CuGenDBv2

Gene ID	HG10004410
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Nudix hydrolase 16
Genome location	Chr08:16709461..16711585
RNA-Seq Expression	HG10004410
Synteny	HG10004410
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	IPR000086 - NUDIX hydrolase domain IPR015797 - NUDIX hydrolase-like domain superfamily IPR020084 - NUDIX hydrolase, conserved site

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598656.1 RNA pseudouridine synthase 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

1.6e-36

91.11

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Query:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM
        MSDLVARTGRHQQRYDAGCRLIAG     YRSSDGSSDE+SDK VEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRG+LM
Subjt:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM

XP_008445383.1 PREDICTED: nudix hydrolase 16, mitochondrial isoform X1 [Cucumis melo]

5.5e-37

93.33

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Query:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM
        MSDLVARTGRHQQRYDAGCRLIAG     YRSSDGSSDEISDK VEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM
Subjt:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM

XP_011657455.1 nudix hydrolase 16, mitochondrial isoform X2 [Cucumis sativus]

5.5e-37

93.33

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Query:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM
        MSDLVARTGRHQQRYDAGCRLIAG     YRSSDGSSDEISDK VEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM
Subjt:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM

XP_022961746.1 nudix hydrolase 16, mitochondrial-like isoform X1 [Cucurbita moschata]

1.2e-36

92.22

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Query:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM
        MSDLVARTGRHQQRYDAGCRLIAG     YRSSDGSSDEISDK VEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRG+LM
Subjt:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM

XP_038886652.1 nudix hydrolase 16, mitochondrial isoform X2 [Benincasa hispida]

5.5e-37

93.33

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Query:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM
        MSDLVARTGRHQQRYDAGCRLIAG     YRSSDGSSDEISDK VEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM
Subjt:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BDF1 nudix hydrolase 16, mitochondrial isoform X1

2.6e-37

93.33

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Query:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM
        MSDLVARTGRHQQRYDAGCRLIAG     YRSSDGSSDEISDK VEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM
Subjt:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM

A0A5A7VFY1 Nudix hydrolase 16

2.6e-37

93.33

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Query:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM
        MSDLVARTGRHQQRYDAGCRLIAG     YRSSDGSSDEISDK VEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM
Subjt:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM

A0A6J1HB74 nudix hydrolase 16, mitochondrial-like isoform X1

5.9e-37

92.22

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Query:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM
        MSDLVARTGRHQQRYDAGCRLIAG     YRSSDGSSDEISDK VEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRG+LM
Subjt:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM

A0A6J1K726 nudix hydrolase 16, mitochondrial-like isoform X1

1.0e-36

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Query:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM
        MSDLVARTGRHQQRYDAGCRL+AG     YRSSDGSSDE+SDK VEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRG+LM
Subjt:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM

A0A6J1KKB0 nudix hydrolase 16, mitochondrial-like

8.5e-36

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Query:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM
        MSDLVARTGR QQRYDAGCRLIAG     YRSS+GSSDE+SDK VEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM
Subjt:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM

SwissProt top hits

e value

%identity

Alignment

Q52K88 Nudix hydrolase 13, mitochondrial

1.9e-16

54.95

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Query:  MSDLVARTGRHQQRYDAGCRLIAG---YR-SSDGSSDEIS---DKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGEL
        MS+L ARTGR  QRYD   RL++G   YR   D   D  S   + +++VLMI +P+   L+FPKGGWE+DETV EAA REA+EEAGV+G L
Subjt:  MSDLVARTGRHQQRYDAGCRLIAG---YR-SSDGSSDEIS---DKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGEL

Q93ZY7 Nudix hydrolase 12, mitochondrial

1.2e-15

52.17

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Query:  MSDLVARTGRHQQRYDAGCRLIAG---YRSSDGSSDEISD-----KEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGEL
        MS L +RTGR +QRYD   RL++G   YR       E         ++EVLM+ +P+   L+FPKGGWE+DETV EAA REAIEEAGV+G L
Subjt:  MSDLVARTGRHQQRYDAGCRLIAG---YRSSDGSSDEISD-----KEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGEL

Q9LE73 Nudix hydrolase 4

1.5e-16

52.27

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Query:  LVARTGRHQQRYD-AGCRLIAG---YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELMVK
        LV+RTGR  QRYD AG R + G   YR      + +  + ++VL++    G G+LFPKGGWE DE++EEAA+RE IEEAGV GEL  K
Subjt:  LVARTGRHQQRYD-AGCRLIAG---YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELMVK

Q9LHK1 Nudix hydrolase 16, mitochondrial

5.0e-25

66.67

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Query:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM
        M DLVARTGR QQRY+ G RL+AG     Y +SD   +  S K ++VLMI + SGPGLLFPKGGWENDETV EAA REA+EEAGVRG LM
Subjt:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM

Q9LQU5 Nudix hydrolase 18, mitochondrial

9.4e-16

55.95

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Query:  LVARTGRHQQRYDAGCRLIAG---YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGEL
        LV+RTGR  QRY+ G R + G   YR    S   ISD E EVL+I +  G  L+FPKGGWE DE+VEEAA RE++EEAGV G +
Subjt:  LVARTGRHQQRYDAGCRLIAG---YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGEL

Arabidopsis top hits

e value

%identity

Alignment

AT1G18300.1 nudix hydrolase homolog 4

1.0e-17

52.27

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Query:  LVARTGRHQQRYD-AGCRLIAG---YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELMVK
        LV+RTGR  QRYD AG R + G   YR      + +  + ++VL++    G G+LFPKGGWE DE++EEAA+RE IEEAGV GEL  K
Subjt:  LVARTGRHQQRYD-AGCRLIAG---YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELMVK

AT3G12600.1 nudix hydrolase homolog 16

3.5e-26

66.67

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Query:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM
        M DLVARTGR QQRY+ G RL+AG     Y +SD   +  S K ++VLMI + SGPGLLFPKGGWENDETV EAA REA+EEAGVRG LM
Subjt:  MSDLVARTGRHQQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM

AT3G12600.2 nudix hydrolase homolog 16

4.5e-21

63.29

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Query:  QQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM
        +QRY+ G RL+AG     Y +SD   +  S K ++VLMI + SGPGLLFPKGGWENDETV EAA REA+EEAGVRG LM
Subjt:  QQRYDAGCRLIAG-----YRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELM

AT3G26690.1 nudix hydrolase homolog 13

1.4e-17

54.95

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Query:  MSDLVARTGRHQQRYDAGCRLIAG---YR-SSDGSSDEIS---DKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGEL
        MS+L ARTGR  QRYD   RL++G   YR   D   D  S   + +++VLMI +P+   L+FPKGGWE+DETV EAA REA+EEAGV+G L
Subjt:  MSDLVARTGRHQQRYDAGCRLIAG---YR-SSDGSSDEIS---DKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGEL

AT3G26690.2 nudix hydrolase homolog 13

1.4e-17

54.95

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Query:  MSDLVARTGRHQQRYDAGCRLIAG---YR-SSDGSSDEIS---DKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGEL
        MS+L ARTGR  QRYD   RL++G   YR   D   D  S   + +++VLMI +P+   L+FPKGGWE+DETV EAA REA+EEAGV+G L
Subjt:  MSDLVARTGRHQQRYDAGCRLIAG---YR-SSDGSSDEIS---DKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGEL

Sequences

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CDS sequence

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ATGTCTGATTTGGTGGCCCGCACTGGACGGCATCAGCAGCGGTACGATGCCGGTTGTCGCCTTATTGCTGGGTATAGAAGTTCCGATGGCAGTAGTGATGAAATTTCAGA
TAAAGAAGTGGAGGTGCTTATGATTGACACACCTAGTGGACCGGGCCTCTTGTTCCCAAAGGGAGGCTGGGAGAATGACGAGACAGTGGAGGAGGCTGCTGTAAGGGAAG
CTATTGAAGAAGCTGGTGTTCGTGGTGAACTTATGGTGAAATAG

mRNA sequence

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Protein sequence

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MSDLVARTGRHQQRYDAGCRLIAGYRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELMVK

HG10004410 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome