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HG10004808 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10004808
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr08:20590234..20590647
RNA-Seq ExpressionHG10004808
SyntenyHG10004808
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020472.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-1161.43Show/hide
Query:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSK
        MKK GY+PDTKY  H MESEHKEYAL+THS+ LAVGFGLMKL  G  +R+   ++    +   AFKFMSK
Subjt:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSK

PON80768.1 DYW domain containing protein [Parasponia andersonii]9.8e-1247.71Show/hide
Query:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSKSGEKWERDFTISRMVNGCDGNSDFYILFYG
        MKKLGYIPDTKY   +MESE KEYALSTHS++LAVGFGLMKL  G  IR+   ++    +   AFKF+S+ G++      I  M  G +  +D  + FY 
Subjt:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSKSGEKWERDFTISRMVNGCDGNSDFYILFYG

Query:  SK----NWP
         +     WP
Subjt:  SK----NWP

XP_010271478.1 PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Nelumbo nucifera]2.8e-1158.11Show/hide
Query:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSKSGEK
        M+KLGYIPDTKY  H +ESEHKEYALSTHS++LAV FGL+KL  G  +R+   ++    +   AFKFMSK  E+
Subjt:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSKSGEK

XP_022144208.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia]2.0e-1265.71Show/hide
Query:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSK
        MKKLGYIPDTKY  H MESEHKEYALSTHS++LAVGFGLMKL  G  +R+   ++    +   AFKFMSK
Subjt:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSK

XP_038886633.1 pentatricopeptide repeat-containing protein At1g25360-like [Benincasa hispida]3.4e-1264.29Show/hide
Query:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSK
        MKKLGYIPDTKY  H MESEHKEYALSTHS++LAVGFGLMKL  G  +R+   ++    +   AFKFMS+
Subjt:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSK

TrEMBL top hitse value%identityAlignment
A0A1U8AXN7 pentatricopeptide repeat-containing protein At1g253601.4e-1158.11Show/hide
Query:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSKSGEK
        M+KLGYIPDTKY  H +ESEHKEYALSTHS++LAV FGL+KL  G  +R+   ++    +   AFKFMSK  E+
Subjt:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSKSGEK

A0A2P5E5D9 DYW domain containing protein4.7e-1247.71Show/hide
Query:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSKSGEKWERDFTISRMVNGCDGNSDFYILFYG
        MKKLGYIPDTKY   +MESE KEYALSTHS++LAVGFGLMKL  G  IR+   ++    +   AFKF+S+ G++      I  M  G +  +D  + FY 
Subjt:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSKSGEKWERDFTISRMVNGCDGNSDFYILFYG

Query:  SK----NWP
         +     WP
Subjt:  SK----NWP

A0A5A7VDN1 Pentatricopeptide repeat-containing protein1.8e-1162.86Show/hide
Query:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSK
        MKKLGYIPDTKY  H MESEHKEYALSTHS++LAV FGLMKL  G  +R+   ++    +   A KFMSK
Subjt:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSK

A0A6J1CRF6 pentatricopeptide repeat-containing protein At1g25360-like9.5e-1365.71Show/hide
Query:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSK
        MKKLGYIPDTKY  H MESEHKEYALSTHS++LAVGFGLMKL  G  +R+   ++    +   AFKFMSK
Subjt:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSK

A0A6J1GGL5 pentatricopeptide repeat-containing protein At1g25360-like1.8e-1161.43Show/hide
Query:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSK
        MKK GY+PDTKY  H MESEHKEYAL+THS+ LAVGFGLMKL  G  +R+   ++    +   AFKFMSK
Subjt:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKL-WGKIIRLTTLHMTSSNNFSVAFKFMSK

SwissProt top hitse value%identityAlignment
P93011 Pentatricopeptide repeat-containing protein At2g337602.7e-0437.31Show/hide
Query:  KKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKLWGKIIRLTTLHMTSSNNFSVAFKFMS
        K++GY P ++   H +E E KE+AL  HS++LAV FGL+K     I +   ++    +   AFK++S
Subjt:  KKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKLWGKIIRLTTLHMTSSNNFSVAFKFMS

Q7Y211 Pentatricopeptide repeat-containing protein At3g57430, chloroplastic1.1e-0540Show/hide
Query:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKLW-GKIIRLTTLHMTSSNNFSVAFKFMSK
        M+K GY+PDT    H++E + KE  L  HS++LA+ FG++    G IIR+   ++   N+  +A KF+SK
Subjt:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKLW-GKIIRLTTLHMTSSNNFSVAFKFMSK

