; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10004249 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10004249
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPsbP domain-containing protein
Genome locationChr08:15223569..15226486
RNA-Seq ExpressionHG10004249
SyntenyHG10004249
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0019898 - extrinsic component of membrane (cellular component)
GO:0005509 - calcium ion binding (molecular function)
GO:0010242 - oxygen evolving activity (molecular function)
InterPro domainsIPR002683 - PsbP, C-terminal
IPR016123 - Mog1/PsbP, alpha/beta/alpha sandwich


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7030019.1 PsbP domain-containing protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-9478.7Show/hide
Query:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPCL-------RVIV---------------------VVAEDYRTYTDEAN
        MASLPSPSAVIQRPRSWRF+ SSLSNG  IPIR+RL VFCSG NI I +Q+PC        R IV                     VVAEDYRTYTDEAN
Subjt:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPCL-------RVIV---------------------VVAEDYRTYTDEAN

Query:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNP
        KF+LVIPQDWQVGNGEPNGFK VTAFFP+ET SSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNP
Subjt:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNP

Query:  GEGRKHLYSAIGMASNGWNNRLYTITGQVG
        GEGR HLYSAIGMASNGW NRLYT+TGQ G
Subjt:  GEGRKHLYSAIGMASNGWNNRLYTITGQVG

XP_022946502.1 psbP domain-containing protein 3, chloroplastic [Cucurbita moschata]3.1e-9478.7Show/hide
Query:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPCL-------RVIV---------------------VVAEDYRTYTDEAN
        MASLPSPSAVIQRPRSWRF+ SSLSNG  IPIR+RL VFCSG NI I +Q+PC        R IV                     VVAEDYRTYTDEAN
Subjt:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPCL-------RVIV---------------------VVAEDYRTYTDEAN

Query:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNP
        KF+LVIPQDWQVGNGEPNGFK VTAFFP+ET SSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNP
Subjt:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNP

Query:  GEGRKHLYSAIGMASNGWNNRLYTITGQVG
        GEGR HLYSAIGMASNGW NRLYT+TGQ G
Subjt:  GEGRKHLYSAIGMASNGWNNRLYTITGQVG

XP_022999754.1 psbP domain-containing protein 3, chloroplastic [Cucurbita maxima]9.1e-9477.83Show/hide
Query:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPC---------------------LRVIV-------VVAEDYRTYTDEAN
        MASLPSPSAVIQRPRSWRF+ SSLSNG  IPIR+RL VFCSG NI I +Q+PC                      + +V       VVAEDYRTYTDEAN
Subjt:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPC---------------------LRVIV-------VVAEDYRTYTDEAN

Query:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNP
        KF+LVIPQDWQVGNGEPNGFK VTAFFP+ET SSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNP
Subjt:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNP

Query:  GEGRKHLYSAIGMASNGWNNRLYTITGQVG
        GEGR HLYSAIGMASNGW NRLYT+TGQ G
Subjt:  GEGRKHLYSAIGMASNGWNNRLYTITGQVG

XP_023546046.1 psbP domain-containing protein 3, chloroplastic [Cucurbita pepo subsp. pepo]1.6e-9378.26Show/hide
Query:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPCL-------RVIV---------------------VVAEDYRTYTDEAN
        MASLPSPSAVIQRPRSWRF+ SSLSNG  IPIR+RL VFCSG NI I +Q+PC        R IV                     VVAEDYRTY DEAN
Subjt:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPCL-------RVIV---------------------VVAEDYRTYTDEAN

Query:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNP
        KF+LVIPQDWQVGNGEPNGFK VTAFFP+ET SSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNP
Subjt:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNP

Query:  GEGRKHLYSAIGMASNGWNNRLYTITGQVG
        GEGR HLYSAIGMASNGW NRLYT+TGQ G
Subjt:  GEGRKHLYSAIGMASNGWNNRLYTITGQVG

XP_038885576.1 psbP domain-containing protein 3, chloroplastic [Benincasa hispida]2.6e-9679.91Show/hide
Query:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPC-----------------------------LRVIVVVAEDYRTYTDEA
        MASLPSPSAVIQRPRSWRFS+SS SNG PIPIRS+L VFCSG+NI+ISNQQ C                             L   V+VAEDYRTYTDEA
Subjt:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPC-----------------------------LRVIVVVAEDYRTYTDEA

Query:  NKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQN
        NKF+L IPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLI+CRSSKGIYYIEYTLQN
Subjt:  NKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQN

Query:  PGEGRKHLYSAIGMASNGWNNRLYTITGQ
        PGE RKHLYSAIGMASNGW NRLYTITGQ
Subjt:  PGEGRKHLYSAIGMASNGWNNRLYTITGQ

TrEMBL top hitse value%identityAlignment
A0A0A0KDI5 PsbP domain-containing protein1.2e-8876.29Show/hide
Query:  MASLPSPSAVIQRPRSWRFSESSLSNGFP-IPIRSRLLVFCS--GSNIHISNQQP-----------------------------CLRVIVVVAEDYRTYT
        MASL SPSAVI RP S RFS+SSLSNGF  IPIRS L VFCS  G++IH SN++P                              L   VVVAEDYRTYT
Subjt:  MASLPSPSAVIQRPRSWRFSESSLSNGFP-IPIRSRLLVFCS--GSNIHISNQQP-----------------------------CLRVIVVVAEDYRTYT

Query:  DEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYT
        DEANKF LVIPQDWQVGNGEPNGFKSVTAFFPQETS+SNVSVVISGLGPD+TRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYT
Subjt:  DEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYT

Query:  LQNPGEGRKHLYSAIGMASNGWNNRLYTITGQ
        LQNPGE RKHLYSAIGM+SNGW NRLYTITGQ
Subjt:  LQNPGEGRKHLYSAIGMASNGWNNRLYTITGQ

A0A6J1DNN6 psbP domain-containing protein 3, chloroplastic isoform X23.1e-8775.54Show/hide
Query:  MASL--PSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLL--VFCSGSNIHISNQQPC-----------------------------LRVIVVVAEDYRTY
        MASL  PSPSAVIQRPR WRF ESSLSNG  I IRS+    V CS +NI IS+ Q C                             L   VVVAED+RTY
Subjt:  MASL--PSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLL--VFCSGSNIHISNQQPC-----------------------------LRVIVVVAEDYRTY

Query:  TDEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEY
        TDEANKF+LVIPQDW VGNGEPNGFKSVTAF+PQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEY
Subjt:  TDEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEY

Query:  TLQNPGEGRKHLYSAIGMASNGWNNRLYTITGQ
        TLQNPGE RKHLYSAIGMASNGW NRLYTITGQ
Subjt:  TLQNPGEGRKHLYSAIGMASNGWNNRLYTITGQ

A0A6J1DRN2 psbP domain-containing protein 3, chloroplastic isoform X12.3e-8775.21Show/hide
Query:  MASL--PSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLL--VFCSGSNIHISNQQPC-----------------------------LRVIVVVAEDYRTY
        MASL  PSPSAVIQRPR WRF ESSLSNG  I IRS+    V CS +NI IS+ Q C                             L   VVVAED+RTY
Subjt:  MASL--PSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLL--VFCSGSNIHISNQQPC-----------------------------LRVIVVVAEDYRTY

Query:  TDEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEY
        TDEANKF+LVIPQDW VGNGEPNGFKSVTAF+PQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEY
Subjt:  TDEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEY

Query:  TLQNPGEGRKHLYSAIGMASNGWNNRLYTITGQV
        TLQNPGE RKHLYSAIGMASNGW NRLYTITGQ+
Subjt:  TLQNPGEGRKHLYSAIGMASNGWNNRLYTITGQV

A0A6J1G3W9 psbP domain-containing protein 3, chloroplastic1.5e-9478.7Show/hide
Query:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPCL-------RVIV---------------------VVAEDYRTYTDEAN
        MASLPSPSAVIQRPRSWRF+ SSLSNG  IPIR+RL VFCSG NI I +Q+PC        R IV                     VVAEDYRTYTDEAN
Subjt:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPCL-------RVIV---------------------VVAEDYRTYTDEAN

Query:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNP
        KF+LVIPQDWQVGNGEPNGFK VTAFFP+ET SSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNP
Subjt:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNP

Query:  GEGRKHLYSAIGMASNGWNNRLYTITGQVG
        GEGR HLYSAIGMASNGW NRLYT+TGQ G
Subjt:  GEGRKHLYSAIGMASNGWNNRLYTITGQVG

A0A6J1KI01 psbP domain-containing protein 3, chloroplastic4.4e-9477.83Show/hide
Query:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPC---------------------LRVIV-------VVAEDYRTYTDEAN
        MASLPSPSAVIQRPRSWRF+ SSLSNG  IPIR+RL VFCSG NI I +Q+PC                      + +V       VVAEDYRTYTDEAN
Subjt:  MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPC---------------------LRVIV-------VVAEDYRTYTDEAN

Query:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNP
        KF+LVIPQDWQVGNGEPNGFK VTAFFP+ET SSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNP
Subjt:  KFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNP

Query:  GEGRKHLYSAIGMASNGWNNRLYTITGQVG
        GEGR HLYSAIGMASNGW NRLYT+TGQ G
Subjt:  GEGRKHLYSAIGMASNGWNNRLYTITGQVG

SwissProt top hitse value%identityAlignment
Q9S720 PsbP domain-containing protein 3, chloroplastic3.5e-6479.29Show/hide
Query:  AEDYRTYTDEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSK
        +E +R YTDE NKF++ IPQDWQVG  EPNGFKS+TAF+PQETS+SNVS+ I+GLGPDFTRMESFGKVE FA+TLVSGLDRSW++P GV AKLID R+SK
Subjt:  AEDYRTYTDEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSK

Query:  GIYYIEYTLQNPGEGRKHLYSAIGMASNGWNNRLYTITGQ
        G YYIEYTLQNPGE RKHLYSAIGMA+NGW NRLYT+TGQ
Subjt:  GIYYIEYTLQNPGEGRKHLYSAIGMASNGWNNRLYTITGQ

Arabidopsis top hitse value%identityAlignment
AT1G76450.1 Photosystem II reaction center PsbP family protein2.5e-6579.29Show/hide
Query:  AEDYRTYTDEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSK
        +E +R YTDE NKF++ IPQDWQVG  EPNGFKS+TAF+PQETS+SNVS+ I+GLGPDFTRMESFGKVE FA+TLVSGLDRSW++P GV AKLID R+SK
Subjt:  AEDYRTYTDEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSK

Query:  GIYYIEYTLQNPGEGRKHLYSAIGMASNGWNNRLYTITGQ
        G YYIEYTLQNPGE RKHLYSAIGMA+NGW NRLYT+TGQ
Subjt:  GIYYIEYTLQNPGEGRKHLYSAIGMASNGWNNRLYTITGQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCCTTCCTTCACCCAGCGCTGTAATCCAACGCCCTCGCTCATGGCGCTTCTCAGAATCATCGCTTTCCAATGGATTCCCCATTCCTATCCGCTCAAGACTCCT
TGTTTTCTGCTCTGGCAGCAACATCCACATTTCCAATCAACAACCCTGTTTACGAGTGATAGTTGTGGTTGCTGAGGATTATCGGACGTATACAGATGAAGCGAATAAGT
TCAAATTGGTGATTCCTCAAGATTGGCAAGTGGGTAACGGTGAACCGAATGGATTCAAGTCGGTTACGGCATTTTTTCCTCAAGAAACTTCAAGTTCCAATGTCAGTGTT
GTAATCTCGGGGCTTGGTCCTGATTTCACGAGAATGGAATCCTTTGGCAAGGTTGAGGAATTTGCTGATACACTGGTGAGCGGATTGGATAGAAGCTGGAAAAGGCCACC
AGGTGTGGCGGCGAAACTTATAGACTGTAGATCGTCAAAAGGGATATATTACATAGAGTACACGCTGCAGAATCCAGGTGAAGGCCGCAAACATTTATACTCTGCAATTG
GGATGGCATCCAATGGCTGGAACAACAGACTCTACACCATAACAGGACAGGTAGGTTGCTCCATTATTTTATTCTTGGCTCAAACTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCCCTTCCTTCACCCAGCGCTGTAATCCAACGCCCTCGCTCATGGCGCTTCTCAGAATCATCGCTTTCCAATGGATTCCCCATTCCTATCCGCTCAAGACTCCT
TGTTTTCTGCTCTGGCAGCAACATCCACATTTCCAATCAACAACCCTGTTTACGAGTGATAGTTGTGGTTGCTGAGGATTATCGGACGTATACAGATGAAGCGAATAAGT
TCAAATTGGTGATTCCTCAAGATTGGCAAGTGGGTAACGGTGAACCGAATGGATTCAAGTCGGTTACGGCATTTTTTCCTCAAGAAACTTCAAGTTCCAATGTCAGTGTT
GTAATCTCGGGGCTTGGTCCTGATTTCACGAGAATGGAATCCTTTGGCAAGGTTGAGGAATTTGCTGATACACTGGTGAGCGGATTGGATAGAAGCTGGAAAAGGCCACC
AGGTGTGGCGGCGAAACTTATAGACTGTAGATCGTCAAAAGGGATATATTACATAGAGTACACGCTGCAGAATCCAGGTGAAGGCCGCAAACATTTATACTCTGCAATTG
GGATGGCATCCAATGGCTGGAACAACAGACTCTACACCATAACAGGACAGGTAGGTTGCTCCATTATTTTATTCTTGGCTCAAACTTTTTAA
Protein sequenceShow/hide protein sequence
MASLPSPSAVIQRPRSWRFSESSLSNGFPIPIRSRLLVFCSGSNIHISNQQPCLRVIVVVAEDYRTYTDEANKFKLVIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSV
VISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGEGRKHLYSAIGMASNGWNNRLYTITGQVGCSIILFLAQTF