CuGenDBv2

Gene ID	HG10004815
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Transcription initiation factor IIF subunit beta
Genome location	Chr08:20645103..20647744
RNA-Seq Expression	HG10004815
Synteny	HG10004815
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0006413 - translational initiation (biological process) GO:0005674 - transcription factor TFIIF complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003743 - translation initiation factor activity (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152667.1 transcription initiation factor IIF subunit beta [Cucumis sativus]

1.3e-24

91.3

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Query:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL
        MEDE G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSD LPLAKVILSLDPLQSDESSSLQ  +
Subjt:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL

XP_008444765.1 PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis melo]

3.5e-25

91.3

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Query:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL
        MED+ G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQ  +
Subjt:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL

XP_022951326.1 transcription initiation factor IIF subunit beta [Cucurbita moschata]

1.4e-26

92.65

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Query:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL
        MEDE GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSDESSSLQ  +
Subjt:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL

XP_023002475.1 transcription initiation factor IIF subunit beta [Cucurbita maxima]

1.4e-26

92.65

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Query:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL
        MEDE GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSDESSSLQ  +
Subjt:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL

XP_038884084.1 transcription initiation factor IIF subunit beta-like [Benincasa hispida]

6.4e-27

94.12

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Query:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL
        MEDE GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQ  +
Subjt:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRL0 Transcription initiation factor IIF subunit beta

6.5e-25

91.3

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Query:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL
        MEDE G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSD LPLAKVILSLDPLQSDESSSLQ  +
Subjt:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL

A0A1S3BBV5 Transcription initiation factor IIF subunit beta

1.7e-25

91.3

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Query:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL
        MED+ G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQ  +
Subjt:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL

A0A5A7VAJ9 Transcription initiation factor IIF subunit beta

1.7e-25

91.3

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Query:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL
        MED+ G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQ  +
Subjt:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL

A0A6J1GH97 Transcription initiation factor IIF subunit beta

6.9e-27

92.65

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Query:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL
        MEDE GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSDESSSLQ  +
Subjt:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL

A0A6J1KP21 Transcription initiation factor IIF subunit beta

6.9e-27

92.65

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Query:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL
        MEDE GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSDESSSLQ  +
Subjt:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G75510.1 Transcription initiation factor IIF, beta subunit

7.9e-07

35.71

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Query:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPS---------DPLPLAKVILSLDPLQSDESSSLQLSLMPTE
        NLD  K+DRS+WLMKCP++V K+W     S          P  +AK++  +DPL+ D     ++ ++  E
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPS---------DPLPLAKVILSLDPLQSDESSSLQLSLMPTE

AT3G52270.1 Transcription initiation factor IIF, beta subunit

2.5e-05

39.6

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Query:  LDTGKADRSVWLMKCPLLVAKSWQAHP-------PSDPL-PLAKVILSLDPL-QSDESSSLQLSL-------MPTEKDLDKISD---KQKLAEISEGAAS
        L+TG A+RS+ LMK P LVA S Q+H        P DP  P AKVIL +DPL   DE +   + L       MP    LD   D        E S+G  S
Subjt:  LDTGKADRSVWLMKCPLLVAKSWQAHP-------PSDPL-PLAKVILSLDPL-QSDESSSLQLSL-------MPTEKDLDKISD---KQKLAEISEGAAS

Query:  I
        +
Subjt:  I

Sequences

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CDS sequence

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ATGGAAGATGAGCAGGGCGGCGGTAGTAGTAGTAACTTGGATACAGGAAAGGCGGATAGATCAGTGTGGCTGATGAAGTGCCCTTTGTTAGTCGCTAAGTCATGGCAGGC
TCATCCTCCATCTGATCCTCTTCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAGTCCTCTTCTCTCCAGTTGTCGTTGATGCCAACTGAGAAGG
ATTTGGATAAAATAAGTGACAAACAGAAGCTTGCTGAAATAAGTGAAGGAGCTGCCTCCATTTTCAACTACCTCTCTGTTCAAGCTGAAAGTAATATTGTCATGGCATAA

mRNA sequence

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Protein sequence

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MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSLMPTEKDLDKISDKQKLAEISEGAASIFNYLSVQAESNIVMA

HG10004815 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome