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HG10004806 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10004806
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionpentatricopeptide repeat-containing protein At1g25360-like
Genome locationChr08:20588633..20588878
RNA-Seq ExpressionHG10004806
SyntenyHG10004806
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585558.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]3.1e-1864.63Show/hide
Query:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
        MA E FNGTP N+RDTI  N +ITG+      HSA+ +FHAMRR NFRPD F +TSVLSALA IV  DNEQ CGQMH +V K
Subjt:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
KAG7020472.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-1864.63Show/hide
Query:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
        MA E FNGTP N+RDTI  N +ITG+      HSA+ +FHAMRR NFRPD F +TSVLSALA IV  DNEQ CGQMH +V K
Subjt:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
XP_022951057.1 pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita moschata]3.1e-1864.63Show/hide
Query:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
        MA E FNGTP N+RDTI  N +ITG+      HSA+ +FHAMRR NFRPD F +TSVLSALA IV  DNEQ CGQMH +V K
Subjt:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
XP_023002238.1 pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita maxima]2.6e-1763.41Show/hide
Query:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
        MA E FN TP N+RDTI  N +ITG+      HSA+ +FHAMRR NFRPD F +TSVLSALA IV  DNEQ CGQMH +V K
Subjt:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
XP_023537093.1 pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita pepo subsp. pepo]3.1e-1864.63Show/hide
Query:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
        MA E FNGTP N+RDTI  N +ITG+      HSA+ +FHAMRR NFRPD F +TSVLSALA IV  DNEQ CGQMH +V K
Subjt:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
TrEMBL top hitse value%identityAlignment
A0A5A7VDP5 Pentatricopeptide repeat-containing protein9.1e-1659.49Show/hide
Query:  ETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
        E FNGTP  +RD++  N +ITGY      HSALE+F AMRR +FRPD F +TSVLSAL  +V  DNEQ CGQMH +V K
Subjt:  ETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
A0A6J1CRF6 pentatricopeptide repeat-containing protein At1g25360-like4.8e-1762.2Show/hide
Query:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
        +A   FNGTP  +RDTI  N +ITGY      HSALE+FHAMRRGNF+PD F +TSVLSALA IV  DNEQ C Q+H +V K
Subjt:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
A0A6J1CT83 pentatricopeptide repeat-containing protein At1g25360-like2.4e-1658.54Show/hide
Query:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
        +A E FNGTP N+RDT+  N +ITGY      H+ALE+FHAMR  ++RPD F +TSVLSALA IV  DN + CGQMH +V K
Subjt:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
A0A6J1GGL5 pentatricopeptide repeat-containing protein At1g25360-like1.5e-1864.63Show/hide
Query:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
        MA E FNGTP N+RDTI  N +ITG+      HSA+ +FHAMRR NFRPD F +TSVLSALA IV  DNEQ CGQMH +V K
Subjt:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
A0A6J1KSZ4 pentatricopeptide repeat-containing protein At1g25360-like1.3e-1763.41Show/hide
Query:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
        MA E FN TP N+RDTI  N +ITG+      HSA+ +FHAMRR NFRPD F +TSVLSALA IV  DNEQ CGQMH +V K
Subjt:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
SwissProt top hitse value%identityAlignment
Q9FRI5 Pentatricopeptide repeat-containing protein At1g253601.5e-0735.37Show/hide
Query:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
        +A   F   P  +RDT++ N +ITG+      +SA+ +F  M+   F+PD F + SVL+ LA +   D+E+ C Q H +  K
Subjt:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
Arabidopsis top hitse value%identityAlignment
AT1G25360.1 Pentatricopeptide repeat (PPR) superfamily protein1.1e-0835.37Show/hide
Query:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK
        +A   F   P  +RDT++ N +ITG+      +SA+ +F  M+   F+PD F + SVL+ LA +   D+E+ C Q H +  K
Subjt:  MAGETFNGTPCNIRDTILSNTVITGYVR----HSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGAGAAACATTCAATGGAACTCCATGCAATATAAGGGACACTATTCTCTCCAACACAGTGATTACTGGGTATGTTCGTCATTCTGCTCTCGAAATGTTTCATGC
TATGAGACGGGGCAATTTTCGGCCTGATATCTTCAAATATACAAGTGTGCTCAGTGCTTTAGCGTTTATTGTTGATATTGATAATGAGCAGCTGTGTGGCCAAATGCATA
TGTCAGTTTCAAAAGGAGAACACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGGAGAAACATTCAATGGAACTCCATGCAATATAAGGGACACTATTCTCTCCAACACAGTGATTACTGGGTATGTTCGTCATTCTGCTCTCGAAATGTTTCATGC
TATGAGACGGGGCAATTTTCGGCCTGATATCTTCAAATATACAAGTGTGCTCAGTGCTTTAGCGTTTATTGTTGATATTGATAATGAGCAGCTGTGTGGCCAAATGCATA
TGTCAGTTTCAAAAGGAGAACACTAG
Protein sequenceShow/hide protein sequence
MAGETFNGTPCNIRDTILSNTVITGYVRHSALEMFHAMRRGNFRPDIFKYTSVLSALAFIVDIDNEQLCGQMHMSVSKGEH