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HG10004853 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10004853
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein RADIALIS-like 4
Genome locationChr08:20942493..20942774
RNA-Seq ExpressionHG10004853
SyntenyHG10004853
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065228.1 protein RADIALIS-like 4 [Cucumis melo var. makuwa]6.7e-4190.32Show/hide
Query:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR
        MASSSFKSSG+ SSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTA+EVKRHYDILLQDLMHIESGK+PLPNYKP+V N S+Y DEQR
Subjt:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR

XP_004152694.1 protein RADIALIS-like 4 [Cucumis sativus]5.6e-4089.25Show/hide
Query:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR
        MASSSFKSSG+ SSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT +EVKRHYDILLQDLMHIESGK+PLPNYKPI  N S+Y DEQR
Subjt:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR

XP_008444724.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]6.7e-4190.32Show/hide
Query:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR
        MASSSFKSSG+ SSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTA+EVKRHYDILLQDLMHIESGK+PLPNYKP+V N S+Y DEQR
Subjt:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR

XP_022961874.1 protein RADIALIS-like 4 [Cucurbita moschata]2.1e-3988.17Show/hide
Query:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR
        MA+S FKSSGS SSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTA+EVKRHYDIL+QDLMHIESGKIPLPNYKPIVSN ++YGDEQR
Subjt:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR

XP_038884277.1 protein RADIALIS-like 4 [Benincasa hispida]6.0e-4293.55Show/hide
Query:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR
        MASSSFKSSGS SSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTA+EVKRHYDILLQDLMHIESGK+PLPNYKPIVSN S+Y DEQR
Subjt:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR

TrEMBL top hitse value%identityAlignment
A0A0A0LPB1 SANT domain-containing protein2.7e-4089.25Show/hide
Query:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR
        MASSSFKSSG+ SSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT +EVKRHYDILLQDLMHIESGK+PLPNYKPI  N S+Y DEQR
Subjt:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR

A0A1S3BBS2 protein RADIALIS-like 43.2e-4190.32Show/hide
Query:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR
        MASSSFKSSG+ SSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTA+EVKRHYDILLQDLMHIESGK+PLPNYKP+V N S+Y DEQR
Subjt:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR

A0A5A7VC75 Protein RADIALIS-like 43.2e-4190.32Show/hide
Query:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR
        MASSSFKSSG+ SSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTA+EVKRHYDILLQDLMHIESGK+PLPNYKP+V N S+Y DEQR
Subjt:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR

A0A6J1HFA3 protein RADIALIS-like 41.0e-3988.17Show/hide
Query:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR
        MA+S FKSSGS SSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTA+EVKRHYDIL+QDLMHIESGKIPLPNYKPIVSN ++YGDEQR
Subjt:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR

A0A6J1K2Q1 protein RADIALIS-like 41.0e-3988.17Show/hide
Query:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR
        MA+S FKSSGS SSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTA+EVKRHYDIL+QDLMHIESGKIPLPNYKPIVSN ++YGDEQR
Subjt:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 15.5e-2254.74Show/hide
Query:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPI--VSNASLYGDEQR
        MASSS  S    S SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT +EVKRHY++L+QD+  IE+G +P PNY+     +N  L  +E+R
Subjt:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPI--VSNASLYGDEQR

Q1A173 Protein RADIALIS-like 67.7e-2460.24Show/hide
Query:  SSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGD
        +S S  S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT +EVKRHYDIL++DL++IE+G++PLPNYK   SN+    D
Subjt:  SSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGD

Q58FS3 Transcription factor RADIALIS3.0e-2053.85Show/hide
Query:  WTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR
        W+ K+NK FE AL +Y +DTPDRW  VARAV G+T +EVK+HY+IL++D+ +IESGK+P PNY+   +  ++  DE+R
Subjt:  WTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR

Q8GW75 Protein RADIALIS-like 58.5e-2365.43Show/hide
Query:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPI
        MASSS  S    SSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+A+EVKRHYDIL++DLM+IE   +PLP YK +
Subjt:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPI

Q9SIJ5 Protein RADIALIS-like 21.6e-2156.98Show/hide
Query:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNAS
        MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT +E KR YD+L++D+  IE+G +P P+YK    N++
Subjt:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNAS

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 56.0e-2465.43Show/hide
Query:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPI
        MASSS  S    SSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+A+EVKRHYDIL++DLM+IE   +PLP YK +
Subjt:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPI

AT1G75250.1 RAD-like 65.5e-2560.24Show/hide
Query:  SSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGD
        +S S  S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT +EVKRHYDIL++DL++IE+G++PLPNYK   SN+    D
Subjt:  SSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGD

AT1G75250.2 RAD-like 65.5e-2560.24Show/hide
Query:  SSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGD
        +S S  S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT +EVKRHYDIL++DL++IE+G++PLPNYK   SN+    D
Subjt:  SSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGD

AT2G21650.1 Homeodomain-like superfamily protein1.1e-2256.98Show/hide
Query:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNAS
        MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT +E KR YD+L++D+  IE+G +P P+YK    N++
Subjt:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNAS

AT4G39250.1 RAD-like 13.9e-2354.74Show/hide
Query:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPI--VSNASLYGDEQR
        MASSS  S    S SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT +EVKRHY++L+QD+  IE+G +P PNY+     +N  L  +E+R
Subjt:  MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPI--VSNASLYGDEQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAAGCTCTTTTAAATCTTCAGGCAGTTGTAGCTCCTCATGGACGCTTAAGCAAAACAAAAAATTTGAGGATGCCCTGGTTTTATATCCCGAAGACACACCAGA
TCGGTGGCAAAAAGTGGCCAGAGCAGTGGGTGGAAAAACAGCTGATGAAGTAAAAAGGCATTATGATATCTTGTTGCAAGATCTCATGCATATAGAATCGGGAAAAATTC
CTCTTCCCAACTATAAGCCCATTGTTTCCAACGCTTCACTGTATGGTGATGAACAGAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCAAGCTCTTTTAAATCTTCAGGCAGTTGTAGCTCCTCATGGACGCTTAAGCAAAACAAAAAATTTGAGGATGCCCTGGTTTTATATCCCGAAGACACACCAGA
TCGGTGGCAAAAAGTGGCCAGAGCAGTGGGTGGAAAAACAGCTGATGAAGTAAAAAGGCATTATGATATCTTGTTGCAAGATCTCATGCATATAGAATCGGGAAAAATTC
CTCTTCCCAACTATAAGCCCATTGTTTCCAACGCTTCACTGTATGGTGATGAACAGAGGTAA
Protein sequenceShow/hide protein sequence
MASSSFKSSGSCSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTADEVKRHYDILLQDLMHIESGKIPLPNYKPIVSNASLYGDEQR