Q9FRI5 Pentatricopeptide repeat-containing protein At1g253605.8e-0758.14Show/hide
Query:  MKKLGYIPDTKYGPHHMESE-HKEYALSTHSDELAVGFGLMKL
        M++LGY+PDT +  H +ES+ HKE  L+THS+++AV FGLMKL
Subjt:  MKKLGYIPDTKYGPHHMESE-HKEYALSTHSDELAVGFGLMKL

Q9SHZ8 Pentatricopeptide repeat-containing protein At2g220704.9e-0639.13Show/hide
Query:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKLWGKIIRLTTLHMTSSNNFSVAFKFMSK
        +KK+GY+PDT    H +E E KE  L  HS++LA+ FGL+    K       ++   N+   A KF+SK
Subjt:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKLWGKIIRLTTLHMTSSNNFSVAFKFMSK

Q9ZVF4 Pentatricopeptide repeat-containing protein At2g01510, mitochondrial7.1e-0551.22Show/hide
Query:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMK
        ++K+GY+PDT    H +E E KE +LS HS++LA+ FGL+K
Subjt:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMK

Arabidopsis top hitse value%identityAlignment
AT1G25360.1 Pentatricopeptide repeat (PPR) superfamily protein4.1e-0858.14Show/hide
Query:  MKKLGYIPDTKYGPHHMESE-HKEYALSTHSDELAVGFGLMKL
        M++LGY+PDT +  H +ES+ HKE  L+THS+++AV FGLMKL
Subjt:  MKKLGYIPDTKYGPHHMESE-HKEYALSTHSDELAVGFGLMKL

AT2G01510.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.0e-0651.22Show/hide
Query:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMK
        ++K+GY+PDT    H +E E KE +LS HS++LA+ FGL+K
Subjt:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMK

AT2G22070.1 pentatricopeptide (PPR) repeat-containing protein3.5e-0739.13Show/hide
Query:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKLWGKIIRLTTLHMTSSNNFSVAFKFMSK
        +KK+GY+PDT    H +E E KE  L  HS++LA+ FGL+    K       ++   N+   A KF+SK
Subjt:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKLWGKIIRLTTLHMTSSNNFSVAFKFMSK

AT2G33760.1 Pentatricopeptide repeat (PPR) superfamily protein1.9e-0537.31Show/hide
Query:  KKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKLWGKIIRLTTLHMTSSNNFSVAFKFMS
        K++GY P ++   H +E E KE+AL  HS++LAV FGL+K     I +   ++    +   AFK++S
Subjt:  KKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKLWGKIIRLTTLHMTSSNNFSVAFKFMS

AT3G57430.1 Tetratricopeptide repeat (TPR)-like superfamily protein7.7e-0740Show/hide
Query:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKLW-GKIIRLTTLHMTSSNNFSVAFKFMSK
        M+K GY+PDT    H++E + KE  L  HS++LA+ FG++    G IIR+   ++   N+  +A KF+SK
Subjt:  MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKLW-GKIIRLTTLHMTSSNNFSVAFKFMSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAATTAGGATATATTCCAGACACAAAGTATGGGCCTCATCATATGGAATCTGAACACAAAGAATATGCCTTGTCTACTCACAGTGATGAGCTTGCAGTTGGGTT
TGGGCTAATGAAGCTCTGGGGAAAAATTATTCGGCTGACAACTCTGCATATGACATCATCGAATAATTTCTCAGTAGCTTTCAAGTTCATGTCTAAAAGTGGTGAGAAAT
GGGAAAGAGATTTCACCATTTCAAGAATGGTGAATGGTTGTGATGGTAATTCTGATTTCTACATTCTGTTCTATGGGTCTAAAAACTGGCCATACATCACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAATTAGGATATATTCCAGACACAAAGTATGGGCCTCATCATATGGAATCTGAACACAAAGAATATGCCTTGTCTACTCACAGTGATGAGCTTGCAGTTGGGTT
TGGGCTAATGAAGCTCTGGGGAAAAATTATTCGGCTGACAACTCTGCATATGACATCATCGAATAATTTCTCAGTAGCTTTCAAGTTCATGTCTAAAAGTGGTGAGAAAT
GGGAAAGAGATTTCACCATTTCAAGAATGGTGAATGGTTGTGATGGTAATTCTGATTTCTACATTCTGTTCTATGGGTCTAAAAACTGGCCATACATCACCTAG
Protein sequenceShow/hide protein sequence
MKKLGYIPDTKYGPHHMESEHKEYALSTHSDELAVGFGLMKLWGKIIRLTTLHMTSSNNFSVAFKFMSKSGEKWERDFTISRMVNGCDGNSDFYILFYGSKNWPYIT