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HG10004656 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10004656
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein tesmin/TSO1-like CXC 2 isoform X3
Genome locationChr08:19267098..19274817
RNA-Seq ExpressionHG10004656
SyntenyHG10004656
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131783.1 protein tesmin/TSO1-like CXC 2 isoform X1 [Momordica charantia]1.7e-0949.06Show/hide
Query:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS
        S   T++ S    + A   I I P  + PD FSDFV++LFPIEP + D    G        FVFS P    NVES+LLKRT   +SSNTEL AESQE N+
Subjt:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS

Query:  KVSAQT
        K+S QT
Subjt:  KVSAQT

XP_022131784.1 protein tesmin/TSO1-like CXC 2 isoform X2 [Momordica charantia]1.7e-0949.06Show/hide
Query:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS
        S   T++ S    + A   I I P  + PD FSDFV++LFPIEP + D    G        FVFS P    NVES+LLKRT   +SSNTEL AESQE N+
Subjt:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS

Query:  KVSAQT
        K+S QT
Subjt:  KVSAQT

XP_022131785.1 protein tesmin/TSO1-like CXC 2 isoform X3 [Momordica charantia]1.7e-0949.06Show/hide
Query:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS
        S   T++ S    + A   I I P  + PD FSDFV++LFPIEP + D    G        FVFS P    NVES+LLKRT   +SSNTEL AESQE N+
Subjt:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS

Query:  KVSAQT
        K+S QT
Subjt:  KVSAQT

XP_022131786.1 protein tesmin/TSO1-like CXC 2 isoform X4 [Momordica charantia]1.7e-0949.06Show/hide
Query:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS
        S   T++ S    + A   I I P  + PD FSDFV++LFPIEP + D    G        FVFS P    NVES+LLKRT   +SSNTEL AESQE N+
Subjt:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS

Query:  KVSAQT
        K+S QT
Subjt:  KVSAQT

XP_022131787.1 protein tesmin/TSO1-like CXC 2 isoform X5 [Momordica charantia]1.7e-0949.06Show/hide
Query:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS
        S   T++ S    + A   I I P  + PD FSDFV++LFPIEP + D    G        FVFS P    NVES+LLKRT   +SSNTEL AESQE N+
Subjt:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS

Query:  KVSAQT
        K+S QT
Subjt:  KVSAQT

TrEMBL top hitse value%identityAlignment
A0A6J1BQG7 protein tesmin/TSO1-like CXC 2 isoform X48.4e-1049.06Show/hide
Query:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS
        S   T++ S    + A   I I P  + PD FSDFV++LFPIEP + D    G        FVFS P    NVES+LLKRT   +SSNTEL AESQE N+
Subjt:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS

Query:  KVSAQT
        K+S QT
Subjt:  KVSAQT

A0A6J1BQN3 protein tesmin/TSO1-like CXC 2 isoform X38.4e-1049.06Show/hide
Query:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS
        S   T++ S    + A   I I P  + PD FSDFV++LFPIEP + D    G        FVFS P    NVES+LLKRT   +SSNTEL AESQE N+
Subjt:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS

Query:  KVSAQT
        K+S QT
Subjt:  KVSAQT

A0A6J1BR92 protein tesmin/TSO1-like CXC 2 isoform X28.4e-1049.06Show/hide
Query:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS
        S   T++ S    + A   I I P  + PD FSDFV++LFPIEP + D    G        FVFS P    NVES+LLKRT   +SSNTEL AESQE N+
Subjt:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS

Query:  KVSAQT
        K+S QT
Subjt:  KVSAQT

A0A6J1BS03 protein tesmin/TSO1-like CXC 2 isoform X58.4e-1049.06Show/hide
Query:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS
        S   T++ S    + A   I I P  + PD FSDFV++LFPIEP + D    G        FVFS P    NVES+LLKRT   +SSNTEL AESQE N+
Subjt:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS

Query:  KVSAQT
        K+S QT
Subjt:  KVSAQT

A0A6J1BUG8 protein tesmin/TSO1-like CXC 2 isoform X18.4e-1049.06Show/hide
Query:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS
        S   T++ S    + A   I I P  + PD FSDFV++LFPIEP + D    G        FVFS P    NVES+LLKRT   +SSNTEL AESQE N+
Subjt:  STSLTRIPSLKVEMVARPAIPI-PRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPP----NVESNLLKRTHNAQSSNTELVAESQECNS

Query:  KVSAQT
        K+S QT
Subjt:  KVSAQT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACCCTACCTGGCACAGATCCAATCACCAGATTTCCATCCAGGGCGGTTGGAGGCACCGCCGAAGTTAAAGCCTCTCATTCTGGTCAAATCGCCGTCGTAGGCGG
CGGCGGAAGCCTCATCTTTGGAGGCGCCGCACTTGAAGCAGATAGAGCGGCTGGCGAAGTTATGAGCGCCGCAGTTGGCGACGGTGCAGTACCAATCACCAGGGCGGACG
TCGGGGCCGGTAGTGAAACCGAAGGACGAAGAACCAACAGCTCTTCCGCCGCCGTAGCTTCCGCCACCGAAGTCGGCCCTAGGCTCTCCACATCGCTGACACGAATCCCT
TCGTTGAAAGTTGAGATGGTTGCAAGACCTGCAATTCCAATCCCCCGGCCTACTCATCCTGATTGTTTTTCAGACTTCGTTAATAACTTATTTCCGATAGAGCCCGGCAG
GAGTGATTTTGCAGCCCCAGGGTTTACTGGGCTTGAATCCTCTCCTTTTGTCTTTTCTCCTCCAAATGTTGAATCAAATCTTTTGAAAAGGACTCACAATGCTCAGTCGT
CTAATACTGAATTGGTTGCCGAATCACAAGAATGTAACAGTAAGGTGTCTGCACAAACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAACCCTACCTGGCACAGATCCAATCACCAGATTTCCATCCAGGGCGGTTGGAGGCACCGCCGAAGTTAAAGCCTCTCATTCTGGTCAAATCGCCGTCGTAGGCGG
CGGCGGAAGCCTCATCTTTGGAGGCGCCGCACTTGAAGCAGATAGAGCGGCTGGCGAAGTTATGAGCGCCGCAGTTGGCGACGGTGCAGTACCAATCACCAGGGCGGACG
TCGGGGCCGGTAGTGAAACCGAAGGACGAAGAACCAACAGCTCTTCCGCCGCCGTAGCTTCCGCCACCGAAGTCGGCCCTAGGCTCTCCACATCGCTGACACGAATCCCT
TCGTTGAAAGTTGAGATGGTTGCAAGACCTGCAATTCCAATCCCCCGGCCTACTCATCCTGATTGTTTTTCAGACTTCGTTAATAACTTATTTCCGATAGAGCCCGGCAG
GAGTGATTTTGCAGCCCCAGGGTTTACTGGGCTTGAATCCTCTCCTTTTGTCTTTTCTCCTCCAAATGTTGAATCAAATCTTTTGAAAAGGACTCACAATGCTCAGTCGT
CTAATACTGAATTGGTTGCCGAATCACAAGAATGTAACAGTAAGGTGTCTGCACAAACTTAA
Protein sequenceShow/hide protein sequence
MKTLPGTDPITRFPSRAVGGTAEVKASHSGQIAVVGGGGSLIFGGAALEADRAAGEVMSAAVGDGAVPITRADVGAGSETEGRRTNSSSAAVASATEVGPRLSTSLTRIP
SLKVEMVARPAIPIPRPTHPDCFSDFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPPNVESNLLKRTHNAQSSNTELVAESQECNSKVSAQT