CuGenDBv2

Gene ID	HG10004330
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	leucine-rich repeat extensin-like protein 3
Genome location	Chr08:16066528..16067049
RNA-Seq Expression	HG10004330
Synteny	HG10004330
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0064726.1 classical arabinogalactan protein 9-like [Cucumis melo var. makuwa]

1.1e-39

Show/hide

Query:  QSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------AAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSS
        +SPPPV HVPPLAYFPLNSPPPRPT SPPP           A A +SHSPPPPAF+YYFNLPPPPP+LIPVPVPP+ TAAP GNTN+N+YNYYFYAP SS
Subjt:  QSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------AAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSS

Query:  S--PSLPAAFFGGLFLFHLMLSSW
        S  PSLP AFF GLFLFHL+L SW
Subjt:  S--PSLPAAFFGGLFLFHLMLSSW

XP_008445508.1 PREDICTED: classical arabinogalactan protein 9-like [Cucumis melo]

1.7e-34

73.91

Show/hide

Query:  QSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------AAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSS
        +SPPPV HVPPLAYFPLNSPPPRPT SPPP           A A +SHSPPPPAF+YYFNLPPPPP+LIPVPVPP+ TAAP GNTN+N+YNYYFYAP SS
Subjt:  QSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------AAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSS

Query:  S--PSLPAAFFGGLF
        S  PSLP AFFG  F
Subjt:  S--PSLPAAFFGGLF

XP_011657382.1 extensin [Cucumis sativus]

6.2e-40

Show/hide

Query:  QSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------AAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSS
        +SPPPV HVPPLAYFPLNSPPPRPT SPPP           A A +SHSPPPPAF+YYFNLPPPPP+LIPVPVPP+ TA PHGNTN+N+YNYYFYAP SS
Subjt:  QSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------AAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSS

Query:  S--PSLPAAFFGGLFLFHLMLSSW
        S  PSLP A F GLFLFHLML SW
Subjt:  S--PSLPAAFFGGLFLFHLMLSSW

XP_022132157.1 leucine-rich repeat extensin-like protein 3 [Momordica charantia]

2.4e-28

65.6

Show/hide

Query:  AAQSPPPVTHVPPLAYFPLNSP----PPRPTPS--------PPPAAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAP
        A +SPPP  H PPLAY PLN+P    PPRPTPS        P P  AA SH PPPPAF YYFNLPPPPP+LIPVPVPP  TAAPHGNTN+N+YNYYFYA 
Subjt:  AAQSPPPVTHVPPLAYFPLNSP----PPRPTPS--------PPPAAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAP

Query:  TSSSPSLPAAFFGGLFLFHLMLSSW
         SSS SLPA +   LF+F  M S W
Subjt:  TSSSPSLPAAFFGGLFLFHLMLSSW

XP_023536686.1 leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]

3.5e-27

71.43

Show/hide

Query:  QSPPPVTHVPPLAYFPLNSP--PPRPTPSPPP---AAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSSPSLPA
        +SPPPV H PP+A FPLN P  PPRPTPSPPP    AA +SHSPPPPAFKYYF+LPPPPP+LIP P+PP TTAAPHGNTNA  YNYYFYA  S S + P 
Subjt:  QSPPPVTHVPPLAYFPLNSP--PPRPTPSPPP---AAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSSPSLPA

Query:  AFFGGLFLFHLM
        AF   LFLFHL+
Subjt:  AFFGGLFLFHLM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KD44 Uncharacterized protein

3.0e-40

Show/hide

Query:  QSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------AAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSS
        +SPPPV HVPPLAYFPLNSPPPRPT SPPP           A A +SHSPPPPAF+YYFNLPPPPP+LIPVPVPP+ TA PHGNTN+N+YNYYFYAP SS
Subjt:  QSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------AAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSS

Query:  S--PSLPAAFFGGLFLFHLMLSSW
        S  PSLP A F GLFLFHLML SW
Subjt:  S--PSLPAAFFGGLFLFHLMLSSW

A0A1S3BCX5 classical arabinogalactan protein 9-like

8.4e-35

73.91

Show/hide

Query:  QSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------AAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSS
        +SPPPV HVPPLAYFPLNSPPPRPT SPPP           A A +SHSPPPPAF+YYFNLPPPPP+LIPVPVPP+ TAAP GNTN+N+YNYYFYAP SS
Subjt:  QSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------AAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSS

Query:  S--PSLPAAFFGGLF
        S  PSLP AFFG  F
Subjt:  S--PSLPAAFFGGLF

A0A5A7VEH7 Classical arabinogalactan protein 9-like

5.1e-40

Show/hide

Query:  QSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------AAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSS
        +SPPPV HVPPLAYFPLNSPPPRPT SPPP           A A +SHSPPPPAF+YYFNLPPPPP+LIPVPVPP+ TAAP GNTN+N+YNYYFYAP SS
Subjt:  QSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------AAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSS

Query:  S--PSLPAAFFGGLFLFHLMLSSW
        S  PSLP AFF GLFLFHL+L SW
Subjt:  S--PSLPAAFFGGLFLFHLMLSSW

A0A6J1BT26 leucine-rich repeat extensin-like protein 3

1.2e-28

65.6

Show/hide

Query:  AAQSPPPVTHVPPLAYFPLNSP----PPRPTPS--------PPPAAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAP
        A +SPPP  H PPLAY PLN+P    PPRPTPS        P P  AA SH PPPPAF YYFNLPPPPP+LIPVPVPP  TAAPHGNTN+N+YNYYFYA 
Subjt:  AAQSPPPVTHVPPLAYFPLNSP----PPRPTPS--------PPPAAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAP

Query:  TSSSPSLPAAFFGGLFLFHLMLSSW
         SSS SLPA +   LF+F  M S W
Subjt:  TSSSPSLPAAFFGGLFLFHLMLSSW

A0A6J1KKV8 leucine-rich repeat extensin-like protein 3

6.5e-27

70.54

Show/hide

Query:  QSPPPVTHVPPLAYFPLNSP--PPRPTPSPPP---AAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSSPSLPA
        +SPPPV H PP+A FPLN P  PPRPTPSPPP      A+SHSPPPPAFKYYF+LPPPPP+LIP P+PP TTAAPHGNTNA  YNYYFYA  S S + P 
Subjt:  QSPPPVTHVPPLAYFPLNSP--PPRPTPSPPP---AAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSSPSLPA

Query:  AFFGGLFLFHLM
        AF   LFLFHL+
Subjt:  AFFGGLFLFHLM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G22800.1 Leucine-rich repeat (LRR) family protein

4.4e-04

Show/hide

Query:  SFSCFPARHVVELASLANAAQSPPPVTHVPPLAYFPLNSPPPRPTPSPPPAAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAP
        SFS +P    ++ AS   +  SPPP    PP    P   PPP P P PPP     S  PPPP+   Y   PPPPP + P P  P     P
Subjt:  SFSCFPARHVVELASLANAAQSPPPVTHVPPLAYFPLNSPPPRPTPSPPPAAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPPATTAAP

AT4G18670.1 Leucine-rich repeat (LRR) family protein

1.2e-04

41.98

Show/hide

Query:  PARHVVELASLANAAQSPPPVTHVPPLAYFPLNSPPPRPTP--SPPPAAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPP
        P  H +          SPPP +H P + Y    SPPP PT   +PPP  + A +SPPP    YY+N PPPPP +   P PP
Subjt:  PARHVVELASLANAAQSPPPVTHVPPLAYFPLNSPPPRPTP--SPPPAAAAASHSPPPPAFKYYFNLPPPPPLLIPVPVPP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTGTAAAAGTGCAAAAGGCAAACTCATAACCATCCCCCCAAGTCTCCTTCTCCATTCACAAACCTTCCTCCTTTCTACAACTCAAACACAACTTATTCATTCATGGAA
CATTTCTCTTCCCTTCTCATTCTCCTGTTTTCCAGCTCGCCATGTGGTCGAGCTAGCCTCTTTGGCGAATGCAGCTCAGTCACCCCCGCCTGTGACCCATGTGCCACCAC
TGGCTTACTTTCCACTCAATTCACCCCCACCCCGACCAACCCCCTCTCCACCGCCGGCGGCGGCGGCTGCATCTCATTCCCCGCCGCCTCCCGCATTCAAATATTATTTC
AATTTGCCACCCCCGCCGCCGTTGCTGATTCCAGTACCTGTGCCGCCAGCGACGACGGCGGCGCCTCATGGAAATACGAATGCCAATTCTTATAATTACTACTTTTACGC
TCCGACATCGTCTTCTCCGTCTCTTCCGGCGGCGTTTTTTGGGGGTTTGTTTCTCTTCCATTTGATGTTATCTTCATGGTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MCKSAKGKLITIPPSLLLHSQTFLLSTTQTQLIHSWNISLPFSFSCFPARHVVELASLANAAQSPPPVTHVPPLAYFPLNSPPPRPTPSPPPAAAAASHSPPPPAFKYYF
NLPPPPPLLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSSPSLPAAFFGGLFLFHLMLSSW

HG10004330 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome