; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10004262 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10004262
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr08:15339565..15339963
RNA-Seq ExpressionHG10004262
SyntenyHG10004262
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7030032.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]4.8e-6170.06Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEV-----------------------------------AMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK
        MVKHGCAPNANTY KFITGLCKV CLE+                                   A+ WLDIMIE GHLPHLD CKLLLC LYDEGNNEKAK
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEV-----------------------------------AMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK

Query:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD
        TVFYSLLQCGYNYDE+ WK+LIDGLLKKGLVD CSELFGIME QGCQIHPKTYSMLIEGFDG+QD+D
Subjt:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD

XP_022946433.1 pentatricopeptide repeat-containing protein At5g65560-like isoform X1 [Cucurbita moschata]4.8e-6170.06Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEV-----------------------------------AMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK
        MVKHGCAPNANTY KFITGLCKV CLE+                                   A+ WLDIMIE GHLPHLD CKLLLC LYDEGNNEKAK
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEV-----------------------------------AMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK

Query:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD
        TVFYSLLQCGYNYDE+ WK+LIDGLLKKGLVD CSELFGIME QGCQIHPKTYSMLIEGFDG+QD+D
Subjt:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD

XP_023545913.1 pentatricopeptide repeat-containing protein At5g65560-like isoform X1 [Cucurbita pepo subsp. pepo]3.7e-6170.66Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEV-----------------------------------AMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK
        MVKHGCAPNANTY KFITGLCKV CLE+                                   A+ WLDIMIE GHLPHLD CKLLLC LYDEGNNEKAK
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEV-----------------------------------AMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK

Query:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD
        TVFYSLLQCGYNYDE+ WK+LIDGLLKKGLVD CSELFGIME QGCQIHPKTYSMLIEGFDGIQD+D
Subjt:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD

XP_023545914.1 pentatricopeptide repeat-containing protein At5g65560-like isoform X2 [Cucurbita pepo subsp. pepo]3.7e-6170.66Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEV-----------------------------------AMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK
        MVKHGCAPNANTY KFITGLCKV CLE+                                   A+ WLDIMIE GHLPHLD CKLLLC LYDEGNNEKAK
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEV-----------------------------------AMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK

Query:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD
        TVFYSLLQCGYNYDE+ WK+LIDGLLKKGLVD CSELFGIME QGCQIHPKTYSMLIEGFDGIQD+D
Subjt:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD

XP_038885361.1 pentatricopeptide repeat-containing protein At5g65560 [Benincasa hispida]2.8e-6171.26Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEVA-----------------------------------MMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK
        M KHGCAPNANTYGKFITGLCKVGCLEVA                                     WLDIMIENGHLPHLD CKLLLC LY+EGNNEKAK
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEVA-----------------------------------MMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK

Query:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD
        TVFY LLQCGYNYDE+AWK+LIDGLLKKGLVD CSELFGIMETQGCQIHPKTYSMLIEGFDGI+  D
Subjt:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD

TrEMBL top hitse value%identityAlignment
A0A6J1DI13 pentatricopeptide repeat-containing protein At5g65560 isoform X11.1e-5868.86Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEV-----------------------------------AMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK
        MVKHGC PNANTY KFITGLCKVGCLEV                                   A+ WLDIMIE+G LPHLD CKLL+C LYDEGNNEKAK
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEV-----------------------------------AMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK

Query:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD
        TV YSLLQCGYN DE+AWK+LIDGLLKKGLVD CSELFGIME QGCQIHPKTYSMLIEGFDGI D+D
Subjt:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD

A0A6J1G3S9 pentatricopeptide repeat-containing protein At5g65560-like isoform X12.3e-6170.06Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEV-----------------------------------AMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK
        MVKHGCAPNANTY KFITGLCKV CLE+                                   A+ WLDIMIE GHLPHLD CKLLLC LYDEGNNEKAK
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEV-----------------------------------AMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK

Query:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD
        TVFYSLLQCGYNYDE+ WK+LIDGLLKKGLVD CSELFGIME QGCQIHPKTYSMLIEGFDG+QD+D
Subjt:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD

A0A6J1GH11 pentatricopeptide repeat-containing protein At5g65560-like1.3e-5968.86Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEV-----------------------------------AMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK
        MVK GCAPNANTY KFI+GLCKVGCLEV                                   A+ WLDIM+E+G+LPHLD CKLLLC L+DEGNNEKAK
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEV-----------------------------------AMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK

Query:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD
        TVF+SLLQCGYNYDEIAWK+LIDGLL+KGLVD CSELFGIME QGCQIHPKTYSMLIEGFDGIQD+D
Subjt:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD

A0A6J1KFZ6 pentatricopeptide repeat-containing protein At5g65560-like isoform X18.9e-6170.06Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEV-----------------------------------AMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK
        MVKHGCAPNANTY KFITGLCKV CLE+                                   A+ WLDIMIE GHLPHLD CKLLLC LYDEGNNEKAK
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEV-----------------------------------AMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK

Query:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD
        TVFYSLLQCGYNYDE+ WK+LIDGLLKKGLVD CSELFGIME QGCQIHPKTYSMLIE FDGIQD+D
Subjt:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD

A0A6J1KKQ2 pentatricopeptide repeat-containing protein At5g65560-like8.3e-5968.26Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEV-----------------------------------AMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK
        MVK GCAPNANTYGKFI+GLCKVGCLEV                                   A+ WLD M+E+G+LPHLD CKLLLC L+DEG+NEKAK
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEV-----------------------------------AMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAK

Query:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD
        TVF+SLLQCGYNYDEIAWK+LIDGLL+KGLVD CSELFGIME QGCQIHPKTYSMLIEGFDGIQD+D
Subjt:  TVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEGFDGIQDVD

SwissProt top hitse value%identityAlignment
Q0WPZ6 Pentatricopeptide repeat-containing protein At2g171401.1e-1031.82Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAKTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCS
        M ++G  P+A TYG  + G C VG ++ A   L  M+ N  LP+   C +LL  L+  G   +A+ +   + + GY  D +   I++DGL   G +D   
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAKTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCS

Query:  ELFGIMETQG
        E+   M   G
Subjt:  ELFGIMETQG

Q3EDF8 Pentatricopeptide repeat-containing protein At1g099001.6e-1128.8Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAKTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCS
        M   GC P+  TY   + G+CK G L+ A+ +L+ M  +G  P++    ++L  +   G    A+ +   +L+ G++   + + ILI+ L +KGL+    
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAKTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCS

Query:  ELFGIMETQGCQIHPKTYSMLIEGF
        ++   M   GCQ +  +Y+ L+ GF
Subjt:  ELFGIMETQGCQIHPKTYSMLIEGF

Q9LFF1 Pentatricopeptide repeat-containing protein At3g53700, chloroplastic3.6e-1132Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAKTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCS
        M+   C+PN  TY   I+ LCK   +E A     ++   G LP +     L+  L    N+  A  +F  +   G   DE  + +LID L  KG +D   
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAKTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCS

Query:  ELFGIMETQGCQIHPKTYSMLIEGF
         +   ME  GC     TY+ LI+GF
Subjt:  ELFGIMETQGCQIHPKTYSMLIEGF

Q9LSL9 Pentatricopeptide repeat-containing protein At5g655602.3e-2941.88Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIEN------------------------------------GHLPHLDYCKLLLCVLYDEGNNEKA
        MV+H   PNA +Y K I G+C+VG L VA    D M  N                                    GHLP L+ CK+L+C LY +G  E+ 
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIEN------------------------------------GHLPHLDYCKLLLCVLYDEGNNEKA

Query:  KTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEG
         +VF +LLQCGY  DE+AWKI+IDG+ K+GLV+   ELF +ME  GC+   +TYS+LIEG
Subjt:  KTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEG

Q9SS81 Pentatricopeptide repeat-containing protein At3g090601.6e-1434.62Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAKTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCS
        M K+GC P   +Y   I GLCK G    A  ++  M+ENG  P L    +LLC L  +   + A  +++  LQ G   D +   ILI GL   G +D   
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAKTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCS

Query:  ELFGIMETQGCQIHPKTYSMLIEGFDGIQD
         +   ME + C  +  TY+ L+EGF  + D
Subjt:  ELFGIMETQGCQIHPKTYSMLIEGFDGIQD

Arabidopsis top hitse value%identityAlignment
AT1G09900.1 Pentatricopeptide repeat (PPR-like) superfamily protein1.2e-1228.8Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAKTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCS
        M   GC P+  TY   + G+CK G L+ A+ +L+ M  +G  P++    ++L  +   G    A+ +   +L+ G++   + + ILI+ L +KGL+    
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAKTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCS

Query:  ELFGIMETQGCQIHPKTYSMLIEGF
        ++   M   GCQ +  +Y+ L+ GF
Subjt:  ELFGIMETQGCQIHPKTYSMLIEGF

AT2G17140.1 Pentatricopeptide repeat (PPR) superfamily protein7.5e-1231.82Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAKTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCS
        M ++G  P+A TYG  + G C VG ++ A   L  M+ N  LP+   C +LL  L+  G   +A+ +   + + GY  D +   I++DGL   G +D   
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAKTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCS

Query:  ELFGIMETQG
        E+   M   G
Subjt:  ELFGIMETQG

AT3G09060.1 Pentatricopeptide repeat (PPR) superfamily protein1.1e-1534.62Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAKTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCS
        M K+GC P   +Y   I GLCK G    A  ++  M+ENG  P L    +LLC L  +   + A  +++  LQ G   D +   ILI GL   G +D   
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAKTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCS

Query:  ELFGIMETQGCQIHPKTYSMLIEGFDGIQD
         +   ME + C  +  TY+ L+EGF  + D
Subjt:  ELFGIMETQGCQIHPKTYSMLIEGFDGIQD

AT3G53700.1 Pentatricopeptide repeat (PPR) superfamily protein2.6e-1232Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAKTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCS
        M+   C+PN  TY   I+ LCK   +E A     ++   G LP +     L+  L    N+  A  +F  +   G   DE  + +LID L  KG +D   
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAKTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCS

Query:  ELFGIMETQGCQIHPKTYSMLIEGF
         +   ME  GC     TY+ LI+GF
Subjt:  ELFGIMETQGCQIHPKTYSMLIEGF

AT5G65560.1 Pentatricopeptide repeat (PPR) superfamily protein1.6e-3041.88Show/hide
Query:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIEN------------------------------------GHLPHLDYCKLLLCVLYDEGNNEKA
        MV+H   PNA +Y K I G+C+VG L VA    D M  N                                    GHLP L+ CK+L+C LY +G  E+ 
Subjt:  MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIEN------------------------------------GHLPHLDYCKLLLCVLYDEGNNEKA

Query:  KTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEG
         +VF +LLQCGY  DE+AWKI+IDG+ K+GLV+   ELF +ME  GC+   +TYS+LIEG
Subjt:  KTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQGCQIHPKTYSMLIEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCAAGCATGGGTGTGCACCTAATGCTAATACTTATGGAAAGTTTATTACAGGTCTTTGCAAGGTTGGATGCTTGGAAGTAGCGATGATGTGGTTAGACATCATGAT
AGAGAATGGGCATTTACCACATTTAGATTATTGCAAGCTGCTGCTTTGTGTTCTGTATGATGAAGGAAATAATGAGAAAGCAAAAACAGTGTTTTATAGTTTACTTCAGT
GTGGATATAATTATGATGAAATAGCTTGGAAAATACTAATTGATGGCTTACTTAAGAAGGGCCTTGTTGATACATGCTCTGAACTATTTGGCATCATGGAGACACAAGGT
TGCCAAATTCATCCTAAGACATATAGTATGTTGATTGAGGGATTCGATGGTATTCAGGATGTCGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCAAGCATGGGTGTGCACCTAATGCTAATACTTATGGAAAGTTTATTACAGGTCTTTGCAAGGTTGGATGCTTGGAAGTAGCGATGATGTGGTTAGACATCATGAT
AGAGAATGGGCATTTACCACATTTAGATTATTGCAAGCTGCTGCTTTGTGTTCTGTATGATGAAGGAAATAATGAGAAAGCAAAAACAGTGTTTTATAGTTTACTTCAGT
GTGGATATAATTATGATGAAATAGCTTGGAAAATACTAATTGATGGCTTACTTAAGAAGGGCCTTGTTGATACATGCTCTGAACTATTTGGCATCATGGAGACACAAGGT
TGCCAAATTCATCCTAAGACATATAGTATGTTGATTGAGGGATTCGATGGTATTCAGGATGTCGATTAA
Protein sequenceShow/hide protein sequence
MVKHGCAPNANTYGKFITGLCKVGCLEVAMMWLDIMIENGHLPHLDYCKLLLCVLYDEGNNEKAKTVFYSLLQCGYNYDEIAWKILIDGLLKKGLVDTCSELFGIMETQG
CQIHPKTYSMLIEGFDGIQDVD