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HG10004850 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10004850
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA polymerase epsilon catalytic subunit A, putative
Genome locationChr08:20916951..20917612
RNA-Seq ExpressionHG10004850
SyntenyHG10004850
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585589.1 hypothetical protein SDJN03_18322, partial [Cucurbita argyrosperma subsp. sororia]9.2e-5584.44Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAKNVAAEAEFAENDLERENLEKLKKI
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYW+SKRKLEEEHLRAISMP    VDR+TVGIDYKRSSSFP A   A +  FAE+DLER+NLEKLKK 
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAKNVAAEAEFAENDLERENLEKLKKI

Query:  GWWTRSNSAFLNEPPVLDGATKAYASLYGVADVAS
        GWW RSNSAFLNEPPVLDGA KAYAS YGV DVAS
Subjt:  GWWTRSNSAFLNEPPVLDGATKAYASLYGVADVAS

XP_004152691.1 uncharacterized protein LOC101215562 [Cucumis sativus]8.0e-5984.06Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAK-NVAAEAEFAENDLERENLEKLKK
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYW+SKRKLE+EHLRA+S+PVD   D ETVG+DYKRSSSFPPAK +VA EA+F EN ++R+NLE+LKK
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAK-NVAAEAEFAENDLERENLEKLKK

Query:  IGWWTRSNSAFLNEPPVLDGATKAYASLYGVADVASCK
        IGWWTRSNSAFLNEPPVLDGA+KA  SLYGVADVASCK
Subjt:  IGWWTRSNSAFLNEPPVLDGATKAYASLYGVADVASCK

XP_008444729.1 PREDICTED: uncharacterized protein LOC103487979 [Cucumis melo]7.2e-6084.67Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAKNVAAEAEFAENDLERENLEKLKKI
        MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYW+SKRKLEEEHLRAIS+PVDRY DRE VGIDYKRSSSFPPA++VA E++F EN L+R+NLE+L+K+
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAKNVAAEAEFAENDLERENLEKLKKI

Query:  GWWTRSNSAFLNEPPVLDGATKAYASLYGVADVASCK
        GWWTRSNSAFLNEPPVLDGA+KA  SLYGVADVASCK
Subjt:  GWWTRSNSAFLNEPPVLDGATKAYASLYGVADVASCK

XP_023002545.1 uncharacterized protein LOC111496358 [Cucurbita maxima]5.4e-5584.44Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAKNVAAEAEFAENDLERENLEKLKKI
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYW+SKRKLEEEHLRAISMP    VDR+TVGIDYKRSSSFP A   A +  FAE+DLER+NLEKLKK 
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAKNVAAEAEFAENDLERENLEKLKKI

Query:  GWWTRSNSAFLNEPPVLDGATKAYASLYGVADVAS
        GWW RSNSAFLNEPPVLDGA KAYAS YGV DVAS
Subjt:  GWWTRSNSAFLNEPPVLDGATKAYASLYGVADVAS

XP_038886573.1 uncharacterized protein LOC120076743 [Benincasa hispida]2.1e-6793.43Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAKNVAAEAEFAENDLERENLEKLKKI
        MGSLM GWNSPVLDPKSVKFKRNRSLTK+EIEAYW+SK+K EEEHLRAISMPVDRY+DRETVGIDYKRSSSFPPAK+V+AEAEFAENDLERENLEKLKKI
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAKNVAAEAEFAENDLERENLEKLKKI

Query:  GWWTRSNSAFLNEPPVLDGATKAYASLYGVADVASCK
        GWWTRSNSAFLNEPPVLDGATK YASLYGVADVASCK
Subjt:  GWWTRSNSAFLNEPPVLDGATKAYASLYGVADVASCK

TrEMBL top hitse value%identityAlignment
A0A0A0LRI3 Uncharacterized protein3.9e-5984.06Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAK-NVAAEAEFAENDLERENLEKLKK
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYW+SKRKLE+EHLRA+S+PVD   D ETVG+DYKRSSSFPPAK +VA EA+F EN ++R+NLE+LKK
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAK-NVAAEAEFAENDLERENLEKLKK

Query:  IGWWTRSNSAFLNEPPVLDGATKAYASLYGVADVASCK
        IGWWTRSNSAFLNEPPVLDGA+KA  SLYGVADVASCK
Subjt:  IGWWTRSNSAFLNEPPVLDGATKAYASLYGVADVASCK

A0A1S3BBS7 uncharacterized protein LOC1034879793.5e-6084.67Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAKNVAAEAEFAENDLERENLEKLKKI
        MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYW+SKRKLEEEHLRAIS+PVDRY DRE VGIDYKRSSSFPPA++VA E++F EN L+R+NLE+L+K+
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAKNVAAEAEFAENDLERENLEKLKKI

