; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10004829 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10004829
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTLC domain-containing protein
Genome locationChr08:20766546..20768933
RNA-Seq ExpressionHG10004829
SyntenyHG10004829
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR006634 - TRAM/LAG1/CLN8 homology domain
IPR042512 - TLC domain-containing protein 5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598466.1 TLC domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sororia]7.2e-7970.82Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ---------------------
        M VS  RD DV N+VVLGVI+WTL FI  RKLLPNRSFEFCNRL+STLHACLAVTLASISVQNWRCPICPLAS++SPFQ                     
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ---------------------

Query:  --------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSAT-VPFLIKA
                                   GSEMVAALWITEISSPFLHLREILKEIGY+GTDLNLAADIGFAVIFSF RMVGGPYLTYMTLSAT VP LIKA
Subjt:  --------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSAT-VPFLIKA

Query:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        MALGLQLVSAYWFYKIVRM+RFKLNNRST KN+
Subjt:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

KAG7029404.1 Transmembrane protein, partial [Cucurbita argyrosperma subsp. argyrosperma]5.5e-7971.24Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ---------------------
        M VS  RD DV N+VVLGVI+WTL FI  RKLLPNRSFEFCNRL+STLHACLAVTLASISVQNWRCPICPLAS++SPFQ                     
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ---------------------

Query:  --------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSAT-VPFLIKA
                                   GSEMVAALWITEISSPFLHLREILKEIGY+GTDLNLAADIGFAVIFSF RMVGGPYLTYMTLSAT VP LIKA
Subjt:  --------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSAT-VPFLIKA

Query:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        MALGLQLVSAYWFYKIVRMVRFKLNNRST KN+
Subjt:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

XP_004152683.2 TLC domain-containing protein 5 isoform X1 [Cucumis sativus]2.1e-7871.24Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRK-LLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ--------------------
        MEVS+SRD DV N++V GVISWTLGFI LRK + PNRSFEFCNRLIST+HA LAVTLASISVQNWRCPICPLASKSS FQ                    
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRK-LLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ--------------------

Query:  ---------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSATVPFLIKA
                                    GSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTY+TL A VPFLIKA
Subjt:  ---------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSATVPFLIKA

Query:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        MALGLQLVSAYWFYKIVRM+RFKLNNRSTLK +
Subjt:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

XP_008444752.1 PREDICTED: transmembrane protein 136 [Cucumis melo]1.2e-7870.39Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLL-PNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ--------------------
        MEVS++RD D+ N+VV GVISWTLGF+ LRK++ PNRSFEFCNRLIST+HA LAVTLASISVQNWRCPICPLASKSS FQ                    
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLL-PNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ--------------------

Query:  ---------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSATVPFLIKA
                                    GSEMVAALWITEISSPFLHLREILKE GY+GTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSA VPFLIKA
Subjt:  ---------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSATVPFLIKA

Query:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        MALGLQLVSAYWFYKIVRM+RFKL NRSTLKN+
Subjt:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

XP_038886579.1 TLC domain-containing protein 5-like [Benincasa hispida]7.0e-8273.71Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ---------------------
        M VSDSRD  V NIVV GVISWTLGFI LRKLLPNRSFEFCNRLIST+HACLAVTLASISV+NWRCPICPLAS+SSPFQ                     
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ---------------------

Query:  --------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSATVPFLIKAM
                                   GSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFS ARMVGGPYLTYMTL+ATVPFLIKAM
Subjt:  --------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSATVPFLIKAM

Query:  ALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        ALGLQLVSAYWFYKIVRMVRFKLNNR TLKN+
Subjt:  ALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

TrEMBL top hitse value%identityAlignment
A0A0A0LLI2 TLC domain-containing protein1.0e-7871.24Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRK-LLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ--------------------
        MEVS+SRD DV N++V GVISWTLGFI LRK + PNRSFEFCNRLIST+HA LAVTLASISVQNWRCPICPLASKSS FQ                    
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRK-LLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ--------------------

Query:  ---------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSATVPFLIKA
                                    GSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTY+TL A VPFLIKA
Subjt:  ---------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSATVPFLIKA

Query:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        MALGLQLVSAYWFYKIVRM+RFKLNNRSTLK +
Subjt:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

A0A1S3BB19 transmembrane protein 1365.9e-7970.39Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLL-PNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ--------------------
        MEVS++RD D+ N+VV GVISWTLGF+ LRK++ PNRSFEFCNRLIST+HA LAVTLASISVQNWRCPICPLASKSS FQ                    
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLL-PNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ--------------------

Query:  ---------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSATVPFLIKA
                                    GSEMVAALWITEISSPFLHLREILKE GY+GTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSA VPFLIKA
Subjt:  ---------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSATVPFLIKA

Query:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        MALGLQLVSAYWFYKIVRM+RFKL NRSTLKN+
Subjt:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

A0A5A7VDR0 Transmembrane protein 1365.9e-7970.39Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLL-PNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ--------------------
        MEVS++RD D+ N+VV GVISWTLGF+ LRK++ PNRSFEFCNRLIST+HA LAVTLASISVQNWRCPICPLASKSS FQ                    
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLL-PNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ--------------------

Query:  ---------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSATVPFLIKA
                                    GSEMVAALWITEISSPFLHLREILKE GY+GTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSA VPFLIKA
Subjt:  ---------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSATVPFLIKA

Query:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        MALGLQLVSAYWFYKIVRM+RFKL NRSTLKN+
Subjt:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

A0A6J1HDN8 transmembrane protein 56-B-like1.1e-7770.39Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ---------------------
        M VS  RD DV N+VVLGVI+WTL FI  RKLLPNRSFEFCNRL+STLHACLAVTLASISV+NWRCPICPLAS++SPFQ                     
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ---------------------

Query:  --------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSAT-VPFLIKA
                                   GSEMVAALWITEISSPFLHLREILKEIG +GTDLNLAADIGFAVIFSF RMVGGPYLTYMTLSAT VP LIKA
Subjt:  --------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSAT-VPFLIKA

Query:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        MALGLQLVSAYWFYKIVRMVRFKLNNRST KN+
Subjt:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

A0A6J1K2K3 transmembrane protein 136-like6.2e-7669.1Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ---------------------
        M VS  RD DV N+VVLGVI+WTL FI LRKLLP RSF FCNRL+STLHACLAVTLASISVQNWRCPICPLAS++SPFQ                     
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ---------------------

Query:  --------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSAT-VPFLIKA
                                   GSEMVAALWITEISSPFLHLREILKEIGY+GTD NLAAD GFAVIFS  RMVGGPYLTYMTLSAT VP LIKA
Subjt:  --------------------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSAT-VPFLIKA

Query:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        MALGLQLVSAYWFYKIVRMVRFKLN+RST KN+
Subjt:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G35170.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein1.4e-4849.77Show/hide
Query:  NIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ---------------------------------
        +I  + +ISW L FI +R++  + SF+F  R++STLHA +AVTLA++S+Q+W CP+CP+AS SS  Q                                 
Subjt:  NIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ---------------------------------

Query:  --------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSATVPFLIKAMALGLQLVSAYWF
                       GSEMVAA+WITEISSPFLHLREILKEIG + TDLNLAAD+ FA IFS ARMVGGPYL Y+T+ A  P LIK M LGLQLVSA  F
Subjt:  --------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSATVPFLIKAMALGLQLVSAYWF

Query:  YKIVRMVRFKLNNRS
        YK+++M+R+K   RS
Subjt:  YKIVRMVRFKLNNRS

AT1G35180.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein5.4e-5653.92Show/hide
Query:  VKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ-------------------------------
        V +I  +GVISW L FI +R++  + SF+F  R++STLHA +AVTLA++S+Q+W CP+CP+AS SS  Q                               
Subjt:  VKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ-------------------------------

