CuGenDBv2

Gene ID	HG10004695
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerase subunit
Genome location	Chr08:19561942..19563773
RNA-Seq Expression	HG10004695
Synteny	HG10004695
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0006412 - translation (biological process) GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0005886 - plasma membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0008270 - zinc ion binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function) GO:0097367 - carbohydrate derivative binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003677 - DNA binding (molecular function) GO:0000166 - nucleotide binding (molecular function)
InterPro domains	IPR042102 - RNA polymerase Rpb1, domain 3 superfamily IPR006592 - RNA polymerase, N-terminal IPR000722 - RNA polymerase, alpha subunit

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAB4269460.1 unnamed protein product [Prunus armeniaca]

2.0e-132

91.14

Show/hide

Query:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL
        SGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQHFASNIGVAKSKIREKEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICL
Subjt:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL

Query:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID
        HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS  IGDPISVPTQDMLIGLYVLT+GNRRGICAN    TI  EFL ESRSRKGSF IID
Subjt:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID

Query:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
        SN L NPTQRN EVLMAE  +LVFHNKVIDGTAIKRLI RLIDHFGMAYTSHILDQ+KTLGF+QATATSIS
Subjt:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS

CAB4274708.1 unnamed protein product [Prunus armeniaca]

2.0e-132

91.14

Show/hide

Query:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL
        SGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQHFASNIGVAKSKIREKEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICL
Subjt:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL

Query:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID
        HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS  IGDPISVPTQDMLIGLYVLT+GNRRGICAN    TI  EFL ESRSRKGSF IID
Subjt:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID

Query:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
        SN L NPTQRN EVLMAE  +LVFHNKVIDGTAIKRLI RLIDHFGMAYTSHILDQ+KTLGF+QATATSIS
Subjt:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS

CAB4299884.1 unnamed protein product [Prunus armeniaca]

2.0e-132

91.14

Show/hide

Query:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL
        SGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQHFASNIGVAKSKIREKEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICL
Subjt:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL

Query:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID
        HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS  IGDPISVPTQDMLIGLYVLT+GNRRGICAN    TI  EFL ESRSRKGSF IID
Subjt:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID

Query:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
        SN L NPTQRN EVLMAE  +LVFHNKVIDGTAIKRLI RLIDHFGMAYTSHILDQ+KTLGF+QATATSIS
Subjt:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS

CAB4305937.1 unnamed protein product [Prunus armeniaca]

2.0e-132

91.14

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Query:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL
        SGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQHFASNIGVAKSKIREKEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICL
Subjt:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL

Query:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID
        HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS  IGDPISVPTQDMLIGLYVLT+GNRRGICAN    TI  EFL ESRSRKGSF IID
Subjt:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID

Query:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
        SN L NPTQRN EVLMAE  +LVFHNKVIDGTAIKRLI RLIDHFGMAYTSHILDQ+KTLGF+QATATSIS
Subjt:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS

CAB4320153.1 unnamed protein product [Prunus armeniaca]

2.0e-132

91.14

Show/hide

Query:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL
        SGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQHFASNIGVAKSKIREKEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICL
Subjt:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL

Query:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID
        HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS  IGDPISVPTQDMLIGLYVLT+GNRRGICAN    TI  EFL ESRSRKGSF IID
Subjt:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID

Query:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
        SN L NPTQRN EVLMAE  +LVFHNKVIDGTAIKRLI RLIDHFGMAYTSHILDQ+KTLGF+QATATSIS
Subjt:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS

TrEMBL top hits

e value

%identity

Alignment

A0A6J5TZC9 DNA-directed RNA polymerase subunit

9.7e-133

91.14

Show/hide

Query:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL
        SGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQHFASNIGVAKSKIREKEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICL
Subjt:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL

Query:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID
        HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS  IGDPISVPTQDMLIGLYVLT+GNRRGICAN    TI  EFL ESRSRKGSF IID
Subjt:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID

Query:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
        SN L NPTQRN EVLMAE  +LVFHNKVIDGTAIKRLI RLIDHFGMAYTSHILDQ+KTLGF+QATATSIS
Subjt:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS

A0A6J5UKR1 DNA-directed RNA polymerase subunit

9.7e-133

91.14

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Query:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL
        SGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQHFASNIGVAKSKIREKEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICL
Subjt:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL

Query:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID
        HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS  IGDPISVPTQDMLIGLYVLT+GNRRGICAN    TI  EFL ESRSRKGSF IID
Subjt:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID

Query:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
        SN L NPTQRN EVLMAE  +LVFHNKVIDGTAIKRLI RLIDHFGMAYTSHILDQ+KTLGF+QATATSIS
Subjt:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS

A0A6J5WKL9 DNA-directed RNA polymerase

9.7e-133

91.14

Show/hide

Query:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL
        SGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQHFASNIGVAKSKIREKEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICL
Subjt:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL

Query:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID
        HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS  IGDPISVPTQDMLIGLYVLT+GNRRGICAN    TI  EFL ESRSRKGSF IID
Subjt:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID

Query:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
        SN L NPTQRN EVLMAE  +LVFHNKVIDGTAIKRLI RLIDHFGMAYTSHILDQ+KTLGF+QATATSIS
Subjt:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS

A0A6J5X0Y3 DNA-directed RNA polymerase

9.7e-133

91.14

Show/hide

Query:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL
        SGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQHFASNIGVAKSKIREKEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICL
Subjt:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL

Query:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID
        HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS  IGDPISVPTQDMLIGLYVLT+GNRRGICAN    TI  EFL ESRSRKGSF IID
Subjt:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID

Query:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
        SN L NPTQRN EVLMAE  +LVFHNKVIDGTAIKRLI RLIDHFGMAYTSHILDQ+KTLGF+QATATSIS
Subjt:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS

A0A6J5Y6V4 DNA-directed RNA polymerase subunit

9.7e-133

91.14

Show/hide

Query:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL
        SGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQHFASNIGVAKSKIREKEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICL
Subjt:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL

Query:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID
        HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS  IGDPISVPTQDMLIGLYVLT+GNRRGICAN    TI  EFL ESRSRKGSF IID
Subjt:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICAN---RTIGPEFLRESRSRKGSFLIID

Query:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
        SN L NPTQRN EVLMAE  +LVFHNKVIDGTAIKRLI RLIDHFGMAYTSHILDQ+KTLGF+QATATSIS
Subjt:  SNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS

SwissProt top hits

e value

%identity

Alignment

A6MM27 DNA-directed RNA polymerase subunit beta'

2.9e-94

97.16

Show/hide

Query:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL
        SGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL
Subjt:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL

Query:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICANR
        HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS  IGDPISVPTQDMLIGLYVLT+GNRRGICANR
Subjt:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICANR

P11705 DNA-directed RNA polymerase subunit beta'

3.2e-93

95.45

Show/hide

Query:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL
        SGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAK KIREKEPIVW+ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL
Subjt:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL

Query:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICANR
        HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS  IGDPISVPTQDMLIGLY+LT+GNRRGICANR
Subjt:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICANR

Q09X26 DNA-directed RNA polymerase subunit beta'

2.5e-93

95.45

Show/hide

Query:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL
        SGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQHFASNIGVAKSKIREKEP+VWEILQ+VMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICL
Subjt:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL

Query:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICANR
        HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH NLLS  IGDPISVPTQDMLIGLYVLT+GNRRGICANR
Subjt:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICANR

Q4VZP2 DNA-directed RNA polymerase subunit beta'

5.3e-96

98.86

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Query:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL
        SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL
Subjt:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL

Query:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICANR
        HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS IGDPISVPTQDMLIGLYVLT+GNRRGICANR
Subjt:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICANR

Q8S8Y0 DNA-directed RNA polymerase subunit beta'

