPSNFAAHHIHP---SPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT-SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLS
        MPLLS NLPSNFA H+I P   SPPS+    PPTT+PIVPY+PFI PP P KK  KHT SP     +  GRPIVPYYP+KF PPP  K  +PPP YHV  
Subjt:  MPLLSLNLPSNFAAHHIHP---SPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT-SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLS

Query:  PPASPQSAKKHYISQARRSPPPPPPK
        P   PQ AKK ++S AR++ P PPP+
Subjt:  PPASPQSAKKHYISQARRSPPPPPPK

A0A5D3CVI1 Extensin-3-like1.1e-2061.9Show/hide
Query:  PPTTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSPPASPQSAKKHYISQARRSPPPPPPKLPP
        P  TRPIVPY+PFIFPP   K   +HT    PLPP  Q   RPIVPYYP+KFPPPPS K+ NPP SYH   PP  P  AKK Y+S+ RR+ PPPPPK  P
Subjt:  PPTTRPIVPYYPFIFPPHPSKKIYKHT---SPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSPPASPQSAKKHYISQARRSPPPPPPKLPP

Query:  YQWPR
        YQWP+
Subjt:  YQWPR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G13340.1 Leucine-rich repeat (LRR) family protein4.0e-0437.32Show/hide
Query:  LIMPLLSLNLPSNFAAHHIHPSPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHTSPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSPP
        ++ PL   +LPS      I  +PP+L   PPP+  P  P Y    PP P   +Y    P PP          P  P   PPPP    P PPP Y    PP
Subjt:  LIMPLLSLNLPSNFAAHHIHPSPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHTSPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSPP

Query:  ASPQSAKKHYISQARRSPPPPPPKLPPYQWPREPLRGSPPPP
         SP        S     PPPPPP  P Y  P  P+  SPPPP
Subjt:  ASPQSAKKHYISQARRSPPPPPPKLPPYQWPREPLRGSPPPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCTCATAACCCCATTTTTGTGTTCTTCCTCCTCCTCATCATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTCC
GTCGTTGCCGTTATTGCCGCCTCCGACCACTAGACCTATAGTTCCTTATTACCCTTTTATATTCCCTCCTCATCCATCTAAAAAGATTTATAAACACACATCGCCACTGC
CACCGTCGCTGCAGGGATCGGGAAGGCCAATAGTTCCTTATTATCCCTTTAAATTTCCACCACCTCCATCAAGTAAACGCCCCAATCCTCCTCCGAGCTACCATGTCCTT
TCCCCACCCGCGTCACCACAGTCAGCCAAGAAGCATTATATATCTCAGGCAAGGCGGTCACCACCACCGCCACCACCTAAGTTGCCGCCGTATCAGTGGCCAAGGGAGCC
CCTCCGTGGATCGCCCCCACCTCCTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCTCATAACCCCATTTTTGTGTTCTTCCTCCTCCTCATCATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTCC
GTCGTTGCCGTTATTGCCGCCTCCGACCACTAGACCTATAGTTCCTTATTACCCTTTTATATTCCCTCCTCATCCATCTAAAAAGATTTATAAACACACATCGCCACTGC
CACCGTCGCTGCAGGGATCGGGAAGGCCAATAGTTCCTTATTATCCCTTTAAATTTCCACCACCTCCATCAAGTAAACGCCCCAATCCTCCTCCGAGCTACCATGTCCTT
TCCCCACCCGCGTCACCACAGTCAGCCAAGAAGCATTATATATCTCAGGCAAGGCGGTCACCACCACCGCCACCACCTAAGTTGCCGCCGTATCAGTGGCCAAGGGAGCC
CCTCCGTGGATCGCCCCCACCTCCTTTCTAA
Protein sequenceShow/hide protein sequence
MESHNPIFVFFLLLIMPLLSLNLPSNFAAHHIHPSPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHTSPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVL
SPPASPQSAKKHYISQARRSPPPPPPKLPPYQWPREPLRGSPPPPF