Query:  ----------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSATVPFLIKAMALGLQLVSAY
                         GSEMVAALWITEISSPFLHLREILKEIGY+ TDLNLAAD+ FA IFS ARMVGGPYL Y+T+SA  P LIKAMALGLQLVSA+
Subjt:  ----------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSATVPFLIKAMALGLQLVSAY

Query:  WFYKIVRMVRFKLNNRS
        WFYKI++M+R+K   RS
Subjt:  WFYKIVRMVRFKLNNRS

AT1G45010.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein1.6e-4750Show/hide
Query:  IVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ----------------------------------
        I+V GVISW + FI  R++  + SF F NRL+ST HA +AVTLA++SVQ+  CP+CPLASK S  Q                                  
Subjt:  IVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQ----------------------------------

Query:  -------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSATVPFLIKAMALGLQLVSAYWFY
                     SGSE+VA LW+ EISSPF HLREILKEIGYK T LNLAAD+ FA IF+ AR+V GP+L Y++LSA  P  IKAM  GLQLVS +WFY
Subjt:  -------------SGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSATVPFLIKAMALGLQLVSAYWFY

Query:  KIVRMVRFKL
        KI  M+R+KL
Subjt:  KIVRMVRFKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTTTCAGACAGTCGAGATCGGGACGTAAAAAACATCGTCGTTTTGGGGGTAATATCATGGACATTGGGTTTCATTTGCTTAAGAAAACTCCTTCCAAATCGATC
TTTTGAGTTTTGCAATCGACTCATTTCCACACTCCATGCTTGTTTGGCTGTTACATTGGCTTCCATCTCTGTTCAAAATTGGCGTTGTCCCATTTGTCCTCTTGCTTCGA
AATCCTCACCCTTTCAGAGTGGGTCAGAGATGGTAGCAGCATTGTGGATAACGGAGATCTCAAGCCCCTTTCTCCATTTAAGGGAAATTCTTAAAGAAATTGGTTACAAA
GGCACTGACCTTAATTTGGCTGCTGATATTGGATTTGCAGTGATATTCTCATTTGCAAGAATGGTTGGAGGGCCTTATCTCACCTACATGACTCTATCTGCCACTGTCCC
TTTTCTTATTAAGGCCATGGCTCTGGGATTGCAGCTTGTCAGTGCCTACTGGTTTTACAAGATCGTGAGAATGGTCAGATTCAAACTCAACAACAGATCTACATTGAAGA
ACAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTTTCAGACAGTCGAGATCGGGACGTAAAAAACATCGTCGTTTTGGGGGTAATATCATGGACATTGGGTTTCATTTGCTTAAGAAAACTCCTTCCAAATCGATC
TTTTGAGTTTTGCAATCGACTCATTTCCACACTCCATGCTTGTTTGGCTGTTACATTGGCTTCCATCTCTGTTCAAAATTGGCGTTGTCCCATTTGTCCTCTTGCTTCGA
AATCCTCACCCTTTCAGAGTGGGTCAGAGATGGTAGCAGCATTGTGGATAACGGAGATCTCAAGCCCCTTTCTCCATTTAAGGGAAATTCTTAAAGAAATTGGTTACAAA
GGCACTGACCTTAATTTGGCTGCTGATATTGGATTTGCAGTGATATTCTCATTTGCAAGAATGGTTGGAGGGCCTTATCTCACCTACATGACTCTATCTGCCACTGTCCC
TTTTCTTATTAAGGCCATGGCTCTGGGATTGCAGCTTGTCAGTGCCTACTGGTTTTACAAGATCGTGAGAATGGTCAGATTCAAACTCAACAACAGATCTACATTGAAGA
ACAATTAA
Protein sequenceShow/hide protein sequence
MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQSGSEMVAALWITEISSPFLHLREILKEIGYK
GTDLNLAADIGFAVIFSFARMVGGPYLTYMTLSATVPFLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN