; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10004809 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10004809
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionB3 domain-containing protein
Genome locationChr08:20593206..20593787
RNA-Seq ExpressionHG10004809
SyntenyHG10004809
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR005508 - B3 domain-containing protein At2g31720-like
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065188.1 putative B3 domain-containing protein [Cucumis melo var. makuwa]2.4e-5666.15Show/hide
Query:  GIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAMANGGFCKRKRKKPSTVKQRKKS--------------REKEMELGKSPPEMPAAMRDRIMGKG
        G+HIPRRK+S  V+SK E  D+GASISM+E A I++AMANGGFC+RKRKK  TVKQ KKS              R+K MEL +S PEMPA+MRDRI+G G
Subjt:  GIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAMANGGFCKRKRKKPSTVKQRKKS--------------REKEMELGKSPPEMPAAMRDRIMGKG

Query:  GYEIELVIQKQLEESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKKKKKKGMEVGIMDSLLQESSIWLKKWKIGSGKVYCLMNN
        GYEI+LVIQKQLEESDV+RNHGRL LPA KV+ EF+REEER +L+EEN    KKK KKG+EVG+M   L+ESS+ LKKWKIGSGK YCLM N
Subjt:  GYEIELVIQKQLEESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKKKKKKGMEVGIMDSLLQESSIWLKKWKIGSGKVYCLMNN

XP_008445569.1 PREDICTED: putative B3 domain-containing protein At3g49610 [Cucumis melo]2.4e-5666.15Show/hide
Query:  GIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAMANGGFCKRKRKKPSTVKQRKKS--------------REKEMELGKSPPEMPAAMRDRIMGKG
        G+HIPRRK+S  V+SK E  D+GASISM+E A I++AMANGGFC+RKRKK  TVKQ KKS              R+K MEL +S PEMPA+MRDRI+G G
Subjt:  GIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAMANGGFCKRKRKKPSTVKQRKKS--------------REKEMELGKSPPEMPAAMRDRIMGKG

Query:  GYEIELVIQKQLEESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKKKKKKGMEVGIMDSLLQESSIWLKKWKIGSGKVYCLMNN
        GYEI+LVIQKQLEESDV+RNHGRL LPA KV+ EF+REEER +L+EEN    KKK KKG+EVG+M   L+ESS+ LKKWKIGSGK YCLM N
Subjt:  GYEIELVIQKQLEESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKKKKKKGMEVGIMDSLLQESSIWLKKWKIGSGKVYCLMNN

XP_016899957.1 PREDICTED: B3 domain-containing protein At1g05920-like [Cucumis melo]1.5e-4258.24Show/hide
Query:  NGIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAMANGGFCKRKRKKPSTVKQRKKSREKEMELGKSPPEMPAAMRDRIMGKGGYEIELVIQKQLE
        NGI IP+RKRS    ++P+ +++  S S++EVA  MI MANG    R+RKKP         R +EME G+S  EMPAAMR+ I+  GGYEI+LVI+K+LE
Subjt:  NGIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAMANGGFCKRKRKKPSTVKQRKKSREKEMELGKSPPEMPAAMRDRIMGKGGYEIELVIQKQLE

Query:  ESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKK---KKKKGMEVGIMDSLLQESSIWLKKWKIGSGKVYCLMNN
        ESDV+RNHGRL LP  K++ EF RE+ER++LDEENG KKKK   KKK G+EVGIMD  L+ESS+ LKKWKIGS + YCL+ N
Subjt:  ESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKK---KKKKGMEVGIMDSLLQESSIWLKKWKIGSGKVYCLMNN

XP_031737294.1 putative B3 domain-containing protein At3g49610 [Cucumis sativus]1.9e-5864.59Show/hide
Query:  MGMGMIQP--GLPLGFNGIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAMANGGFCKRKRKKPSTVKQRKKS--------------REKEMELGK
        MG  MIQ    L L   G+H+PRRKRS  V+SK E  DDGASISM+E A I+IAMAN GFCKRK+K+  TVKQ KKS              ++K MEL +
Subjt:  MGMGMIQP--GLPLGFNGIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAMANGGFCKRKRKKPSTVKQRKKS--------------REKEMELGK

Query:  SPPEMPAAMRDRIMGKGGYEIELVIQKQLEESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKKKKKKGMEVGIMDSLLQESSIWLKKWKIGS
        S PEMPA+MRDR++GKGGYEI+LVIQKQLEESDV+RNHGRL LPAKKV+ EF+REEER +L+EEN    KKK KKG+EVG+MD  L+ESS+ LKKWKIGS
Subjt:  SPPEMPAAMRDRIMGKGGYEIELVIQKQLEESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKKKKKKGMEVGIMDSLLQESSIWLKKWKIGS

Query:  GKVYCLMNN
        GK YCLM N
Subjt:  GKVYCLMNN

XP_038884919.1 B3 domain-containing protein At1g05920-like [Benincasa hispida]1.2e-6873.11Show/hide
Query:  MGMIQPGLPLG-FNGIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAM--ANGGFCKRKRKKPSTVKQRK------------------KSREKEME
        MGMI+ GL LG  NG++IPRRKRS  V+SKP  DDDGASISMMEVA IMIAM  ANGG+ KRKRKK ST KQRK                  KSR KEME
Subjt:  MGMIQPGLPLG-FNGIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAM--ANGGFCKRKRKKPSTVKQRK------------------KSREKEME

Query:  LGKSPPEMPAAMRDRIMGKGGYEIELVIQKQLEESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKKKKKKGMEVGIMDSLLQESSIWLKKWK
        LGKSPPEMPAAMRDRI+G GG EIELVIQK+LEESDVNRN+GRLSLPAKKVRREF+REEE+K+LDEE G  K +KKKKGMEVGI+D  L+ESS+WLKKWK
Subjt:  LGKSPPEMPAAMRDRIMGKGGYEIELVIQKQLEESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKKKKKKGMEVGIMDSLLQESSIWLKKWK

Query:  IGSGKVYCLMNN
        IGSGK YCLMNN
Subjt:  IGSGKVYCLMNN

TrEMBL top hitse value%identityAlignment
A0A0A0LRL4 Uncharacterized protein9.3e-5964.59Show/hide
Query:  MGMGMIQP--GLPLGFNGIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAMANGGFCKRKRKKPSTVKQRKKS--------------REKEMELGK
        MG  MIQ    L L   G+H+PRRKRS  V+SK E  DDGASISM+E A I+IAMAN GFCKRK+K+  TVKQ KKS              ++K MEL +
Subjt:  MGMGMIQP--GLPLGFNGIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAMANGGFCKRKRKKPSTVKQRKKS--------------REKEMELGK

Query:  SPPEMPAAMRDRIMGKGGYEIELVIQKQLEESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKKKKKKGMEVGIMDSLLQESSIWLKKWKIGS
        S PEMPA+MRDR++GKGGYEI+LVIQKQLEESDV+RNHGRL LPAKKV+ EF+REEER +L+EEN    KKK KKG+EVG+MD  L+ESS+ LKKWKIGS
Subjt:  SPPEMPAAMRDRIMGKGGYEIELVIQKQLEESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKKKKKKGMEVGIMDSLLQESSIWLKKWKIGS

Query:  GKVYCLMNN
        GK YCLM N
Subjt:  GKVYCLMNN

A0A1S3BD17 putative B3 domain-containing protein At3g496101.1e-5666.15Show/hide
Query:  GIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAMANGGFCKRKRKKPSTVKQRKKS--------------REKEMELGKSPPEMPAAMRDRIMGKG
        G+HIPRRK+S  V+SK E  D+GASISM+E A I++AMANGGFC+RKRKK  TVKQ KKS              R+K MEL +S PEMPA+MRDRI+G G
Subjt:  GIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAMANGGFCKRKRKKPSTVKQRKKS--------------REKEMELGKSPPEMPAAMRDRIMGKG

Query:  GYEIELVIQKQLEESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKKKKKKGMEVGIMDSLLQESSIWLKKWKIGSGKVYCLMNN
        GYEI+LVIQKQLEESDV+RNHGRL LPA KV+ EF+REEER +L+EEN    KKK KKG+EVG+M   L+ESS+ LKKWKIGSGK YCLM N
Subjt:  GYEIELVIQKQLEESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKKKKKKGMEVGIMDSLLQESSIWLKKWKIGSGKVYCLMNN

