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HG10004029 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10004029
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionU6 snRNA-associated Sm-like protein LSm3
Genome locationChr08:12953498..12958198
RNA-Seq ExpressionHG10004029
SyntenyHG10004029
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0033962 - cytoplasmic mRNA processing body assembly (biological process)
GO:0000932 - P-body (cellular component)
GO:0005688 - U6 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:1990726 - Lsm1-7-Pat1 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR034105 - Sm-like protein Lsm3
IPR040002 - U6 snRNA-associated Sm-like protein Lsm3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8497044.1 hypothetical protein CXB51_008282 [Gossypium anomalum]1.0e-2898.59Show/hide
Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

MBA0733595.1 hypothetical protein [Gossypium gossypioides]7.6e-2989.74Show/hide
Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRKFLWGTS
        MATEE+S VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR + + T+
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRKFLWGTS

PPS16970.1 hypothetical protein GOBAR_AA03610 [Gossypium barbadense]5.9e-2987.95Show/hide
Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRKFLWGTSWQLRF
        MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR         LRF
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRKFLWGTSWQLRF

XP_022133461.1 sm-like protein LSM3A [Momordica charantia]4.5e-29100Show/hide
Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

XP_042965374.1 sm-like protein LSM3A isoform X2 [Carya illinoinensis]3.4e-2988.61Show/hide
Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRKFLWGTSW
        MA+EE+S VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR+   G +W
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRKFLWGTSW

TrEMBL top hitse value%identityAlignment
A0A2P5YMZ8 Sm domain-containing protein2.8e-2987.95Show/hide
Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRKFLWGTSWQLRF
        MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR         LRF
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRKFLWGTSWQLRF

A0A6J1BV62 U6 snRNA-associated Sm-like protein LSm32.2e-29100Show/hide
Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

A0A6J1FGZ1 U6 snRNA-associated Sm-like protein LSm32.2e-29100Show/hide
Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

A0A6J1JZX1 U6 snRNA-associated Sm-like protein LSm32.2e-29100Show/hide
Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

A0A7J9BB94 U6 snRNA-associated Sm-like protein LSm33.7e-2989.74Show/hide
Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRKFLWGTS
        MATEE+S VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR + + T+
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRKFLWGTS

SwissProt top hitse value%identityAlignment
P62310 U6 snRNA-associated Sm-like protein LSm37.0e-2584.62Show/hide
Query:  STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETYEEI +
Subjt:  STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

P62311 U6 snRNA-associated Sm-like protein LSm37.0e-2584.62Show/hide
Query:  STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETYEEI +
Subjt:  STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

Q32PE9 U6 snRNA-associated Sm-like protein LSm37.0e-2584.62Show/hide
Query:  STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETYEEI +
Subjt:  STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

Q9C6K5 Sm-like protein LSM3B6.1e-2990.14Show/hide
Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TTVEIDDETYEEIVR
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

Q9LMN4 Sm-like protein LSM3A1.8e-2884.51Show/hide
Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++TT+EIDDETYEEIVR
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

Arabidopsis top hitse value%identityAlignment
AT1G21190.1 Small nuclear ribonucleoprotein family protein1.3e-2984.51Show/hide
Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++TT+EIDDETYEEIVR
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

AT1G76860.1 Small nuclear ribonucleoprotein family protein4.3e-3090.14Show/hide
Query:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TTVEIDDETYEEIVR
Subjt:  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

AT2G47640.1 Small nuclear ribonucleoprotein family protein6.9e-0433.85Show/hide
Query:  NTPKMATEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV
        +T +  TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E+ T V
Subjt:  NTPKMATEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV

AT2G47640.2 Small nuclear ribonucleoprotein family protein6.9e-0435.59Show/hide
Query:  TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV
        TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E+ T V
Subjt:  TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV

AT2G47640.3 Small nuclear ribonucleoprotein family protein6.9e-0435.59Show/hide
Query:  TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV
        TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E+ T V
Subjt:  TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAGGTAAGAGAAAGAACCCTTGAAAGCAAAGCAATCAACAATCAACAAAGAAGCAAAATCACTTATCTGAGCAAAACCCGCCAAGAGCTGAAGACCCAGAAAGG
AGGAAACAGATCCAAGCGCTTATTGGGTGTATGTGGCGATCGAGAAGAGAAAAAGGGAAGGGAGGGATGTGGGTTTTATTGTATTTTAAGAAGGAAAAATGGAAAAATGT
CAAATGGGTGGGCGAAAGAACCGATCAGAGAAGCCAATACGAATGCAGCTCCCAATACACCGAAAATGGCGACCGAAGAAGAAAGCACTGTCAAGGAGCCATTGGATCTC
ATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGT
TGAAGAAATTGTTACTACCGTAGAAATTGATGATGAGACTTATGAAGAGATTGTTCGGAAATTTCTCTGGGGCACCTCATGGCAGCTTCGATTTGCGCCCGACAGGGAAG
ACAATACAGCTCCATTGCCATTTGCCTTCTACTTCATCGATGCCGAGCTCGTTGCTTTGAACTCCCAAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAAGGTAAGAGAAAGAACCCTTGAAAGCAAAGCAATCAACAATCAACAAAGAAGCAAAATCACTTATCTGAGCAAAACCCGCCAAGAGCTGAAGACCCAGAAAGG
AGGAAACAGATCCAAGCGCTTATTGGGTGTATGTGGCGATCGAGAAGAGAAAAAGGGAAGGGAGGGATGTGGGTTTTATTGTATTTTAAGAAGGAAAAATGGAAAAATGT
CAAATGGGTGGGCGAAAGAACCGATCAGAGAAGCCAATACGAATGCAGCTCCCAATACACCGAAAATGGCGACCGAAGAAGAAAGCACTGTCAAGGAGCCATTGGATCTC
ATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGT
TGAAGAAATTGTTACTACCGTAGAAATTGATGATGAGACTTATGAAGAGATTGTTCGGAAATTTCTCTGGGGCACCTCATGGCAGCTTCGATTTGCGCCCGACAGGGAAG
ACAATACAGCTCCATTGCCATTTGCCTTCTACTTCATCGATGCCGAGCTCGTTGCTTTGAACTCCCAAACTTGA
Protein sequenceShow/hide protein sequence
MGKVRERTLESKAINNQQRSKITYLSKTRQELKTQKGGNRSKRLLGVCGDREEKKGREGCGFYCILRRKNGKMSNGWAKEPIREANTNAAPNTPKMATEEESTVKEPLDL
IRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRKFLWGTSWQLRFAPDREDNTAPLPFAFYFIDAELVALNSQT