2.5e-93

95.45

Show/hide

Query:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL
        SGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICL
Subjt:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL

Query:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICANR
        HPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLS  IGDPISVPTQDMLIGLYVLT+GNRRGIC NR
Subjt:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICANR

Arabidopsis top hits

e value

%identity

Alignment

AT2G40030.1 nuclear RNA polymerase D1B

9.9e-13

25.81

Show/hide

Query:  QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYV
        + VM G  V +NR PT H+  +QA +  + E   + ++PL+C   +ADFDGD + +  P SL A+AE   L      LLSS  G  I     D L+ L V
Subjt:  QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYV

Query:  L--------TNGNRRGICANRTIGPEFLRESRSRKGSFLIIDSNLLLNPTQRNM--EVLMAEWVDLVFHNKVID--GTAIKRLISRLIDHFGMAYTSHIL
        +            +  +  + ++ P  LR+S     ++ +     L  P + +   +  + +  DL+  +  +D  G+ I  +++ +    G   T    
Subjt:  L--------TNGNRRGICANRTIGPEFLRESRSRKGSFLIIDSNLLLNPTQRNM--EVLMAEWVDLVFHNKVID--GTAIKRLISRLIDHFGMAYTSHIL

Query:  DQLKTLGFQQATATSIS
        D L+ L  +   A   S
Subjt:  DQLKTLGFQQATATSIS

AT5G60040.1 nuclear RNA polymerase C1

6.2e-15

33.88

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Query:  IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS
        +G  + +I ++  I   + + + +G  VL NR P+LHR+ I   +  ++  R +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM    NL + 
Subjt:  IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS

Query:  TIGDPISVPTQDMLIGLYVLT
          G+ +   TQD L   +++T
Subjt:  TIGDPISVPTQDMLIGLYVLT

AT5G60040.2 nuclear RNA polymerase C1

6.2e-15

33.88

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Query:  IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS
        +G  + +I ++  I   + + + +G  VL NR P+LHR+ I   +  ++  R +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM    NL + 
Subjt:  IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS

Query:  TIGDPISVPTQDMLIGLYVLT
          G+ +   TQD L   +++T
Subjt:  TIGDPISVPTQDMLIGLYVLT

ATCG00170.1 DNA-directed RNA polymerase family protein

1.8e-22

92.86

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Query:  MAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
        MAE  +LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSIS
Subjt:  MAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS

ATCG00180.1 DNA-directed RNA polymerase family protein

4.3e-93

94.32

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Query:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL
        SGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKS+IREK+PIVWEILQEVMQGHPVLLNRAPTLHRLGIQ+FQPILVEGR ICL
Subjt:  SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL

Query:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICANR
        HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS  IGDPISVPTQDMLIGLYVLT+G RRGICANR
Subjt:  HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICANR

Sequences

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CDS sequence

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ATGGGTGAAAACATCAAAGAGAAGAAGAATGTACGATTGATGGAAGAAAATTATAGATGGGGAGTTGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTC
AGGACGTTCTGTTATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGGCTAATTC
GACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTAGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTA
AATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTCGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGA
CTTTGATGGAGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCACATATGAATCTCTTGTCTTCAACTATTGGGG
ATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAACGAACGGGAATCGACGAGGTATTTGTGCAAATCGGACCATAGGTCCTGAATTTCTACGC
GAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTGACTCAAACCTATTGTTGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGAATGGGTCGATCTGGTCTT
TCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGG
GGTTCCAACAGGCCACTGCTACATCCATTTCAGACAAACCCGTTACACTAAGACCCATGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAG

mRNA sequence

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Protein sequence

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MGENIKEKKNVRLMEENYRWGVAKREDFGRLCLANGSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLL
NRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSTIGDPISVPTQDMLIGLYVLTNGNRRGICANRTIGPEFLR
ESRSRKGSFLIIDSNLLLNPTQRNMEVLMAEWVDLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISDKPVTLRPMKHVWVQGKDPPNIG

HG10004695 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome