CuGenDBv2

Gene ID	HG10004501
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ribosomal RNA small subunit methyltransferase A
Genome location	Chr08:17719755..17723150
RNA-Seq Expression	HG10004501
Synteny	HG10004501
Gene Ontology terms	GO:0032259 - methylation (biological process) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0065096.1 Ribosomal RNA small subunit methyltransferase A [Cucumis melo var. makuwa]

2.1e-82

96.82

Show/hide

Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRET TL FPLVNGANISSSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQ
        GWSEPHGPGFQSDD+SDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAG+
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQ

XP_004152600.1 uncharacterized protein LOC101213956 [Cucumis sativus]

1.8e-81

97.42

Show/hide

Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRET TL FPLVNGAN+SSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        GWSEPHGPGFQSDD+SDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA

XP_008444920.1 PREDICTED: uncharacterized protein LOC103488121 [Cucumis melo]

1.8e-81

96.77

Show/hide

Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRET TL FPLVNGANISSSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        GWSEPHGPGFQSDD+SDNSFAVLVPCYGRIYNDFVDETKNSILSA+GNINDSFSA
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA

XP_022997278.1 uncharacterized protein LOC111492231 isoform X1 [Cucurbita maxima]

3.8e-76

91.72

Show/hide

Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRET TL F LVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQ
        GWSEPHGPGFQSDDDSDNSFAVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS  +
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQ

XP_038886443.1 uncharacterized protein LOC120076637 [Benincasa hispida]

1.0e-81

98.06

Show/hide

Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRET TL FPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        GWSEPHGPGFQSDD+SDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LLD0 Uncharacterized protein

7.8e-83

93.87

Show/hide

Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRET TL FPLVNGAN+SSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQMAAVSP
        GWSEPHGPGFQSDD+SDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA      SP
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQMAAVSP

A0A1S3BB05 uncharacterized protein LOC103488121

8.6e-82

96.77

Show/hide

Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRET TL FPLVNGANISSSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        GWSEPHGPGFQSDD+SDNSFAVLVPCYGRIYNDFVDETKNSILSA+GNINDSFSA
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA

A0A5A7VFJ3 Ribosomal RNA small subunit methyltransferase A

1.0e-82

96.82

Show/hide

Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRET TL FPLVNGANISSSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQ
        GWSEPHGPGFQSDD+SDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAG+
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQ

A0A6J1HCV2 uncharacterized protein LOC111462457 isoform X1

1.9e-76

91.72

Show/hide

Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRET TL F LVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQ
        GWSEPHGPGFQSDDDSDNSFAVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS  +
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQ

A0A6J1KDE3 uncharacterized protein LOC111492231 isoform X1

1.9e-76

91.72

Show/hide

Query:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRET TL F LVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQ
        GWSEPHGPGFQSDDDSDNSFAVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS  +
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G38060.1 unknown protein

2.3e-10

Show/hide

Query:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAG
        SGSES      D  +WS+GW+EPHGP FQSDD+ +D  F VLVPCY R   +      N +LSAV N+ +    G
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAG

AT4G38060.2 unknown protein

2.3e-10

51.47

Show/hide

Query:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNI
        SGSES      D  +WS+GW+EPHGP FQSDD+ +D  F VLVPCY R   +      N +LSAV N+
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNI

AT5G65480.1 unknown protein

4.5e-14

36.24

Show/hide

Query:  MSVAFPQLSWWLWSG---KHKEPRSS--NGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDD
        M+V+FP+L  WL  G   K +E + S   G S+L+ SL    ++T T         + SSS ++ KR W  R       E D +      G V   E DD
Subjt:  MSVAFPQLSWWLWSG---KHKEPRSS--NGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDD

Query:  SDWSIGWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILS
         +WSIGW EPHGPGF+++DD    F VLVP Y ++ +   ++  N   S
Subjt:  SDWSIGWSEPHGPGFQSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCTGTGGCATTTCCCCAACTCTCATGGTGGTTATGGAGTGGGAAGCATAAAGAACCTCGAAGCTCTAATGGTGGGTCTGCTTTAAATGCTTCACTAGATACAGCCAA
CCGGGAAACACATACTCTAAATTTTCCTTTAGTTAATGGGGCCAACATTTCATCCTCATCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGAAAAATTGATA
GGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAGCCCCATGGACCTGGATTC
CAAAGCGATGATGACTCAGATAACAGTTTTGCTGTGCTGGTTCCATGTTATGGACGCATTTACAATGATTTTGTGGACGAGACTAAGAATAGTATCTTAAGCGCCGTTGG
GAACATCAATGATAGCTTTTCTGCTGGTCAAATGGCTGCTGTTTCGCCATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETHTLNFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGF
QSDDDSDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGQMAAVSP

HG10004501 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome