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HG10004862 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10004862
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSANT domain-containing protein
Genome locationChr08:21006430..21006786
RNA-Seq ExpressionHG10004862
SyntenyHG10004862
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065236.1 protein RADIALIS-like 4 [Cucumis melo var. makuwa]6.9e-3588.24Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQRQSLFFSLNFLLLLF
        MFENALTVYDKDSPDRWQKLARA+GGKTA+EVKRHYEMLVEDVHNIETG++PLPNYSKHYSYNNFLDEEQRQSL  SL+  L LF
Subjt:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQRQSLFFSLNFLLLLF

KAG7029384.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-3387.36Show/hide
Query:  SSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYS---KHYSYNNFLDEEQRQ
        +SSSSWSSKQNK+FENALTVYDKDSPDRWQKLA ++GGKTAEEVKRHYEMLVEDVHNIETGR+PLPNYS   KHYS N FLDEEQRQ
Subjt:  SSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYS---KHYSYNNFLDEEQRQ

XP_008444713.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]2.3e-3892.31Show/hide
Query:  TSSSSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQR
        +S++SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARA+GGKTA+EVKRHYEMLVEDVHNIETG++PLPNYSKHYSYNNFLDEEQR
Subjt:  TSSSSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQR

XP_031737271.1 protein RADIALIS-like 4 [Cucumis sativus]1.3e-3690.22Show/hide
Query:  TSSSSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSY-NNFLDEEQR
        +S++SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARA+GGKTA+EVKRHYEMLVEDVHNIETG++PLPNYSKHYSY NNF+DEEQR
Subjt:  TSSSSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSY-NNFLDEEQR

XP_038886301.1 protein RADIALIS-like 3 [Benincasa hispida]3.0e-3893.48Show/hide
Query:  MTSSSSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQR
        M SS+SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLA AIGGKTAEEVK HY+MLVEDVHNIETGR+PLPNYSKHYSYNNFLDEEQR
Subjt:  MTSSSSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQR

TrEMBL top hitse value%identityAlignment
A0A0A0LNL9 SANT domain-containing protein6.5e-3990.62Show/hide
Query:  TSSSSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSY-NNFLDEEQRQSLF
        +S++SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARA+GGKTA+EVKRHYEMLVEDVHNIETG++PLPNYSKHYSY NNF+DEEQRQSLF
Subjt:  TSSSSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSY-NNFLDEEQRQSLF

A0A1S3BBR2 protein RADIALIS-like 41.1e-3892.31Show/hide
Query:  TSSSSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQR
        +S++SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARA+GGKTA+EVKRHYEMLVEDVHNIETG++PLPNYSKHYSYNNFLDEEQR
Subjt:  TSSSSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQR

A0A5A7VFX7 Protein RADIALIS-like 43.4e-3588.24Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQRQSLFFSLNFLLLLF
        MFENALTVYDKDSPDRWQKLARA+GGKTA+EVKRHYEMLVEDVHNIETG++PLPNYSKHYSYNNFLDEEQRQSL  SL+  L LF
Subjt:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQRQSLFFSLNFLLLLF

A0A6J1K580 protein RADIALIS-like 45.4e-3385.87Show/hide
Query:  SSSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY---SKHYSYNNFLDEEQR
        +SSSSSSSSS WSSKQNK+FENALTVYDKDSPDRWQKLA ++GGKTAEEVKRHYEMLVEDVHNIETGR+PLPNY   SKH S N FLDEEQR
Subjt:  SSSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY---SKHYSYNNFLDEEQR

A0A6J1KQS6 protein RADIALIS-like 44.5e-3287.1Show/hide
Query:  SSSSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY---SKHYSYNNFLDEEQR
        SSSSSSSSSS+ WSSKQNK+FENALTVYDKDSPDRWQKLA A+GGKTAEEVKRHYEMLVEDVHNIE GRIPLPNY   SK Y Y+NFLDEEQR
Subjt:  SSSSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY---SKHYSYNNFLDEEQR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.0e-2062.67Show/hide
Query:  SSSSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY
        +SSS SS SS SW++KQNK FE AL  YD+D+P+RWQ +A+ +GGKT EEVKRHYE+LV+D+++IE G +P PNY
Subjt:  SSSSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY

Q1A173 Protein RADIALIS-like 64.1e-2261.18Show/hide
Query:  SSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDE
        +S+S SS S W+  QNKMFE AL VYDKD+PDRW  +A+A+GGKT EEVKRHY++LVED+ NIETGR+PLPNY    S +  +++
Subjt:  SSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDE

Q1G3C4 Protein RADIALIS-like 41.5e-1962.5Show/hide
Query:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY
        +SSS S+SSW+++++K FE AL  +DKD+PDRWQK+ARA+GGK+ EEVKRHYE+L+ DV++IE+GR P P Y
Subjt:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY

Q6NNN0 Protein RADIALIS-like 31.7e-2063.01Show/hide
Query:  SSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY
        +S+S SSS+SW+ K+NK+FE AL  YD+D+PDRW  +ARA+GGK+AEEV+RHYE+L+ DV++IE+GR P PNY
Subjt:  SSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY

Q8GW75 Protein RADIALIS-like 54.1e-2271.23Show/hide
Query:  SSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY
        +SSS SSSSSW+SKQNKMFE AL VYDKD+PDRWQ +A+A+G K+AEEVKRHY++LVED+ NIE   +PLP Y
Subjt:  SSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.9e-2371.23Show/hide
Query:  SSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY
        +SSS SSSSSW+SKQNKMFE AL VYDKD+PDRWQ +A+A+G K+AEEVKRHY++LVED+ NIE   +PLP Y
Subjt:  SSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY

AT1G75250.1 RAD-like 66.5e-2349.57Show/hide
Query:  SSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQRQSLFFSLNFLLL
        +S+S SS S W+  QNKMFE AL VYDKD+PDRW  +A+A+GGKT EEVKRHY++LVED+ NIETGR+PLPNY    S +  +++   + +   L  +L 
Subjt:  SSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQRQSLFFSLNFLLL

Query:  LF------DSRFFSSKI
        ++      D   FS K+
Subjt:  LF------DSRFFSSKI

AT1G75250.2 RAD-like 62.9e-2361.18Show/hide
Query:  SSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDE
        +S+S SS S W+  QNKMFE AL VYDKD+PDRW  +A+A+GGKT EEVKRHY++LVED+ NIETGR+PLPNY    S +  +++
Subjt:  SSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDE

AT2G18328.1 RAD-like 41.0e-2062.5Show/hide
Query:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY
        +SSS S+SSW+++++K FE AL  +DKD+PDRWQK+ARA+GGK+ EEVKRHYE+L+ DV++IE+GR P P Y
Subjt:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY

AT4G39250.1 RAD-like 17.2e-2262.67Show/hide
Query:  SSSSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY
        +SSS SS SS SW++KQNK FE AL  YD+D+P+RWQ +A+ +GGKT EEVKRHYE+LV+D+++IE G +P PNY
Subjt:  SSSSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATCATCATCTTCTTCTTCATCATCTTCATCTTCAAGCTGGAGTTCAAAGCAAAACAAGATGTTTGAAAATGCTCTGACAGTTTACGACAAGGACTCGCCAGACCG
GTGGCAGAAGCTGGCGAGAGCGATCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCACAATATTGAGACTGGCAGAATTCCTT
TGCCCAATTACTCTAAACATTATTCCTACAACAACTTTCTTGATGAAGAACAAAGGCAATCTCTTTTCTTCTCTTTAAACTTTTTATTATTGTTATTTGATTCTCGATTT
TTTTCGTCTAAAATTGGATGGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGACATCATCATCTTCTTCTTCATCATCTTCATCTTCAAGCTGGAGTTCAAAGCAAAACAAGATGTTTGAAAATGCTCTGACAGTTTACGACAAGGACTCGCCAGACCG
GTGGCAGAAGCTGGCGAGAGCGATCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCACAATATTGAGACTGGCAGAATTCCTT
TGCCCAATTACTCTAAACATTATTCCTACAACAACTTTCTTGATGAAGAACAAAGGCAATCTCTTTTCTTCTCTTTAAACTTTTTATTATTGTTATTTGATTCTCGATTT
TTTTCGTCTAAAATTGGATGGAGATGA
Protein sequenceShow/hide protein sequence
MTSSSSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQRQSLFFSLNFLLLLFDSRF
FSSKIGWR