A0A1S4DVE5 B3 domain-containing protein At1g05920-like7.2e-4358.24Show/hide
Query:  NGIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAMANGGFCKRKRKKPSTVKQRKKSREKEMELGKSPPEMPAAMRDRIMGKGGYEIELVIQKQLE
        NGI IP+RKRS    ++P+ +++  S S++EVA  MI MANG    R+RKKP         R +EME G+S  EMPAAMR+ I+  GGYEI+LVI+K+LE
Subjt:  NGIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAMANGGFCKRKRKKPSTVKQRKKSREKEMELGKSPPEMPAAMRDRIMGKGGYEIELVIQKQLE

Query:  ESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKK---KKKKGMEVGIMDSLLQESSIWLKKWKIGSGKVYCLMNN
        ESDV+RNHGRL LP  K++ EF RE+ER++LDEENG KKKK   KKK G+EVGIMD  L+ESS+ LKKWKIGS + YCL+ N
Subjt:  ESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKK---KKKKGMEVGIMDSLLQESSIWLKKWKIGSGKVYCLMNN

A0A5A7VC33 Putative B3 domain-containing protein1.1e-5666.15Show/hide
Query:  GIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAMANGGFCKRKRKKPSTVKQRKKS--------------REKEMELGKSPPEMPAAMRDRIMGKG
        G+HIPRRK+S  V+SK E  D+GASISM+E A I++AMANGGFC+RKRKK  TVKQ KKS              R+K MEL +S PEMPA+MRDRI+G G
Subjt:  GIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAMANGGFCKRKRKKPSTVKQRKKS--------------REKEMELGKSPPEMPAAMRDRIMGKG

Query:  GYEIELVIQKQLEESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKKKKKKGMEVGIMDSLLQESSIWLKKWKIGSGKVYCLMNN
        GYEI+LVIQKQLEESDV+RNHGRL LPA KV+ EF+REEER +L+EEN    KKK KKG+EVG+M   L+ESS+ LKKWKIGSGK YCLM N
Subjt:  GYEIELVIQKQLEESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKKKKKKGMEVGIMDSLLQESSIWLKKWKIGSGKVYCLMNN

A0A5A7VFT2 B3 domain-containing protein7.2e-4358.24Show/hide
Query:  NGIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAMANGGFCKRKRKKPSTVKQRKKSREKEMELGKSPPEMPAAMRDRIMGKGGYEIELVIQKQLE
        NGI IP+RKRS    ++P+ +++  S S++EVA  MI MANG    R+RKKP         R +EME G+S  EMPAAMR+ I+  GGYEI+LVI+K+LE
Subjt:  NGIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAMANGGFCKRKRKKPSTVKQRKKSREKEMELGKSPPEMPAAMRDRIMGKGGYEIELVIQKQLE

Query:  ESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKK---KKKKGMEVGIMDSLLQESSIWLKKWKIGSGKVYCLMNN
        ESDV+RNHGRL LP  K++ EF RE+ER++LDEENG KKKK   KKK G+EVGIMD  L+ESS+ LKKWKIGS + YCL+ N
Subjt:  ESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKK---KKKKGMEVGIMDSLLQESSIWLKKWKIGSGKVYCLMNN

SwissProt top hitse value%identityAlignment
Q9XIP5 Putative B3 domain-containing protein At2g274108.2e-0427.94Show/hide
Query:  KRKRKKPSTVKQRKKSREK------EMELGKSPPEMPAAMRDRIMGKGGYEIELVIQKQLEESDVNRNHGRLSLPAKKVRR-EFLREEERKVLDEENGNK
        + K K+P  V++R   + K      E  +  +PPE    +  R   + GY  +L+  +QL ++D+ +   RLS+P K+V+  +FL E+E +++ E     
Subjt:  KRKRKKPSTVKQRKKSREK------EMELGKSPPEMPAAMRDRIMGKGGYEIELVIQKQLEESDVNRNHGRLSLPAKKVRR-EFLREEERKVLDEENGNK

Query:  KKKKKKKGMEVGIMDSLLQESSIWLKKWKIGSGKVY
          K +  G+ V  +D  L +  + L+KWK+    +Y
Subjt:  KKKKKKKGMEVGIMDSLLQESSIWLKKWKIGSGKVY