Query:  GWWTRSNSAFLNEPPVLDGATKAYASLYGVADVASCK
        GWWTRSNSAFLNEPPVLDGA+KA  SLYGVADVASCK
Subjt:  GWWTRSNSAFLNEPPVLDGATKAYASLYGVADVASCK

A0A5A7VD66 Putative DNA polymerase epsilon catalytic subunit A3.5e-6084.67Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAKNVAAEAEFAENDLERENLEKLKKI
        MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYW+SKRKLEEEHLRAIS+PVDRY DRE VGIDYKRSSSFPPA++VA E++F EN L+R+NLE+L+K+
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAKNVAAEAEFAENDLERENLEKLKKI

Query:  GWWTRSNSAFLNEPPVLDGATKAYASLYGVADVASCK
        GWWTRSNSAFLNEPPVLDGA+KA  SLYGVADVASCK
Subjt:  GWWTRSNSAFLNEPPVLDGATKAYASLYGVADVASCK

A0A6J1GI71 uncharacterized protein LOC1114544242.9e-5483.7Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAKNVAAEAEFAENDLERENLEKLKKI
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYW+SKRKLEEEHLRAISMP    VD +TVGIDYKRSSSFP A   A +  FAE+DLER+NLEKLKK 
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAKNVAAEAEFAENDLERENLEKLKKI

Query:  GWWTRSNSAFLNEPPVLDGATKAYASLYGVADVAS
        GWW RSNSAFLNEPPVLDGA KAYAS YGV DVAS
Subjt:  GWWTRSNSAFLNEPPVLDGATKAYASLYGVADVAS

A0A6J1KP90 uncharacterized protein LOC1114963582.6e-5584.44Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAKNVAAEAEFAENDLERENLEKLKKI
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYW+SKRKLEEEHLRAISMP    VDR+TVGIDYKRSSSFP A   A +  FAE+DLER+NLEKLKK 
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAKNVAAEAEFAENDLERENLEKLKKI

Query:  GWWTRSNSAFLNEPPVLDGATKAYASLYGVADVAS
        GWW RSNSAFLNEPPVLDGA KAYAS YGV DVAS
Subjt:  GWWTRSNSAFLNEPPVLDGATKAYASLYGVADVAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G19530.1 unknown protein5.8e-1537.78Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRK-LEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAKNVAAEAEFAENDLERENLEKLKK
        MGSLM GW+S V DPKSV  +R +SLT+EEI+ +W++K+K  EEEH++A S  V +                   A++ A E +  ++  E ++    K 
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRK-LEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAKNVAAEAEFAENDLERENLEKLKK

Query:  IGWWTRSNSAFLNEPPVLDGATKAYASLYGVADVA
         GWW ++  AFLNEP   +G    Y S + VA +A
Subjt:  IGWWTRSNSAFLNEPPVLDGATKAYASLYGVADVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATCTCTAATGGGCGGATGGAACTCTCCTGTTCTCGATCCTAAATCAGTCAAGTTCAAGAGAAATCGGTCGCTTACGAAAGAGGAAATCGAAGCTTACTGGAGATC
AAAGAGGAAATTGGAGGAAGAACATCTCAGAGCGATTTCTATGCCGGTGGATCGTTATGTTGATCGCGAAACAGTCGGAATAGACTACAAAAGATCGAGTTCGTTTCCGC
CGGCGAAGAACGTTGCGGCGGAAGCAGAATTTGCAGAGAACGATTTGGAGAGGGAAAACCTAGAGAAATTGAAGAAAATTGGCTGGTGGACGAGGAGTAATTCGGCGTTT
CTGAATGAACCGCCAGTCCTCGACGGCGCTACAAAAGCTTACGCGTCGTTGTACGGCGTCGCCGACGTGGCCTCGTGTAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGATCTCTAATGGGCGGATGGAACTCTCCTGTTCTCGATCCTAAATCAGTCAAGTTCAAGAGAAATCGGTCGCTTACGAAAGAGGAAATCGAAGCTTACTGGAGATC
AAAGAGGAAATTGGAGGAAGAACATCTCAGAGCGATTTCTATGCCGGTGGATCGTTATGTTGATCGCGAAACAGTCGGAATAGACTACAAAAGATCGAGTTCGTTTCCGC
CGGCGAAGAACGTTGCGGCGGAAGCAGAATTTGCAGAGAACGATTTGGAGAGGGAAAACCTAGAGAAATTGAAGAAAATTGGCTGGTGGACGAGGAGTAATTCGGCGTTT
CTGAATGAACCGCCAGTCCTCGACGGCGCTACAAAAGCTTACGCGTCGTTGTACGGCGTCGCCGACGTGGCCTCGTGTAAGTAG
Protein sequenceShow/hide protein sequence
MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRETVGIDYKRSSSFPPAKNVAAEAEFAENDLERENLEKLKKIGWWTRSNSAF
LNEPPVLDGATKAYASLYGVADVASCK