; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10004335 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10004335
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCBFD_NFYB_HMF domain-containing protein
Genome locationChr08:16106312..16106734
RNA-Seq ExpressionHG10004335
SyntenyHG10004335
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064731.1 dr1-associated corepressor [Cucumis melo var. makuwa]1.2e-6292.86Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP
        MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALF+VSCATELFLKLLAEKSAEVA EKKRKTVKLEHIR+A KRHRSI DFLLDSLPLPSQPS+AP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES
        AKDENR R VVDKVAP GTRRIDDFFRRP KTTSAETNES
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

XP_008445504.1 PREDICTED: dr1-associated corepressor [Cucumis melo]6.1e-6292.86Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP
        MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVA EKKRKTVKLEHIR+A KRHRSI DFLLDSLPLPSQPS+A 
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES
        AKDENR R VVDKVAP GTRRIDDFFRRP KTTSAETNES
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

XP_022962477.1 DNA polymerase epsilon subunit C [Cucurbita moschata]6.7e-6190Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+EVA EKKRKTVKLEHIRIA KRH+SIGDFLLDSLPLPSQPS+AP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES
        AKDENRTR VVDKVAPEGTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

XP_022997291.1 DNA polymerase epsilon subunit C [Cucurbita maxima]1.5e-6090Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKSAEVA EKKRKTVKLEHIRIA KRH+SI DFLLDSLPLPSQPS+AP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES
        AKDENRTR VVDKVAPEGTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

XP_038884228.1 NCT transcriptional regulatory complex subunit A [Benincasa hispida]4.6e-6292.86Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP
        M EEESG+AIRPEFPTGRVKKIMKLDKDI KVNSEALFLVSCATELFLKLLAEKSAEVA EKKRKTVKLEHIRIA KRHRSI DFLLDSLPLP QPS+AP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES
        AKDENRTRTVVDKV PEGTRRIDDFFRRPAKTTSAE NES
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

TrEMBL top hitse value%identityAlignment
A0A0A0KGV1 CBFD_NFYB_HMF domain-containing protein6.1e-6091.97Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP
        MEEEE GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAE A EKKRKTVKLEHIR+A KRHRSI DFLLDSLPLPSQPS+AP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAET
        AKDENRTR VVDKVAPEGTRRIDDFFRR  KT SAET
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAET

A0A1S3BDL4 dr1-associated corepressor2.9e-6292.86Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP
        MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVA EKKRKTVKLEHIR+A KRHRSI DFLLDSLPLPSQPS+A 
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES
        AKDENR R VVDKVAP GTRRIDDFFRRP KTTSAETNES
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

A0A5A7VG98 Dr1-associated corepressor5.9e-6392.86Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP
        MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALF+VSCATELFLKLLAEKSAEVA EKKRKTVKLEHIR+A KRHRSI DFLLDSLPLPSQPS+AP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES
        AKDENR R VVDKVAP GTRRIDDFFRRP KTTSAETNES
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

A0A6J1HCT3 DNA polymerase epsilon subunit C3.2e-6190Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+EVA EKKRKTVKLEHIRIA KRH+SIGDFLLDSLPLPSQPS+AP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES
        AKDENRTR VVDKVAPEGTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

A0A6J1K737 DNA polymerase epsilon subunit C7.2e-6190Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKSAEVA EKKRKTVKLEHIRIA KRH+SI DFLLDSLPLPSQPS+AP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES
        AKDENRTR VVDKVAPEGTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

SwissProt top hitse value%identityAlignment
B0XTT5 NCT transcriptional regulatory complex subunit A1.7e-0631.9Show/hide
Query:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSL-PLPSQPSEAPAKDENRTR
        ++ +FP  R+K+IM+ D+D+GKV       VS A ELF+  L  K+A+ A ++  K V   H++ A  +   + DFL D +  +P QP+     D++ + 
Subjt:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSL-PLPSQPSEAPAKDENRTR

Query:  TVVDKVAPEGTRRIDD
                 G RR  D
Subjt:  TVVDKVAPEGTRRIDD

Q14919 Dr1-associated corepressor8.3e-0637.33Show/hide
Query:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLD
        FP  R+KKIM+ D++IGKV +    ++S A ELFL+ L +K+ +V   +  KT+   H++   +  +   DFL D
Subjt:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLD

Q2YDP3 Dr1-associated corepressor8.3e-0637.33Show/hide
Query:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLD
        FP  R+KKIM+ D++IGKV +    ++S A ELFL+ L +K+ +V   +  KT+   H++   +  +   DFL D
Subjt:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLD

Q4X095 NCT transcriptional regulatory complex subunit A1.7e-0631.9Show/hide
Query:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSL-PLPSQPSEAPAKDENRTR
        ++ +FP  R+K+IM+ D+D+GKV       VS A ELF+  L  K+A+ A ++  K V   H++ A  +   + DFL D +  +P QP+     D++ + 
Subjt:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSL-PLPSQPSEAPAKDENRTR

Query:  TVVDKVAPEGTRRIDD
                 G RR  D
Subjt:  TVVDKVAPEGTRRIDD

Q9D6N5 Dr1-associated corepressor8.3e-0637.33Show/hide
Query:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLD
        FP  R+KKIM+ D++IGKV +    ++S A ELFL+ L +K+ +V   +  KT+   H++   +  +   DFL D
Subjt:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLD

Arabidopsis top hitse value%identityAlignment
AT1G07980.1 nuclear factor Y, subunit C102.7e-0730.77Show/hide
Query:  EEEESG-EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLP
        EE++ G E  + +FP  R+++IM+ D    ++  +A+FLV+ ATE+F++  +E++ + +V+ K+K +  +H+       +   +FL DS+P
Subjt:  EEEESG-EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLP

AT3G12480.1 nuclear factor Y, subunit C115.4e-0839.73Show/hide
Query:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFL
        FP  R+KKIM+ D+D+GK+      LVS + ELFL+ L +++ E+ +E+  KTV   H++   +R+ ++ DFL
Subjt:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFL

AT5G19490.1 Histone superfamily protein4.5e-0732.38Show/hide
Query:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRT--
        ++  FP  R+KKIM+ D+++GK+      LVS A ELFL+ L   + +V + +  KTV   H++   +   ++ DFL D++        +  +D++ T  
Subjt:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRT--

Query:  RTVVD
        R VVD
Subjt:  RTVVD

AT5G27910.1 nuclear factor Y, subunit C88.6e-0636.79Show/hide
Query:  EFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVD
        + P  R+KKIMK D D+  + SEA  L+S A E+F+  L  +S   A E KR T++  ++  AA     I DFLLD      + S A A D      + D
Subjt:  EFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVD

Query:  KVAPEG
           P G
Subjt:  KVAPEG

AT5G43250.1 nuclear factor Y, subunit C132.1e-3663.31Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP
        MEEEE   +IRPEFP GRVKKIMKLDKDI K+NSEAL +++ +TELFL  LAEKSA V  EKKRKTV L+H+RIA KRH+   DFLLDSLPLP+QP +  
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAP

Query:  AKDENRTRTVVDK---VAPEGTRRIDDFFRR-PAKTTSA
              T++V DK     P GTRRIDDFF +  AKT SA
Subjt:  AKDENRTRTVVDK---VAPEGTRRIDDFFRR-PAKTTSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAAGAGGAATCCGGGGAGGCTATCCGGCCGGAGTTTCCGACGGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGATATTGGCAAAGTGAATTCAGAAGCCTT
GTTTCTAGTCTCATGCGCCACCGAGCTCTTCCTTAAGCTTCTCGCTGAAAAATCTGCCGAAGTCGCTGTCGAGAAGAAACGGAAGACCGTGAAACTTGAACACATCCGAA
TCGCCGCCAAAAGGCATCGATCGATCGGTGATTTTCTCCTTGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGAGGCGCCGGCGAAGGACGAGAATCGCACTCGCACTGTC
GTTGATAAAGTGGCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGCCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAAGAGGAATCCGGGGAGGCTATCCGGCCGGAGTTTCCGACGGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGATATTGGCAAAGTGAATTCAGAAGCCTT
GTTTCTAGTCTCATGCGCCACCGAGCTCTTCCTTAAGCTTCTCGCTGAAAAATCTGCCGAAGTCGCTGTCGAGAAGAAACGGAAGACCGTGAAACTTGAACACATCCGAA
TCGCCGCCAAAAGGCATCGATCGATCGGTGATTTTCTCCTTGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGAGGCGCCGGCGAAGGACGAGAATCGCACTCGCACTGTC
GTTGATAAAGTGGCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGCCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCATAG
Protein sequenceShow/hide protein sequence
MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTV
VDKVAPEGTRRIDDFFRRPAKTTSAETNES