Arabidopsis top hitse value%identityAlignment
AT2G27410.1 Domain of unknown function (DUF313)5.9e-0527.94Show/hide
Query:  KRKRKKPSTVKQRKKSREK------EMELGKSPPEMPAAMRDRIMGKGGYEIELVIQKQLEESDVNRNHGRLSLPAKKVRR-EFLREEERKVLDEENGNK
        + K K+P  V++R   + K      E  +  +PPE    +  R   + GY  +L+  +QL ++D+ +   RLS+P K+V+  +FL E+E +++ E     
Subjt:  KRKRKKPSTVKQRKKSREK------EMELGKSPPEMPAAMRDRIMGKGGYEIELVIQKQLEESDVNRNHGRLSLPAKKVRR-EFLREEERKVLDEENGNK

Query:  KKKKKKKGMEVGIMDSLLQESSIWLKKWKIGSGKVY
          K +  G+ V  +D  L +  + L+KWK+    +Y
Subjt:  KKKKKKKGMEVGIMDSLLQESSIWLKKWKIGSGKVY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATGGGGATGATTCAACCAGGCCTTCCTTTAGGGTTTAATGGAATCCACATTCCTCGGAGGAAGAGGTCCTGCTTTGTCCAATCGAAGCCTGAAGATGACGATGA
CGGAGCCTCCATTTCCATGATGGAGGTGGCCAATATAATGATCGCCATGGCCAACGGTGGATTCTGCAAAAGGAAGAGGAAGAAACCTTCGACGGTGAAACAGAGGAAGA
AATCGAGGGAAAAGGAAATGGAGTTGGGGAAAAGTCCGCCGGAGATGCCGGCGGCGATGAGAGATCGGATTATGGGGAAGGGCGGGTATGAAATCGAATTGGTGATTCAA
AAGCAACTTGAAGAGAGTGATGTGAACAGAAACCATGGGCGATTGAGTCTTCCGGCGAAGAAGGTGAGAAGGGAATTCTTGAGAGAAGAAGAAAGAAAAGTGTTGGATGA
AGAAAATGGGAATAAGAAGAAGAAGAAGAAGAAGAAGGGAATGGAAGTGGGAATTATGGATTCTCTTCTCCAAGAAAGCTCAATTTGGTTGAAGAAATGGAAGATTGGGA
GTGGTAAGGTTTATTGTTTGATGAACAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAATGGGGATGATTCAACCAGGCCTTCCTTTAGGGTTTAATGGAATCCACATTCCTCGGAGGAAGAGGTCCTGCTTTGTCCAATCGAAGCCTGAAGATGACGATGA
CGGAGCCTCCATTTCCATGATGGAGGTGGCCAATATAATGATCGCCATGGCCAACGGTGGATTCTGCAAAAGGAAGAGGAAGAAACCTTCGACGGTGAAACAGAGGAAGA
AATCGAGGGAAAAGGAAATGGAGTTGGGGAAAAGTCCGCCGGAGATGCCGGCGGCGATGAGAGATCGGATTATGGGGAAGGGCGGGTATGAAATCGAATTGGTGATTCAA
AAGCAACTTGAAGAGAGTGATGTGAACAGAAACCATGGGCGATTGAGTCTTCCGGCGAAGAAGGTGAGAAGGGAATTCTTGAGAGAAGAAGAAAGAAAAGTGTTGGATGA
AGAAAATGGGAATAAGAAGAAGAAGAAGAAGAAGAAGGGAATGGAAGTGGGAATTATGGATTCTCTTCTCCAAGAAAGCTCAATTTGGTTGAAGAAATGGAAGATTGGGA
GTGGTAAGGTTTATTGTTTGATGAACAATTGA
Protein sequenceShow/hide protein sequence
MGMGMIQPGLPLGFNGIHIPRRKRSCFVQSKPEDDDDGASISMMEVANIMIAMANGGFCKRKRKKPSTVKQRKKSREKEMELGKSPPEMPAAMRDRIMGKGGYEIELVIQ
KQLEESDVNRNHGRLSLPAKKVRREFLREEERKVLDEENGNKKKKKKKKGMEVGIMDSLLQESSIWLKKWKIGSGKVYCLMNN