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HG10004672 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10004672
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDEAD-box ATP-dependent RNA helicase 56-like
Genome locationChr08:19420346..19420874
RNA-Seq ExpressionHG10004672
SyntenyHG10004672
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585467.1 DEAD-box ATP-dependent RNA helicase 56, partial [Cucurbita argyrosperma subsp. sororia]9.3e-31100Show/hide
Query:  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
        MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
Subjt:  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE

MBA0634761.1 hypothetical protein [Gossypium davidsonii]5.5e-3191.36Show/hide
Query:  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKFLIFILN
        MGETRDN+ YEEELLDYEEEEEKAPDSV AKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKFL   L+
Subjt:  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKFLIFILN

XP_022951402.1 DEAD-box ATP-dependent RNA helicase 56-like [Cucurbita moschata]9.3e-31100Show/hide
Query:  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
        MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
Subjt:  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE

XP_022961952.1 DEAD-box ATP-dependent RNA helicase 56 [Cucurbita moschata]9.3e-31100Show/hide
Query:  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
        MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
Subjt:  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE

XP_023537959.1 DEAD-box ATP-dependent RNA helicase 56-like isoform X1 [Cucurbita pepo subsp. pepo]9.3e-31100Show/hide
Query:  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
        MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
Subjt:  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE

TrEMBL top hitse value%identityAlignment
A0A1S3BC35 DEAD-box ATP-dependent RNA helicase 564.5e-31100Show/hide
Query:  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
        MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
Subjt:  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE

A0A6J1BTR7 DEAD-box ATP-dependent RNA helicase 564.5e-31100Show/hide
Query:  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
        MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
Subjt:  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE

A0A6J1KNP7 DEAD-box ATP-dependent RNA helicase 564.5e-31100Show/hide
Query:  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
        MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
Subjt:  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE

A0A7J8T8R2 Uncharacterized protein2.6e-3191.36Show/hide
Query:  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKFLIFILN
        MGETRDN+ YEEELLDYEEEEEKAPDSV AKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKFL   L+
Subjt:  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKFLIFILN

A0A7J9MAS8 Uncharacterized protein2.6e-3191.36Show/hide
Query:  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKFLIFILN
        MGETRDN+ YEEELLDYEEEEEKAPDSV AKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKFL   L+
Subjt:  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKFLIFILN

SwissProt top hitse value%identityAlignment
O13792 ATP-dependent RNA helicase uap563.3e-1563.89Show/hide
Query:  EEELLDYEEEEEKAPDSVGAKV--------NGE-AGKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
        +E+L+DYEEEEE   D    ++        NGE + KKG YVGIHS+GFRDFLLKPELLRAI DSGFEHPSE
Subjt:  EEELLDYEEEEEKAPDSVGAKV--------NGE-AGKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE

Q0JM17 DEAD-box ATP-dependent RNA helicase 569.4e-1869.44Show/hide
Query:  ETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAG--KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
        E +DNE YEE+L+DYEEE E   D      N  A   KKGYVGIHSSGFRDFLLKPELLRAI D GFEHPSE
Subjt:  ETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAG--KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE

Q56XG6 DEAD-box ATP-dependent RNA helicase 156.5e-2788.89Show/hide
Query:  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
        MG+ RDNE YEEELLDYEEE+EK PDS G KVNGEA KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
Subjt:  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE

Q5JK84 DEAD-box ATP-dependent RNA helicase 151.9e-1870.83Show/hide
Query:  ETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAG--KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
        E +DNE YEE+L+DYEEE E   D   A  N  A   KKGYVGIHSSGFRDFLLKPELLRAI D GFEHPSE
Subjt:  ETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAG--KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE

Q9LFN6 DEAD-box ATP-dependent RNA helicase 566.5e-2788.89Show/hide
Query:  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
        MG+ RDNE YEEELLDYEEE+EK PDS G KVNGEA KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
Subjt:  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE

Arabidopsis top hitse value%identityAlignment
AT5G11170.1 DEAD/DEAH box RNA helicase family protein4.6e-2888.89Show/hide
Query:  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
        MG+ RDNE YEEELLDYEEE+EK PDS G KVNGEA KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
Subjt:  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE

AT5G11200.1 DEAD/DEAH box RNA helicase family protein4.6e-2888.89Show/hide
Query:  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
        MG+ RDNE YEEELLDYEEE+EK PDS G KVNGEA KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
Subjt:  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE

AT5G11200.2 DEAD/DEAH box RNA helicase family protein4.6e-2888.89Show/hide
Query:  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
        MG+ RDNE YEEELLDYEEE+EK PDS G KVNGEA KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
Subjt:  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE

AT5G11200.3 DEAD/DEAH box RNA helicase family protein4.6e-2888.89Show/hide
Query:  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
        MG+ RDNE YEEELLDYEEE+EK PDS G KVNGEA KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE
Subjt:  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAAACAAGGGACAACGAATACGAGGAAGAGCTCCTCGACTACGAGGAAGAGGAAGAGAAGGCCCCCGATTCCGTTGGAGCCAAAGTCAACGGTGAAGCCGGAAA
GAAGGGTTATGTTGGGATTCATAGTTCGGGATTCAGAGACTTCCTATTGAAGCCAGAGCTTCTCCGTGCTATTGTAGACTCTGGATTTGAGCATCCATCTGAAGGCAAAT
TTCTAATTTTTATTCTCAATCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAAACAAGGGACAACGAATACGAGGAAGAGCTCCTCGACTACGAGGAAGAGGAAGAGAAGGCCCCCGATTCCGTTGGAGCCAAAGTCAACGGTGAAGCCGGAAA
GAAGGGTTATGTTGGGATTCATAGTTCGGGATTCAGAGACTTCCTATTGAAGCCAGAGCTTCTCCGTGCTATTGTAGACTCTGGATTTGAGCATCCATCTGAAGGCAAAT
TTCTAATTTTTATTCTCAATCGTTGA
Protein sequenceShow/hide protein sequence
MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKFLIFILNR