; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10004593 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10004593
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRibonuclease H2 subunit B
Genome locationChr08:18696900..18701336
RNA-Seq ExpressionHG10004593
SyntenyHG10004593
Gene Ontology termsGO:0000455 - enzyme-directed rRNA pseudouridine synthesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0032299 - ribonuclease H2 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0009982 - pseudouridine synthase activity (molecular function)
InterPro domainsIPR019024 - Ribonuclease H2 subunit B, wHTH domain
IPR040456 - Ribonuclease H2 subunit B
IPR041195 - Rnh202, triple barrel domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598802.1 Ribonuclease H2 subunit B, partial [Cucurbita argyrosperma subsp. sororia]4.2e-11980.29Show/hide
Query:  GCSMAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK
        GCSMAWWEGVEETRILIA DHGVKEN TGC LSLRHPKSGNTTCFLYVNE+LEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK
Subjt:  GCSMAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK

Query:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAAD-
        GDDPGKFRQLDDIMFINGYPGYLHLLS+AEKSMQVVCEVKE+GSS+FFRLDDSKVLAWLYHKV  +                         +L  Y  D 
Subjt:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAAD-

Query:  ----FVC---RLNFAEATRKASDSEKPP-NIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK
             +C   +LNFAEATRKASD+EKPP +IENNFDSISQDK+RSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK
Subjt:  ----FVC---RLNFAEATRKASDSEKPP-NIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK

KAG7029739.1 Ribonuclease H2 subunit B [Cucurbita argyrosperma subsp. argyrosperma]8.9e-11780.07Show/hide
Query:  MAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
        MAWWEGVEETRILIA DHGVKEN TGC LSLRHPKSGNTTCFLYVNE+LEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
Subjt:  MAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD

Query:  PGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAAD----
        PGKFRQLDDIMFINGYPGYLHLLS+AEKSMQVVCEVKE+GSS+FFRLDDSKVLAWLYHKV  +                         +L  Y  D    
Subjt:  PGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAAD----

Query:  -FVC---RLNFAEATRKASDSEKPP-NIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK
          +C   +LNFAEATRKASD+EKPP +IENNFDSISQDK+RSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK
Subjt:  -FVC---RLNFAEATRKASDSEKPP-NIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK

XP_022962545.1 ribonuclease H2 subunit B [Cucurbita moschata]5.7e-11680.07Show/hide
Query:  MAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
        MAWWEGVEETRILIA DHGVKEN TGC LSLRHPKSGNTTCFLYVNE+LEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
Subjt:  MAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD

Query:  PGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAAD----
        PGKFRQLDDIMFINGYP YLHLLS+AEKSMQVVCEVKEVGSS+FFRLDDSKVLAWLYHKV  +                         +L  Y  D    
Subjt:  PGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAAD----

Query:  -FVC---RLNFAEATRKASDSEKPP-NIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK
          +C   +LNFAEATRKASD+EKPP +IENNFDSISQDK+RSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK
Subjt:  -FVC---RLNFAEATRKASDSEKPP-NIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK

XP_023546639.1 ribonuclease H2 subunit B [Cucurbita pepo subsp. pepo]6.8e-11780.43Show/hide
Query:  MAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
        MAWWEGVEETRILIA DHGVKEN TGC LSLRHPKSGNTTCFLYVNE+LEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
Subjt:  MAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD

Query:  PGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAAD----
        PGKFRQLDDIMFINGYPGYLHLLS+AEKSMQVVCEVKEVGSS+FFRLDDSKVLAWLYHKV  +                         +L  Y  D    
Subjt:  PGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAAD----

Query:  -FVC---RLNFAEATRKASDSEKPP-NIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK
          +C   +LNFAEATRKASD+EKPP +IENNFDSISQDK+RSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK
Subjt:  -FVC---RLNFAEATRKASDSEKPP-NIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK

XP_038886017.1 ribonuclease H2 subunit B isoform X1 [Benincasa hispida]6.3e-11580.14Show/hide
Query:  MAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
        MAWWEGVEETRILIA DHGVKEN TG  LSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIF EARMKKGDD
Subjt:  MAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD

Query:  PGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAADF---
        PGKFRQLDDIMF+NGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKV  +                         +L  Y  D    
Subjt:  PGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAADF---

Query:  --VC---RLNFAEATRKASDSEKPP-NIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRKR
          +C   +LNFAEATRKASDSEKPP +IENNFDSISQDK RSGAKNTRNGKQ KKPKVETESRNIKDMFSKAIK KR
Subjt:  --VC---RLNFAEATRKASDSEKPP-NIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRKR

TrEMBL top hitse value%identityAlignment
A0A0A0LPA1 Ribonuclease H2 subunit B1.3e-11378.52Show/hide
Query:  GCSMAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK
        GCSMAW EGVEETRILIA DHGVKENVTGCFLSLRHPKSGN TCFLYVNEMLEEIHWFKQSYSSWFLGDYV EDGRLYSATPVDPVFIFLPIFEEARMKK
Subjt:  GCSMAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK

Query:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAAD-
        GDD GKFRQLDDIMFINGYPGYLHLL LAEK MQVVCEVKEVGSSRFFRLDDSKVLAWLYHKV  +                         +L  Y  D 
Subjt:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAAD-

Query:  ----FVC---RLNFAEATRKASDSEK-PPNIENNFDSISQDK----SRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRKR
             +C   +LNFAEATRKASDSE+ P +IENNFDSISQDK    S SGAKNTRNGKQAKKPKVETESRNIKDMFSKA KRKR
Subjt:  ----FVC---RLNFAEATRKASDSEK-PPNIENNFDSISQDK----SRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRKR

A0A1S3BBT5 Ribonuclease H2 subunit B5.2e-11579.64Show/hide
Query:  GCSMAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK
        GCSMAW+EGVEE RILIA DHGVKE  TGCFLSLRHPKSGN TCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK
Subjt:  GCSMAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK

Query:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAAD-
        GDDPGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKV  +                         +L  Y  D 
Subjt:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAAD-

Query:  ----FVC---RLNFAEATRKASDSEK-PPNIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRKR
             +C   +LNFAEATRKASDSEK P +IEN FDSISQDKS S AKNTRNGKQAKKPKVETESRNIKDMFSKA KRKR
Subjt:  ----FVC---RLNFAEATRKASDSEK-PPNIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRKR

A0A1S4DVB3 Ribonuclease H2 subunit B6.4e-11379.29Show/hide
Query:  GCSMAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK
        GCSMAW+EGVEE RILIA DHGVKE  TGCFLSLRHPKSGN TCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARM K
Subjt:  GCSMAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK

Query:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAAD-
        GDDPGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKV  +                         +L  Y  D 
Subjt:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAAD-

Query:  ----FVC---RLNFAEATRKASDSEK-PPNIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRKR
             +C   +LNFAEATRKASDSEK P +IEN FDSISQDKS S AKNTRNGKQAKKPKVETESRNIKDMFSKA KRKR
Subjt:  ----FVC---RLNFAEATRKASDSEK-PPNIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRKR

A0A6J1HFF3 Ribonuclease H2 subunit B2.8e-11680.07Show/hide
Query:  MAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
        MAWWEGVEETRILIA DHGVKEN TGC LSLRHPKSGNTTCFLYVNE+LEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
Subjt:  MAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD

Query:  PGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAAD----
        PGKFRQLDDIMFINGYP YLHLLS+AEKSMQVVCEVKEVGSS+FFRLDDSKVLAWLYHKV  +                         +L  Y  D    
Subjt:  PGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAAD----

Query:  -FVC---RLNFAEATRKASDSEKPP-NIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK
          +C   +LNFAEATRKASD+EKPP +IENNFDSISQDK+RSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK
Subjt:  -FVC---RLNFAEATRKASDSEKPP-NIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK

A0A6J1K9Q1 Ribonuclease H2 subunit B8.9e-11578.99Show/hide
Query:  MAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
        MAWWEGVEETRILIA DHGVKEN TGC LSLRHPKSGNTTCFLYVNE+LEEIHWFKQSYSSWFLGDYVTEDGRLYSATP+DPVFIFLPIFEEARMKKGDD
Subjt:  MAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD

Query:  PGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAAD----
        PGKFRQLDDIMFINGYPGYLHLLS+AEKSMQVVCEVKEVGSS+FFRLDDSKVLAWLYHKV  +                         +L  Y  D    
Subjt:  PGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI-------------------------VLRPYAAD----

Query:  -FVC---RLNFAEATRKASDSEKPP-NIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK
          +C   +LNFAEATR+ASD+EKPP  IENNFDSISQDK+RSGAKNTRNGKQAK  KVETESRNIKDMFSKAIKRK
Subjt:  -FVC---RLNFAEATRKASDSEKPP-NIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK

SwissProt top hitse value%identityAlignment
Q28GD9 Ribonuclease H2 subunit B7.5e-1833.13Show/hide
Query:  GVEETRILIA----SDHGVKENVTGCFLSLRHPKSGNTTCFLYVN--EMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD
        G  E  +L+A    SD     +    F  LR P +   + FL+++  + + E+  F + Y SWF+G  V +DGRL  ATP+DP+F+ L       +K   
Subjt:  GVEETRILIA----SDHGVKENVTGCFLSLRHPKSGNTTCFLYVN--EMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD

Query:  DPGKFRQLDDIMFINGYPGYLHLLSL--AEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKV
        + GKF+ ++ I+    +P    LL      KS+  V E KE+GS +F++    K L WL  KV
Subjt:  DPGKFRQLDDIMFINGYPGYLHLLSL--AEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKV

Q3ZBI3 Ribonuclease H2 subunit B1.2e-1537.23Show/hide
Query:  FLSLRHPKSGNTTCFLY--VNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHLLSL
        F+ L +P SG  T +L+      L EI  FK+   SWF+ + V   G L+ ATPVDP+F+ L    +A   K    GKF+ LD ++  + +P  + LL L
Subjt:  FLSLRHPKSGNTTCFLY--VNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHLLSL

Query:  --AEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKV
           EK +Q V E KEV   ++++    K L WL  KV
Subjt:  --AEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKV

Q5HZP1 Ribonuclease H2 subunit B5.2e-1934.36Show/hide
Query:  GVEETRILIASD--HGVKENVTG--CFLSLRHPKSGNTTCFLYVN--EMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD
        G  E  +L+A +   G  +N++    F+ LR P +     FL++N  + + E+  F + Y SWF+G  V +DGRL  ATP+DP+F+ LP      +K   
Subjt:  GVEETRILIASD--HGVKENVTG--CFLSLRHPKSGNTTCFLYVN--EMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD

Query:  DPGKFRQLDDIMFINGYP--GYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKV
        + GKF+ ++ I+    +P  G L   +   KS+  V E KE+GS +F +    K L WL  KV
Subjt:  DPGKFRQLDDIMFINGYP--GYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKV

Q5TBB1 Ribonuclease H2 subunit B2.3e-1434.03Show/hide
Query:  FLSLRHPKSGNTTCFLY--VNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHLLSL
        F+ L +P SG    +L+    + L E+  FK+ + SWF+   V   G L+ ATPVDP+F+ L       + K D  GKF+ LD ++  N +P  + LL L
Subjt:  FLSLRHPKSGNTTCFLY--VNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHLLSL

Query:  --AEKSMQVVCEVK---EVGSSRFFRLDDSKVLAWLYHKVYSIV
           EK +  V E K   E+ + ++++    K L WL  KV   V
Subjt:  --AEKSMQVVCEVK---EVGSSRFFRLDDSKVLAWLYHKVYSIV

Q80ZV0 Ribonuclease H2 subunit B1.0e-1433.8Show/hide
Query:  FLSLRHPKSGNTTCFL--YVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHLLSL
        F+ L +P SG    +L     + L EI  FK+ + SWF+   V   G L+ ATP+DP+F+ L       + K    GK++ LD ++  + +P    LL  
Subjt:  FLSLRHPKSGNTTCFL--YVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHLLSL

Query:  --AEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSIVL
           EKS++ V E KEV S ++++    K L WL  KV   V+
Subjt:  --AEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSIVL

Arabidopsis top hitse value%identityAlignment
AT4G20325.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).4.9e-7352.17Show/hide
Query:  SMAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD
        S  WWEG E+TR+LIA D G   N  G  L+LRHPKS N TCFL+ NEML+E+ WFKQSY SWFLGDY++EDG LY ATPVDPVFI LPIF+EARMKKG+
Subjt:  SMAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD

Query:  DPGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI------VLRPYAA--------DFV------------
        + GKFRQLD+I+F+ GYPGY HLLSLAEK M++VC+ +EVGS +F+RLD+SKVLAWL  K+Y +      + + YAA        D V            
Subjt:  DPGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSI------VLRPYAA--------DFV------------

Query:  -------CRLNFAEATRKASDSEKPPNIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK
                 L F + T K ++ E  P    N  +++   S     N + GKQ K+ KVET S+NI+DMFS+A K+K
Subjt:  -------CRLNFAEATRKASDSEKPPNIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRK

AT4G20325.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).2.6e-6670.06Show/hide
Query:  SMAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD
        S  WWEG E+TR+LIA D G   N  G  L+LRHPKS N TCFL+ NEML+E+ WFKQSY SWFLGDY++EDG LY ATPVDPVFI LPIF+EARMKKG+
Subjt:  SMAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD

Query:  DPGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWL
        + GKFRQLD+I+F+ GYPGY HLLSLAEK M++VC+ +EVGS +F+RLD+SKVLAWL
Subjt:  DPGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGTTGTTCCATGGCTTGGTGGGAAGGCGTTGAGGAAACTCGTATTCTCATTGCTTCTGATCATGGGGTAAAAGAAAATGTTACTGGATGCTTCCTTTCACTTCGCCATCC
AAAATCAGGAAATACAACGTGTTTCTTATATGTAAATGAGATGCTAGAAGAAATTCACTGGTTTAAGCAGTCATATTCATCGTGGTTTTTGGGAGACTATGTTACTGAAG
ATGGTCGTCTGTATTCTGCCACTCCAGTAGATCCTGTTTTCATTTTCTTGCCCATTTTTGAGGAAGCTAGAATGAAGAAAGGAGATGATCCTGGGAAATTCAGGCAGTTA
GATGACATAATGTTCATCAATGGGTATCCTGGATATCTGCATTTACTGTCTCTTGCAGAGAAGTCAATGCAAGTAGTTTGTGAGGTCAAAGAAGTTGGATCATCTAGGTT
TTTTAGGCTCGATGATTCAAAGGTATTGGCATGGTTATATCACAAGGTGTATTCAATTGTCCTGAGGCCGTACGCTGCTGATTTTGTTTGCAGGTTAAATTTTGCCGAAG
CAACCAGAAAAGCATCGGATTCAGAAAAGCCTCCAAACATAGAGAACAATTTTGATTCTATCTCACAGGATAAGAGTAGGAGTGGTGCAAAGAATACAAGAAATGGAAAG
CAAGCCAAGAAGCCTAAGGTGGAGACAGAATCACGGAACATCAAGGACATGTTTTCAAAGGCTATAAAAAGAAAAAGATGA
mRNA sequenceShow/hide mRNA sequence
GGTTGTTCCATGGCTTGGTGGGAAGGCGTTGAGGAAACTCGTATTCTCATTGCTTCTGATCATGGGGTAAAAGAAAATGTTACTGGATGCTTCCTTTCACTTCGCCATCC
AAAATCAGGAAATACAACGTGTTTCTTATATGTAAATGAGATGCTAGAAGAAATTCACTGGTTTAAGCAGTCATATTCATCGTGGTTTTTGGGAGACTATGTTACTGAAG
ATGGTCGTCTGTATTCTGCCACTCCAGTAGATCCTGTTTTCATTTTCTTGCCCATTTTTGAGGAAGCTAGAATGAAGAAAGGAGATGATCCTGGGAAATTCAGGCAGTTA
GATGACATAATGTTCATCAATGGGTATCCTGGATATCTGCATTTACTGTCTCTTGCAGAGAAGTCAATGCAAGTAGTTTGTGAGGTCAAAGAAGTTGGATCATCTAGGTT
TTTTAGGCTCGATGATTCAAAGGTATTGGCATGGTTATATCACAAGGTGTATTCAATTGTCCTGAGGCCGTACGCTGCTGATTTTGTTTGCAGGTTAAATTTTGCCGAAG
CAACCAGAAAAGCATCGGATTCAGAAAAGCCTCCAAACATAGAGAACAATTTTGATTCTATCTCACAGGATAAGAGTAGGAGTGGTGCAAAGAATACAAGAAATGGAAAG
CAAGCCAAGAAGCCTAAGGTGGAGACAGAATCACGGAACATCAAGGACATGTTTTCAAAGGCTATAAAAAGAAAAAGATGA
Protein sequenceShow/hide protein sequence
GCSMAWWEGVEETRILIASDHGVKENVTGCFLSLRHPKSGNTTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQL
DDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVYSIVLRPYAADFVCRLNFAEATRKASDSEKPPNIENNFDSISQDKSRSGAKNTRNGK
QAKKPKVETESRNIKDMFSKAIKRKR