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HG10004171 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10004171
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionGlycine-rich RNA-binding protein
Genome locationChr08:14402765..14403548
RNA-Seq ExpressionHG10004171
SyntenyHG10004171
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3956006.1 hypothetical protein CMV_018835 [Castanea mollissima]7.4e-2163.86Show/hide
Query:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA
        M+ E E   ++GGLSWSTSDRGLKDAF  FGK+L+A+V+VD+FSGRS GFGF+TF + +AM+ AI EMNG ELD   I V KA
Subjt:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA

MQL78907.1 hypothetical protein [Colocasia esculenta]2.8e-2055.56Show/hide
Query:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKANSRMKAE
        M  +EE  I+VGGLSW T+DR L+DAFS FGK+++A++++DR +GR  GFGF+TFA+ +AMD+AI EM+GQELD  VI V KA  ++ ++
Subjt:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKANSRMKAE

XP_023883521.1 glycine-rich RNA-binding protein RZ1A-like [Quercus suber]7.4e-2163.86Show/hide
Query:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA
        M+ E E   ++GGLSWSTSDRGLKDAF  FGK+L+A+V+VD+FSGRS GFGF+TF + +AM+ AI EMNG ELD   I V KA
Subjt:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA

XP_030550307.1 glycine-rich RNA-binding protein RZ1A [Rhodamnia argentea]1.7e-2062.65Show/hide
Query:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA
        M+ E E   Y+GGLSWSTSDRGLKDAF  FG +L+A+V+VD+FSGRS GFGF+TF   QAM+ AI  MNG +LD   I+V KA
Subjt:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA

XP_030955192.1 glycine-rich RNA-binding protein RZ1A [Quercus lobata]7.4e-2163.86Show/hide
Query:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA
        M+ E E   ++GGLSWSTSDRGLKDAF  FGK+L+A+V+VD+FSGRS GFGF+TF + +AM+ AI EMNG ELD   I V KA
Subjt:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA

TrEMBL top hitse value%identityAlignment
A0A6J1BZF5 glycine-rich RNA-binding protein RZ1C-like1.8e-2066.25Show/hide
Query:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILV
        MA +EE E+YVGGLSW  S+R L+DAFS FG+I+D RVI+DRF  R  G+GFITFA  + MDNAIREMNGQE DQ +I V
Subjt:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILV

A0A7J6H5D5 RRM domain-containing protein1.8e-2061.45Show/hide
Query:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA
        M+ E E   ++GGLSWSTSDRGLKDAF  +GK+++A+V+VD+FSGRS GFGF+TF + +AMD AI  MNG ELD   I V KA
Subjt:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA

A0A7N2L2P6 Uncharacterized protein3.6e-2163.86Show/hide
Query:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA
        M+ E E   ++GGLSWSTSDRGLKDAF  FGK+L+A+V+VD+FSGRS GFGF+TF + +AM+ AI EMNG ELD   I V KA
Subjt:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA

A0A803Q044 Uncharacterized protein1.8e-2061.45Show/hide
Query:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA
        M+ E E   ++GGLSWSTSDRGLKDAF  +GK+++A+V+VD+FSGRS GFGF+TF + +AMD AI  MNG ELD   I V KA
Subjt:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA

W9SH74 Glycine-rich RNA-binding protein2.3e-2061.45Show/hide
Query:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA
        MA E E   ++GGL+WSTSDRGLKDAF  FGK+L+A+V+VD+FSGRS GFGF+TF + +AM+ AI  MNG +LD   I V KA
Subjt:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA

SwissProt top hitse value%identityAlignment
P10979 Glycine-rich RNA-binding, abscisic acid-inducible protein4.7e-1850.59Show/hide
Query:  ACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKANSR
        A + E   +VGGL+W+TS+  L++AF+ +G+ILD++VI DR +GRS GFGF+TF++  +M +AI  MNG+ELD   I V +A SR
Subjt:  ACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKANSR

P49310 Glycine-rich RNA-binding protein GRP1A8.0e-1851.85Show/hide
Query:  EREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKANSR
        E   +VGGL+W+T DR L+ AFS +G++LD+++I DR +GRS GFGF+TF + ++M +AI  MNGQ+LD   I V +A SR
Subjt:  EREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKANSR

Q03251 Glycine-rich RNA-binding protein 89.4e-1954.22Show/hide
Query:  EEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKANSR
        E E   +VGGL+W+T+D  L+  FS FG ++D+++I DR SGRS GFGF+TF + +AM +AI EMNG+ELD  VI V +A SR
Subjt:  EEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKANSR

Q43472 Glycine-rich RNA-binding protein blt8016.1e-1851.85Show/hide
Query:  EREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKANSR
        E   +VGGL W+T D+ L++AFS +G ++D+++I DR +GRS GFGF+TFA+ +AM  AI  MNGQ+LD   I V +A SR
Subjt:  EREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKANSR

Q9LIN3 Glycine-rich RNA-binding protein RZ1A2.2e-2054.22Show/hide
Query:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA
        M+ + E   ++GGL+W+TSDRGL+DAF  +G +++A+V++D+FSGRS GFGFITF   +AMD AI  MNG +LD   I V KA
Subjt:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA

Arabidopsis top hitse value%identityAlignment
AT3G26420.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain1.6e-2154.22Show/hide
Query:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA
        M+ + E   ++GGL+W+TSDRGL+DAF  +G +++A+V++D+FSGRS GFGFITF   +AMD AI  MNG +LD   I V KA
Subjt:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKA

AT4G39260.1 cold, circadian rhythm, and RNA binding 16.7e-2054.22Show/hide
Query:  EEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKANSR
        E E   +VGGL+W+T+D  L+  FS FG ++D+++I DR SGRS GFGF+TF + +AM +AI EMNG+ELD  VI V +A SR
Subjt:  EEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKANSR

AT4G39260.2 cold, circadian rhythm, and RNA binding 16.7e-2054.22Show/hide
Query:  EEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKANSR
        E E   +VGGL+W+T+D  L+  FS FG ++D+++I DR SGRS GFGF+TF + +AM +AI EMNG+ELD  VI V +A SR
Subjt:  EEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKANSR

AT4G39260.3 cold, circadian rhythm, and RNA binding 16.7e-2054.22Show/hide
Query:  EEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKANSR
        E E   +VGGL+W+T+D  L+  FS FG ++D+++I DR SGRS GFGF+TF + +AM +AI EMNG+ELD  VI V +A SR
Subjt:  EEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKANSR

AT5G04280.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain7.4e-1950.57Show/hide
Query:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKANSRM
        MA +E   I+VGGLS   +DR L+ AFS FG ILD +++++R +GRS GFGFITFA+ +AMD +IREM+G++    VI V +A  ++
Subjt:  MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKANSRM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTGCGAAGAAGAACGTGAAATATACGTCGGAGGCTTATCGTGGAGCACCAGTGATCGAGGACTCAAAGACGCCTTCAGCTGTTTTGGAAAAATTCTCGATGCTCG
AGTCATTGTAGACCGATTTTCCGGTCGCTCTCATGGATTTGGATTTATTACATTTGCAAATCTTCAAGCGATGGATAATGCAATCAGGGAAATGAATGGCCAGGAACTTG
ACCAGAGTGTTATCTTAGTGAGAAAGGCTAATTCCAGAATGAAGGCAGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTGCGAAGAAGAACGTGAAATATACGTCGGAGGCTTATCGTGGAGCACCAGTGATCGAGGACTCAAAGACGCCTTCAGCTGTTTTGGAAAAATTCTCGATGCTCG
AGTCATTGTAGACCGATTTTCCGGTCGCTCTCATGGATTTGGATTTATTACATTTGCAAATCTTCAAGCGATGGATAATGCAATCAGGGAAATGAATGGCCAGGAACTTG
ACCAGAGTGTTATCTTAGTGAGAAAGGCTAATTCCAGAATGAAGGCAGAATAA
Protein sequenceShow/hide protein sequence
MACEEEREIYVGGLSWSTSDRGLKDAFSCFGKILDARVIVDRFSGRSHGFGFITFANLQAMDNAIREMNGQELDQSVILVRKANSRMKAE