; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10004807 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10004807
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr08:20589201..20589431
RNA-Seq ExpressionHG10004807
SyntenyHG10004807
Gene Ontology termsGO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585558.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]4.6e-1678.57Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA
        M  RDELTWTTLIT Y + DDLN AR L+DTMTEKL VAWNAMISGYVH G+FEDA
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA

KAG7020472.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]4.6e-1678.57Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA
        M  RDELTWTTLIT Y + DDLN AR L+DTMTEKL VAWNAMISGYVH G+FEDA
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA

XP_022951057.1 pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita moschata]4.6e-1678.57Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA
        M  RDELTWTTLIT Y + DDLN AR L+DTMTEKL VAWNAMISGYVH G+FEDA
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA

XP_023002238.1 pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita maxima]4.6e-1678.57Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA
        M  RDELTWTTLIT Y + DDLN AR L+DTMTEKL VAWNAMISGYVH G+FEDA
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA

XP_023537093.1 pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita pepo subsp. pepo]4.6e-1678.57Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA
        M  RDELTWTTLIT Y + DDLN AR L+DTMTEKL VAWNAMISGYVH G+FEDA
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA

TrEMBL top hitse value%identityAlignment
A0A2I4ENP7 pentatricopeptide repeat-containing protein At1g253604.7e-1469.64Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA
        M  RDELTWTT+IT Y + DDL  ARG++D MTEKL VAWNAMISGYVHRG  ++A
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA

A0A6J1CRF6 pentatricopeptide repeat-containing protein At1g25360-like2.5e-1571.43Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA
        M  RDELTWTT+IT Y + DDLN A GL+DTMTEKL VAWN+MISGYVH G+F++A
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA

A0A6J1GGL5 pentatricopeptide repeat-containing protein At1g25360-like2.3e-1678.57Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA
        M  RDELTWTTLIT Y + DDLN AR L+DTMTEKL VAWNAMISGYVH G+FEDA
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA

A0A6J1KSZ4 pentatricopeptide repeat-containing protein At1g25360-like2.3e-1678.57Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA
        M  RDELTWTTLIT Y + DDLN AR L+DTMTEKL VAWNAMISGYVH G+FEDA
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA

A0A7J7DLB9 Pentatricopeptide repeat-containing protein2.3e-1366.07Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA
        M  RDEL+WTT+IT Y + DDL+ AR L+D MTEKL VAWNAMISGY+H G+++DA
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA

SwissProt top hitse value%identityAlignment
Q56XI1 Pentatricopeptide repeat-containing protein At1g09410, mitochondrial6.8e-1046.43Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA
        M+ R  +TWTT++T YGQ + +++AR + D M EK  V+W +M+ GYV  G  EDA
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA

Q9FXB9 Pentatricopeptide repeat-containing protein At1g56690, mitochondrial4.1e-0744.64Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA
        M  R+ +TWTT+IT Y Q + ++ AR L + M EK  V+W +M+ GY   G  EDA
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA

Q9M4P3 Pentatricopeptide repeat-containing protein At4g16835, mitochondrial2.8e-0844.83Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDASN
        M  +D  +W T+IT Y ++ ++ +AR L  +M EK  V+WNAMISGY+  G  E AS+
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDASN

Q9M9R6 Pentatricopeptide repeat-containing protein At1g144704.8e-0846.43Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA
        M   D ++WT +IT + +  DL  AR   D M EK  V+WNAM+SGY   G  EDA
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA

Q9SY02 Pentatricopeptide repeat-containing protein At4g027507.0e-0735.29Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDASNTLYGNAFDWS
        M  RD  +W T+++ Y Q   +++AR + D M EK  V+WNA++S YV     E+A   L+ +  +W+
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDASNTLYGNAFDWS

Arabidopsis top hitse value%identityAlignment
AT1G09410.1 pentatricopeptide (PPR) repeat-containing protein4.8e-1146.43Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA
        M+ R  +TWTT++T YGQ + +++AR + D M EK  V+W +M+ GYV  G  EDA
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA

AT1G14470.1 Pentatricopeptide repeat (PPR) superfamily protein3.4e-0946.43Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA
        M   D ++WT +IT + +  DL  AR   D M EK  V+WNAM+SGY   G  EDA
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA

AT1G56690.1 Pentatricopeptide repeat (PPR) superfamily protein2.9e-0844.64Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA
        M  R+ +TWTT+IT Y Q + ++ AR L + M EK  V+W +M+ GY   G  EDA
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDA

AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.0e-0835.29Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDASNTLYGNAFDWS
        M  RD  +W T+++ Y Q   +++AR + D M EK  V+WNA++S YV     E+A   L+ +  +W+
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDASNTLYGNAFDWS

AT4G16835.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.0e-0944.83Show/hide
Query:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDASN
        M  +D  +W T+IT Y ++ ++ +AR L  +M EK  V+WNAMISGY+  G  E AS+
Subjt:  MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDASN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGGAAGGGATGAATTAACGTGGACGACGTTGATTACTTGGTATGGGCAGAAGGATGATCTGAATGAGGCACGTGGCCTTGTAGACACAATGACTGAAAAGCTGAG
TGTAGCATGGAATGCCATGATCTCTGGATATGTGCACCGTGGTATTTTCGAGGATGCCTCGAACACTCTTTATGGAAATGCGTTTGATTGGAGTCCACCACTACGAGTTC
ACCTACACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGGAAGGGATGAATTAACGTGGACGACGTTGATTACTTGGTATGGGCAGAAGGATGATCTGAATGAGGCACGTGGCCTTGTAGACACAATGACTGAAAAGCTGAG
TGTAGCATGGAATGCCATGATCTCTGGATATGTGCACCGTGGTATTTTCGAGGATGCCTCGAACACTCTTTATGGAAATGCGTTTGATTGGAGTCCACCACTACGAGTTC
ACCTACACTAG
Protein sequenceShow/hide protein sequence
MAGRDELTWTTLITWYGQKDDLNEARGLVDTMTEKLSVAWNAMISGYVHRGIFEDASNTLYGNAFDWSPPLRVHLH